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JAL-674 hang on to sequences created by secondary parsiing process to manage transfer...
2014-10-30 Jim ProcterJAL-674 hang on to sequences created by secondary parsiing...
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2014-10-30 Jim ProcterJAL-674 count number of annotation transferred in test
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2014-10-30 Jim ProcterJAL-674 propagate annotation onto mapped sequence and...
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2014-10-30 Jim ProcterJAL-674 register PDB IDs when ever they are resolved...
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2014-10-30 Jim ProcterJAL-674 use PDB ID<>File registry to look up correct...
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2014-10-30 Jim ProcterJAL-674 return original and replacement sequences and...
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2014-10-30 Jim ProcterJAL-674 helpful javadoc for remap method
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2014-10-30 Jim ProcterJAL-674 flag and proxy method to distinguish setMapping...
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2014-10-30 Jim ProcterJAL-674 map on StructureSelectionManager to record...
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2014-10-30 Jim Procterpatch for JAL-795 - use base secondary structure colour...
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2014-10-30 Jim ProcterJAL-674 patch test to verify presence of annotation...
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2014-10-30 Jim ProcterJAL-1551 format and tidy
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2014-10-29 Jim ProcterJAL-1264 JAL-674 test to exercise the AlignmentAnnotation...
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2014-10-29 Jim ProcterJAL-1264 JAL-674 method to copy annotation on structure...
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2014-10-29 Jim ProcterJAL-674 JAL-1264 remap method to allow annotation positions...
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2014-10-27 Jim ProcterMerge branch 'Release_2_8_2_Branch' into merge_r282_dev
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2014-10-23 Jim ProcterMerge branch 'hotfix/JAL-1521' into Release_2_8_2_Branch
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2014-10-23 Jim ProcterMerge branch 'hotfix/JAL-1521' into develop
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2014-10-23 Jim ProcterJAL-1521 patch is to remove xerces from classpath....
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2014-10-23 Jim ProcterJAL-1521 test to check registry is returning sources
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2014-10-23 Jim Procterpatch fixes JAL-1558
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2014-10-23 Jim ProcterJAL-1503 tag 2.8.1b1 hotfix - last in 2.8.1 line
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2014-10-21 Jim ProcterMerge branch 'forpush/JAL-674_dssp' into develop
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2014-10-21 Jim ProcterJAL-674 check for null vector before ...
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2014-10-21 Jim ProcterMerge branch 'patch_sjf4j_typo' into develop
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2014-10-21 Jim ProcterJAL-1216 update varna dependency string in jalviewLite...
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2014-10-21 Jim ProcterMerge branch 'patch_sjf4j_typo' into develop
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2014-10-21 Jim ProcterJWS-59 JAL-1216 patch broken InstallAnywhere build
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2014-10-21 Jim ProcterMerge branch 'forpush/JAL-674_dssp' into develop
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2014-10-21 Jim ProcterJAL-1551 reinstate missing import
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2014-10-21 Jim ProcterJAL-674 initial implementation - only need to extract...
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2014-10-21 Jim ProcterJAL-1551 crlf
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2014-10-21 Jim ProcterJAL-674 JAL-1551 imports dropped during merge
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2014-10-21 Jim ProcterJAL-1216 update to VARNA 3.91
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2014-10-21 Jim ProcterJAL-674 remove any spurious PDBEntrys generated by...
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2014-10-21 Jim ProcterJAL-674 methods and test for PDB derived annotation...
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2014-10-21 Jim ProcterJAL-674 store ID in MCview.PDBfile calcId string, not...
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2014-10-21 Jim ProcterJAL-674 don't create multiple secondary structure lines...
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2014-10-21 Jim ProcterJAL-674 test for the test for presence of annotation...
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2014-10-21 Jim ProcterJAL-674 test for presence of annotation derived from...
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2014-10-21 Jim ProcterJAL-1551 formatting
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2014-10-21 Jim ProcterJAL-1551 formatting
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2014-10-21 Jim ProcterJAL-674 patch for duplicate row bug
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2014-10-21 Jim ProcterJAL-674 test for duplicate alignment annotation rows...
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2014-10-21 Jim ProcterJAL-1551 formatting
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2014-10-21 Jim ProcterJAL-674 patch to ensure existing annotation is properly...
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2014-10-21 Jim ProcterJAL-674 test to ensure sequence and annotation on sequence...
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2014-10-21 Jim ProcterJAL-1551 source formatting
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2014-10-21 Jim ProcterJAL-674 JAL-207 getTers for aligned sequences in dataset...
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2014-10-21 Jim ProcterJAL-674 refactor method to match and transfer annotation...
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2014-10-21 Jim ProcterJAL-1551 formatting
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2014-10-21 Jim ProcterMerge branch 'features/JAL-1264_showHideAnnotations...
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2014-10-21 Jim ProcterJAL-1551 crlf changes
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2014-10-16 Jim ProcterMerge branch 'feature/JAL-674_dssp' into features/JAL...
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2014-10-15 Jim ProcterMerge branch 'jims_crlf_hell_JAL-1551' of https://source...
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2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto
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2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto
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2014-10-15 Jim ProcterJAL-674 always try to extract secondary structure when...
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2014-10-15 Jim ProcterJAL-674 support preservation of any annotation created...
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2014-10-15 Jim ProcterJAL-674 make transferAnnotation method static
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2014-10-15 Jim ProcterJAL-348 JAL-674 JAL-1564 TODO and implementation error...
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2014-10-15 Jim ProcterJAL-674 patch logic to test whether old and new sequence...
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2014-10-15 Jim ProcterJAL-674 JAL-1305 JAL-348 new liftOver method and test...
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2014-10-14 gmungocJAL-1551 CRLF handling
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2014-10-10 Jim ProcterJAL-674 employ new signature in Annotate3D service...
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2014-10-10 Jim ProcterJAL-674 disable secondary structure annotation when...
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2014-10-10 Jim ProcterJAL-674 typo
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2014-10-10 Jim ProcterJAL-674 new constructors to pass flags about annotating...
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2014-10-10 Jim ProcterJAL-674 parser flag to control secondary structure...
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2014-10-10 Jim ProcterJAL-674 change jalview.io.AlignFile to allow parsing...
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2014-10-09 Jim ProcterMerge branch 'bug/JAL-1558' into develop
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2014-10-09 Jim ProcterMerge branch 'bug/JAL-1558' into Release_2_8_2_Branch
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2014-10-09 Jim Procterpatch fixes JAL-1558
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2014-10-07 Jim ProcterMerge branch 'bugs/JAL-1151' into develop
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2014-10-07 Jim ProcterMerge branch 'bugs/JAL-1151' into Release_2_8_2_Branch
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2014-10-07 Jim ProcterJAL-1557 partial implementation - need to think about...
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2014-10-07 Jim Procterpatch for JAL-1151 - select whole sequence when double...
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2014-10-07 Jim ProcterJAL-1421 remove Vector and pass a list
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2014-10-07 Jim ProcterJAL-1151 source tidy
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2014-10-06 Jim ProcterMerge branch 'JAL-429_phylip-file-support' into develop
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2014-10-06 Jim ProcterMerge branch 'JAL-429_phylip-file-support' into Release_2_8_...
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2014-10-06 Jim ProcterMerge branch 'patch/JAL-848' into JAL-429_phylip-file...
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2014-10-06 Jim ProcterMerge branch 'patch/JAL-848' into Release_2_8_2_Branch
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2014-10-06 Jim ProcterJAL-848 reinstate netbeans files from Phylip patch...
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2014-10-06 Jim ProcterMerge branch 'JAL-429_phylip-file-support' into Release_2_8_...
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2014-10-06 Jim ProcterMerge branch 'Release_2_8_2_Branch' into JAL-429_phylip...
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2014-10-06 Jim ProcterMerge branch 'patch/JAL-1286_JAL-1265' into develop
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2014-10-06 Jim ProcterMerge branch 'patch/JAL-1286_JAL-1265' into Release_2_8_2_Branch
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2014-10-06 Jim ProcterJAL-1286 missing file for testcase where file ends...
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2014-10-06 Jim ProcterJAL-1500 JAL-1265 patch to parse PDB database refs...
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2014-10-06 Jim ProcterMerge branch 'feature/JAL-654_dssp' into develop
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2014-10-06 Jim ProcterMerge branch 'feature/JAL-654_dssp' into Release_2_8_2_Branch
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2014-10-06 Jim ProcterJAL-654 remove any annotation rows for chain specific...
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2014-10-06 Jim ProcterJAL-654 updated pdb db fetcher test to verify the number...
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2014-10-06 Jim ProcterJAL-654 JAL-1264 sequence associated annotation is...
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2014-10-06 Jim ProcterJAL-654 format and refactor test demonstrating PDB...
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2014-10-06 Jim ProcterJAL-1115 TODO remove use of java.util.Vector
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2014-10-06 Jim ProcterJAL-654 javadoc createDatasetSequence and transferAnnotation
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2014-10-06 Jim ProcterJAL-654_dssp formatting and javadoc
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2014-10-03 Jim ProcterMerge branch 'Release_2_8_2_Branch_i18n' into Release_2_8_2_...
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