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2015-04-13	gmungoc	JAL-1695 new property ENABLE_SPLIT_FRAME	commit \| commitdiff \| tree
2015-04-13	gmungoc	JAL-1695 parameter controls whether SplitFrame is enabled	commit \| commitdiff \| tree
2015-04-08	gmungoc	JAL-1684 adjusting parameters for split frame applet...	commit \| commitdiff \| tree
2015-04-08	gmungoc	JAL-1690 scaleProteinAsCdna new applet parameter documented	commit \| commitdiff \| tree
2015-04-08	gmungoc	JAL-1270 protection against NullPointer when run as...	commit \| commitdiff \| tree
2015-04-08	gmungoc	JAL-1691 applet SplitFrame scrolling; pull up of 5...	commit \| commitdiff \| tree
2015-04-08	gmungoc	JAL-1270 separated standalone tests out of Jws2ParamView...	commit \| commitdiff \| tree
2015-04-07	gmungoc	JAL-1270 test added	commit \| commitdiff \| tree
2015-04-07	gmungoc	JAL-1691 linked scrollling in split frame (Desktop)	commit \| commitdiff \| tree
2015-04-07	gmungoc	JAL-1691 defensive check for null	commit \| commitdiff \| tree
2015-04-02	gmungoc	JAL-1690 'scale protein as cDNA' options in Preferences...	commit \| commitdiff \| tree
2015-04-01	gmungoc	JAL-845 fixed start/end range of a mapped SequenceGroup	commit \| commitdiff \| tree
2015-04-01	gmungoc	JAL-1264 reinstate Show annotations menu item	commit \| commitdiff \| tree
2015-03-30	gmungoc	JAL-1264 remove broken applet build dependencies	commit \| commitdiff \| tree
2015-03-30	gmungoc	JAL-1270 fall back on compbio if no localhost:8080...	commit \| commitdiff \| tree
2015-03-30	gmungoc	JAL-1596 refactoring to allow unit tests to start and...	commit \| commitdiff \| tree
2015-03-30	gmungoc	JAL-1270 Cache.logger initialisation added	commit \| commitdiff \| tree
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	commit \| commitdiff \| tree
2015-03-26	gmungoc	JAL-1688 compiler warnings removed	commit \| commitdiff \| tree
2015-03-26	gmungoc	JAL-1665 getSequenceFeatures; Desktop.getAlignFrames...	commit \| commitdiff \| tree
2015-03-25	gmungoc	JAL-1270 System.exit(0) changed to fail() so as not...	commit \| commitdiff \| tree
2015-02-19	gmungoc	JAL-1665 refactored Sequence.getSequenceFeatures	commit \| commitdiff \| tree
2015-01-27	gmungoc	JAL-1588 new class renamed	commit \| commitdiff \| tree
2015-01-26	gmungoc	Merge branch 'features/JAL-1588saveChimeraSession'...	commit \| commitdiff \| tree
2015-01-26	gmungoc	JAL-1588 restoring saved Chimera session(s)	commit \| commitdiff \| tree
2015-01-23	gmungoc	JAL-1588 first working (?) restore of Chimera session...	commit \| commitdiff \| tree
2015-01-14	gmungoc	JAL-1629 .jar option removed from Alignment File Save...	commit \| commitdiff \| tree
2015-01-09	gmungoc	JAL-1588 check Chimera session file still exists	commit \| commitdiff \| tree
2015-01-08	gmungoc	JAL-1588 part work save/restore of Chimera session	commit \| commitdiff \| tree
2015-01-07	gmungoc	JAL-1551 formatting applied	commit \| commitdiff \| tree
2015-01-07	gmungoc	JAL-1588 refactoring to StructureViewerBase and related	commit \| commitdiff \| tree
2015-01-06	gmungoc	JAL-1588 refactoring prior to 'save Chimera project'	commit \| commitdiff \| tree
2014-12-28	gmungoc	Merge branch 'features/JAL-1596ChimeraREST' into develop	commit \| commitdiff \| tree
2014-12-14	Mungo Carstairs	JAL-1596 set HTTP 1.1 in HttpClient	commit \| commitdiff \| tree
2014-12-09	gmungoc	JAL-1616 loading of datasets from XML patched	commit \| commitdiff \| tree
2014-12-09	gmungoc	JAL-1616 loading of datasets from XML patched	commit \| commitdiff \| tree
2014-12-05	gmungoc	JAL-1614 flag 'protein' removed	commit \| commitdiff \| tree
2014-12-05	gmungoc	JAL-1614 flag 'protein' removed	commit \| commitdiff \| tree
2014-12-05	gmungoc	JAL-1609 refactored colour by sequence command, now...	commit \| commitdiff \| tree
2014-12-05	gmungoc	Merge branch 'Release_2_8_2_Branch' of local repository...	commit \| commitdiff \| tree
2014-12-03	gmungoc	Merge branch 'Release_2_8_2_Branch' of https://source...	commit \| commitdiff \| tree
2014-12-03	gmungoc	JAL-1609 wip on Chimera colour by sequence	commit \| commitdiff \| tree
2014-12-01	gmungoc	JAL-429 Phylip added to help page	commit \| commitdiff \| tree
2014-12-01	gmungoc	JAL-1544 typos/formatting in help (and Phylip added)	commit \| commitdiff \| tree
2014-11-28	gmungoc	JAL-1610 check reference annotations against alignment...	commit \| commitdiff \| tree
2014-11-28	gmungoc	JAL-1596 first REST interface coded	commit \| commitdiff \| tree
2014-11-27	gmungoc	JAL-1603 if Chimera selected in Preferences, warn if...	commit \| commitdiff \| tree
2014-11-27	gmungoc	Merge branch 'Release_2_8_2_Branch' of https://source...	commit \| commitdiff \| tree
2014-11-27	gmungoc	Merge branch 'Release_2_8_2_Branch' of https://source...	commit \| commitdiff \| tree
2014-11-26	gmungoc	JAL-1528 NullPointer check / more informative PDB fetch...	commit \| commitdiff \| tree
2014-11-25	gmungoc	JFAL-1594 fix Undo bug; enum EditCommand.Action; basic...	commit \| commitdiff \| tree
2014-11-21	gmungoc	JAL-1528 found and readded Colour by Chain ('rainbow...	commit \| commitdiff \| tree
2014-11-21	gmungoc	Merge branch 'Release_2_8_2_Branch' of https://source...	commit \| commitdiff \| tree
2014-11-19	gmungoc	JAL-1342 new command-line parameter -jabaws <URL>	commit \| commitdiff \| tree
2014-11-18	gmungoc	JAL-1349 rebuild Web Service menu after add/delete...	commit \| commitdiff \| tree
2014-11-18	gmungoc	JAL-1582 removing finalize() as may have unexpected...	commit \| commitdiff \| tree
2014-11-18	gmungoc	JAL-1582 quicker tooltip on service presets (and code...	commit \| commitdiff \| tree
2014-11-18	gmungoc	JAL-1349 refresh menu presets after 'create' new	commit \| commitdiff \| tree
2014-11-18	gmungoc	JAL-1580 Chimera path tooltip, removed focusListener	commit \| commitdiff \| tree
2014-11-18	gmungoc	Merge branch 'Release_2_8_2_Branch' of https://source...	commit \| commitdiff \| tree
2014-11-17	gmungoc	JAL-1573 unit test added to verify Help target enum...	commit \| commitdiff \| tree
2014-11-17	gmungoc	JAL-1581 Tooltip slimmed down, Help button added on...	commit \| commitdiff \| tree
2014-11-17	gmungoc	JAL-1293 hide/show sequence annotations with hide/reveal...	commit \| commitdiff \| tree
2014-11-17	gmungoc	JAL-1586 chimera file chooser added, validate on OK...	commit \| commitdiff \| tree
2014-11-17	gmungoc	JAL-1580 size parameters dialog to height of Desktop	commit \| commitdiff \| tree
2014-11-14	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2014-11-14	gmungoc	JAL-1528 Chimera Help doc + fixes to setting colours	commit \| commitdiff \| tree
2014-11-13	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2014-11-13	gmungoc	merge	commit \| commitdiff \| tree
2014-11-13	gmungoc	JAL-1528 new Preference CHIMERA_PATH (Preferences ...	commit \| commitdiff \| tree
2014-11-13	gmungoc	JAL-1528 Chimera tidy errors, focus after align, close...	commit \| commitdiff \| tree
2014-11-12	gmungoc	JAL-1528 bug fixes and adjustments to Chimera interface	commit \| commitdiff \| tree
2014-11-12	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2014-11-11	gmungoc	JAL-1527 opening a project saved with JMol should use...	commit \| commitdiff \| tree
2014-11-06	gmungoc	JAL-1152 use a proper RadioButton not a faked one	commit \| commitdiff \| tree
2014-11-05	gmungoc	JAL-674 Prefences tweaks incl help documentation for...	commit \| commitdiff \| tree
2014-11-05	gmungoc	JAL-1152 new Structure tab on Preferences for SS derivation...	commit \| commitdiff \| tree
2014-11-04	gmungoc	JAL-1152 help updates for Preferences	commit \| commitdiff \| tree
2014-11-04	gmungoc	JAL-1152 annotation sort algorithm optimisation	commit \| commitdiff \| tree
2014-11-03	gmungoc	Merge branch 'features/JAL-1152annotationSorting' of...	commit \| commitdiff \| tree
2014-11-03	gmungoc	JAL-1152 annotation sorting preferences and help documentation	commit \| commitdiff \| tree
2014-10-31	gmungoc	JAL-1152 bug fix for 'no sort' case + tests for autocalc...	commit \| commitdiff \| tree
2014-10-31	gmungoc	JAL-1152 menu tweaks plus new option to put Autocalc...	commit \| commitdiff \| tree
2014-10-30	gmungoc	JAL-1152 with sticky annotation sort order that updates...	commit \| commitdiff \| tree
2014-10-30	gmungoc	JAL-1152 prototype of new Annotations menu with sort...	commit \| commitdiff \| tree
2014-10-28	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2014-10-28	gmungoc	JAL-1264 refactor to add menu options to _both_ sequence...	commit \| commitdiff \| tree
2014-10-23	gmungoc	JAL-1264 new unit tests	commit \| commitdiff \| tree
2014-10-23	gmungoc	JAL-1264 further refactoring and tests	commit \| commitdiff \| tree
2014-10-22	gmungoc	JAL-1304 repositioned tab to correct example	commit \| commitdiff \| tree
2014-10-13	gmungoc	JAL-1264 unneeded setup removed	commit \| commitdiff \| tree
2014-10-13	gmungoc	JAL-1264 unit test corrected	commit \| commitdiff \| tree
2014-10-12	gmungoc	JAL-1544 SEQENCE -> SEQUENCE	commit \| commitdiff \| tree
2014-10-12	gmungoc	JAL-1264 help updates for show/hide annotations on	commit \| commitdiff \| tree
2014-10-10	gmungoc	JAL-1551 project-specific settings	commit \| commitdiff \| tree
2014-10-10	gmungoc	JAL-1551 proposed project settings for code cleanup...	commit \| commitdiff \| tree
2014-10-10	gmungoc	JAL-1264 unit tests	commit \| commitdiff \| tree
2014-10-10	gmungoc	Suppressed test that needs user interaction to allow...	commit \| commitdiff \| tree
2014-10-10	gmungoc	JAL-1551 CRLF handling	commit \| commitdiff \| tree
2014-10-10	gmungoc	JAL-1264 show/hide annotations, plus merged changes	commit \| commitdiff \| tree
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