| 2023-01-26 |
Ben Soares | JAL-629 example files from nf-core
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| 2023-01-26 |
Ben Soares | JAL-629 helper eclipse CLI run
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| 2023-01-26 |
Ben Soares | JAL-629 adjust arg type for tempfac-shading -- was...
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| 2023-01-23 |
Ben Soares | JAL-629 Attempts to add PAE to structure. --headless...
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| 2023-01-18 |
Ben Soares | JAL-629 make sequence id key 'seqid'
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| 2023-01-11 |
Ben Soares | JAL-629 added Alphafold cif, pdb and PAE json files...
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| 2023-01-11 |
Ben Soares | JAL-629 refactoring TFType. Remove i18n identification...
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| 2022-12-19 |
Ben Soares | JAL-629 Add image output and quit
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| 2022-12-15 |
Ben Soares | JAL-629 move SubId to more logical place. Attempt removal...
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| 2022-12-14 |
Ben Soares | JAL-629 Open Structure Viewer from cmdline
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| 2022-12-09 |
Ben Soares | JAL-629 null check, fixed tests!
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| 2022-12-08 |
Ben Soares | JAL-629 fix opening files
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| 2022-12-08 |
Ben Soares | JAL-629 stray code deleted
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| 2022-12-08 |
Ben Soares | JAL-629 Allow attachment of pAE file to a particular...
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| 2022-12-05 |
Ben Soares | JAL-629 implementation of --tempfac options
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| 2022-11-29 |
Ben Soares | JAL-4101 Updated Rfam* tests
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| 2022-11-29 |
Ben Soares | JAL-4101 Updated DEFAULT_RFAM_BASEURL
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| 2022-11-23 |
Ben Soares | JAL-629 Doing things with the command line arguments
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| 2022-10-27 |
Ben Soares | JAL-4083 don't need globalUseScriptWait after all,...
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commit | commitdiff | tree |
| 2022-10-27 |
Ben Soares | JAL-4083 only set globalUseScriptWait if needed
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| 2022-10-27 |
Ben Soares | JAL-4083 Use jmolViewer.scriptWait instead of jmolViewer...
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| 2022-10-26 |
Ben Soares | Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...
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| 2022-10-26 |
Ben Soares | JAL-3416 (and others) increasing number of STDERR lines...
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| 2022-10-25 |
Ben Soares | JAL-3416 Making FlatLaF default for macs due to a problem...
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| 2022-10-11 |
Ben Soares | JAL-4014 Changed gecos display names to match labels...
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| 2022-08-23 |
Ben Soares | JAL-4014 JAL-4063 Added gecos colourScheme names (INFO...
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| 2022-08-01 |
Ben Soares | JAL-4056 fixed tl;dr section of doc/building.md
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| 2022-07-26 |
Ben Soares | JAL-4036 Fixed the virus_host_id query field
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| 2022-07-26 |
Ben Soares | JAL-4036 Added text to help about different number...
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| 2022-07-25 |
Ben Soares | JAL-4036 updated help about new UniProt API
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| 2022-07-25 |
Ben Soares | JAL-4036 moved a comment block
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| 2022-07-25 |
Ben Soares | JAL-4034 button looks better also on other OSes with...
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| 2022-07-24 |
Ben Soares | JAL-4034 add round corners to 3DB confirmation button...
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| 2022-07-22 |
Ben Soares | JAL-4036 Changes made from code review CR-JAL-265
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| 2022-07-22 |
Ben Soares | JAL-4036 Add getDbName to the GFTSPanelI and add an...
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| 2022-07-22 |
Ben Soares | JAL-4036 removing the query field code from the dropdown...
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| 2022-07-21 |
Ben Soares | JAL-4036 Don't autosearch changing index when autosearch...
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commit | commitdiff | tree |
| 2022-07-21 |
Ben Soares | JAL-4036 add search fieldname to dropdown list
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| 2022-07-21 |
Ben Soares | JAL-4036 removed often duplicated pluralisation in...
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| 2022-07-21 |
Ben Soares | JAL-4036 New configuration, target and pagination process...
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| 2022-07-15 |
Ben Soares | JAL-4034 Use the new non-modal JDialog for 3DBeacons...
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| 2022-07-15 |
Ben Soares | JAL-4034 Allow request for non-modal JDialog, which...
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| 2022-07-12 |
Ben Soares | JAL-4034 change to jalview property name
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| 2022-07-12 |
Ben Soares | JAL-4034 showConfirmDialog works for both desktop and...
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| 2022-07-11 |
Ben Soares | JAL-4034 Non-blocking 3D Beacons query after warning...
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commit | commitdiff | tree |
| 2022-07-11 |
Ben Soares | JAL-4034 allow a jalview_property to set the threshold...
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| 2022-06-28 |
Ben Soares | Merge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS_APQH...
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commit | commitdiff | tree |
| 2022-06-28 |
Ben Soares | JAL-1988 Don't put Quit in the File menu if there's...
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| 2022-06-23 |
Ben Soares | Merge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS_APQH...
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commit | commitdiff | tree |
| 2022-06-23 |
Ben Soares | JAL-1988 Check for setHandler capability to avoid About...
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| 2022-06-17 |
Ben Soares | JAL-3027 Avoid FlatLAF Desktop class is JalviewJS
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commit | commitdiff | tree |
| 2022-06-13 |
Ben Soares | JAL-1988 Hack to ensure Quit dialog box is moved to...
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| 2022-06-13 |
Ben Soares | JAL-1988 Moved APQHandlers to jalview.jbgui and called...
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| 2022-06-13 |
Ben Soares | Merge branch 'develop' into improvement/JAL-1988+JAL...
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commit | commitdiff | tree |
| 2022-06-13 |
Ben Soares | JAL-4004 Fix missing whatsNew.html when not building...
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commit | commitdiff | tree |
| 2022-06-13 |
Ben Soares | JAL-3416 remove flat as default for linux
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| 2022-06-13 |
Ben Soares | JAL-1988 JAL-3416 Using the flatlaf-extras About, Preference...
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| 2022-06-13 |
Ben Soares | JAL-3416 Added some mac specific FlatLAF settings....
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| 2022-06-13 |
Ben Soares | JAL-3416 updated FlatLAF libraries to 2.3. Added the...
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| 2022-06-07 |
Ben Soares | JAL-4020 class formatting
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| 2022-06-07 |
Ben Soares | JAL-4020 added the \Scripts\pymol.exe. to the pathList
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| 2022-06-06 |
Ben Soares | JAL-4020 Added the +2 arg for PyMOLWin.exe allowing...
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| 2022-06-06 |
Ben Soares | JAL-4020 updated tests
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commit | commitdiff | tree |
| 2022-06-06 |
Ben Soares | JAL-4020 class reformatting
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commit | commitdiff | tree |
| 2022-06-06 |
Ben Soares | JAL-4020 Added path search for global installation...
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| 2022-06-06 |
Ben Soares | JAL-4020 Added search for PyMOLWinWithConsole.bat ...
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| 2022-05-12 |
Ben Soares | Merge branch 'develop' into issues/JAL-3553+JAL-3978...
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| 2022-05-12 |
Ben Soares | JAL-4014 4 gecos colour schemes added to help documentation
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commit | commitdiff | tree |
| 2022-05-12 |
Ben Soares | JAL-4014 4 gecos colour schemes added
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commit | commitdiff | tree |
| 2022-05-10 |
Ben Soares | JAL-4004 cosmetic improvements for Java documentation...
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| 2022-05-09 |
Ben Soares | JAL-4004 gradle task releasesTemplates now part of...
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| 2022-05-09 |
Ben Soares | JAL-4004 working templates and generated whatsNew.html...
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| 2022-05-09 |
Ben Soares | JAL-4004 remove stray empty h3 headers
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| 2022-05-09 |
Ben Soares | JAL-4004 gradle releasesTemplates builds releases.html
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| 2022-05-09 |
Ben Soares | JAL-4004 Temporary mechanism to add JalviewJS link...
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| 2022-05-09 |
Ben Soares | JAL-3989 Code tidying, added JVL_HEADER for older versions...
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| 2022-05-05 |
Ben Soares | JAL-4004 Now generating hugo files from help/markdown/...
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commit | commitdiff | tree |
| 2022-05-04 |
Ben Soares | JAL-4004 existing releases-VERSION.md files and releases...
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commit | commitdiff | tree |
| 2022-05-04 |
Ben Soares | JAL-4004 locations for markdown to go into whatsnew...
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commit | commitdiff | tree |
| 2022-05-03 |
Ben Soares | JAL-3989 improved parsing and formatting now using...
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| 2022-05-03 |
Ben Soares | JAL-1544 minor errors in releases.html and one missing...
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commit | commitdiff | tree |
| 2022-04-29 |
Ben Soares | JAL-3989 small improvements to output markdown
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commit | commitdiff | tree |
| 2022-04-28 |
Ben Soares | JAL-3989 add in issue shortcodes to the archive version...
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commit | commitdiff | tree |
| 2022-04-27 |
Ben Soares | JAL-1544 version number typo, probably copy and paste
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| 2022-04-27 |
Ben Soares | JAL-3989 Populate template files for hugo build: archive...
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| 2022-04-25 |
Ben Soares | JAL-3989 moved getdown build dirs to build/website...
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| 2022-04-25 |
Ben Soares | JAL-3989 Independent creation of JSON installer sections
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| 2022-04-25 |
Ben Soares | JAL-3978 clean up unnecessary local variables for JALVIEW_VE...
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| 2022-04-22 |
Ben Soares | JAL-3989 Changed to using com.google.common.hash for...
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| 2022-04-21 |
Ben Soares | Merge branch 'develop' into merge/JAL-3978+JAL-3553...
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| 2022-04-21 |
Ben Soares | Merge branch 'develop' into task/JAL-3991_check_actual_JAVA_...
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commit | commitdiff | tree |
| 2022-04-06 |
Ben Soares | JAL-3991 Made info displayed only when needed (Java...
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commit | commitdiff | tree |
| 2022-04-06 |
Ben Soares | JAL-3991 Added information output about the slightly...
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commit | commitdiff | tree |
| 2022-04-06 |
Ben Soares | JAL-3991 JAVA_COMPILE_VERSION put into build_properties...
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commit | commitdiff | tree |
| 2022-04-05 |
Ben Soares | JAL-3989 slight refactor of build.gradle, add more...
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commit | commitdiff | tree |
| 2022-04-04 |
Ben Soares | JAL-3989 fix a build date once in build.gradle, not...
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| 2022-03-31 |
Ben Soares | Merge branch 'task/JAL-3553_improved_install4j_output_txt...
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commit | commitdiff | tree |
| 2022-03-31 |
Ben Soares | Merge branch 'develop' into improvement/JAL-3978_add_gradle_...
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commit | commitdiff | tree |
| 2022-03-21 |
Ben Soares | JAL-3416 Updated FlatLaF to 2.1
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commit | commitdiff | tree |
| 2022-03-18 |
Ben Soares | JAL-3978 Using getdowninstanceappdir and getdowninstanceappb...
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