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2015-09-16	gmungoc	JAL-1859 removed temporary test copy of pdb file	commit \| commitdiff \| tree
2015-09-16	gmungoc	JAL-1859 refactor duplicated code to new HttpUtils...	commit \| commitdiff \| tree
2015-09-16	gmungoc	JAL-1859 code tidy, remove 'absolute URL' option	commit \| commitdiff \| tree
2015-09-16	gmungoc	JAL-1859 working variable to aid inspection in debugger	commit \| commitdiff \| tree
2015-09-16	gmungoc	JAL-1859 try 1gaq.txt in /lang so it is in the built jar	commit \| commitdiff \| tree
2015-09-16	gmungoc	JAL-1859 debug logging removed	commit \| commitdiff \| tree
2015-09-16	gmungoc	JAL-1859 revert to resolving full path to PDB file	commit \| commitdiff \| tree
2015-09-16	gmungoc	JAL-1859 refactor addProtocol, setProtocolState as...	commit \| commitdiff \| tree
2015-09-16	gmungoc	JAL-1859 temporary debug output	commit \| commitdiff \| tree
2015-09-15	gmungoc	JAL-1859 use unresolved PDB filename	commit \| commitdiff \| tree
2015-09-15	gmungoc	JAL-1859 strip file name from applet documentbase	commit \| commitdiff \| tree
2015-09-15	gmungoc	JAL-1859 refactoring / debugging added	commit \| commitdiff \| tree
2015-09-14	gmungoc	JAL-1865 fixed so initial state of annotation sort...	commit \| commitdiff \| tree
2015-09-14	gmungoc	JAL-1851 add retrieved sequence's start (-1) to match...	commit \| commitdiff \| tree
2015-09-14	gmungoc	JAL-1880 updated mapping tests to ensure they handle...	commit \| commitdiff \| tree
2015-09-14	gmungoc	JAL-1270 test added for separatorListToArray	commit \| commitdiff \| tree
2015-09-14	gmungoc	JAL-1880 handle sequence offsets properly when mapping...	commit \| commitdiff \| tree
2015-09-14	gmungoc	JAL-1684 align added alignment to match original in...	commit \| commitdiff \| tree
2015-09-14	gmungoc	JAL-1684 align added alignment to match original in...	commit \| commitdiff \| tree
2015-09-14	gmungoc	JAL-1684 ensure cDNA placed above protein in SplitFrame	commit \| commitdiff \| tree
2015-09-09	gmungoc	JAL-857 debug=true for Jmol example diagnosis	commit \| commitdiff \| tree
2015-09-09	gmungoc	JAL-857 added debug output to track down document base...	commit \| commitdiff \| tree
2015-09-09	gmungoc	JAL-1619 update applet.currentAlignFrame on any menu...	commit \| commitdiff \| tree
2015-09-09	gmungoc	JAL-1619 'align protein as cDNA' now leaves unmapped...	commit \| commitdiff \| tree
2015-09-08	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-09-08	gmungoc	JAL-1859 debug output of pdb mappings (mine and SSMs)	commit \| commitdiff \| tree
2015-09-08	gmungoc	JAL-1859 reverted to signed JalviewApplet.jar!	commit \| commitdiff \| tree
2015-09-08	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-09-08	gmungoc	JAL-1859 Jmol applet black background; fix _jvmols...	commit \| commitdiff \| tree
2015-09-07	gmungoc	JAL-1859 Jmol linked applet updated to use Jmol2.js	commit \| commitdiff \| tree
2015-09-07	gmungoc	JAL-1636 translate stop codon as '', mouseover as...	commit \| commitdiff \| tree
2015-09-07	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-09-07	gmungoc	JAL-1152 check 'autocalculated' not 'null sequenceRef...	commit \| commitdiff \| tree
2015-09-04	gmungoc	JAL-1859 jmolFindTarget not JmolFindTarget	commit \| commitdiff \| tree
2015-09-04	gmungoc	JAL-1859 embedded Jmol applet example updated for Jmol...	commit \| commitdiff \| tree
2015-09-03	gmungoc	JAL-1859 removed unneeded dependency on package not...	commit \| commitdiff \| tree
2015-09-03	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-09-03	gmungoc	JAL-1690 scaleProteinAsCdna new optional attribute...	commit \| commitdiff \| tree
2015-09-03	gmungoc	JAL-1828 lookup table to convert MSE to MET when parsing...	commit \| commitdiff \| tree
2015-09-03	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-09-02	gmungoc	JAL-1544 spelling	commit \| commitdiff \| tree
2015-09-02	gmungoc	JAL-1355 User error text externalised to message bundle	commit \| commitdiff \| tree
2015-09-02	gmungoc	JAL-1768 set initial 'enabled' state for id width label...	commit \| commitdiff \| tree
2015-09-02	gmungoc	JAL-1264 test made i18n robust	commit \| commitdiff \| tree
2015-09-02	gmungoc	JAL-1768 enable fixed width output when auto-width...	commit \| commitdiff \| tree
2015-09-02	gmungoc	JAL-1843 fixed input/add from textbox; added @Override...	commit \| commitdiff \| tree
2015-09-02	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-09-02	gmungoc	JAL-1619 additions, standardised menu item symbols	commit \| commitdiff \| tree
2015-09-02	gmungoc	JAL-1681 mention of cDNA consensus added	commit \| commitdiff \| tree
2015-09-02	gmungoc	JAL-1673 new test to verify transferRESNUMFeatures()	commit \| commitdiff \| tree
2015-09-02	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-09-01	gmungoc	JAL-1693 split frame opened for get xrefs, translate...	commit \| commitdiff \| tree
2015-09-01	gmungoc	JAL-1672 additional assertions added	commit \| commitdiff \| tree
2015-09-01	gmungoc	JAL-1355 user error message text externalised	commit \| commitdiff \| tree
2015-08-28	gmungoc	JAL-1836 temporary workaround for negative resNumIns...	commit \| commitdiff \| tree
2015-08-27	gmungoc	JAL-1270 comments added regarding required remote service	commit \| commitdiff \| tree
2015-08-27	gmungoc	JAL-1759 updated unit test for removal of trim on Atom...	commit \| commitdiff \| tree
2015-08-27	gmungoc	JAL-1830 tests relocated to AlignViewportTest after...	commit \| commitdiff \| tree
2015-08-27	gmungoc	JAL-1627 updated expected tooltip text in unit test	commit \| commitdiff \| tree
2015-08-27	gmungoc	JAL-1830 unit tests for removing (or not) mappings...	commit \| commitdiff \| tree
2015-08-27	gmungoc	JAL-1830 refactored so no jalview.gui references from...	commit \| commitdiff \| tree
2015-08-27	gmungoc	JAL-845 compacting duplicated code	commit \| commitdiff \| tree
2015-08-27	gmungoc	JAL-1611 debug sysout suppressed	commit \| commitdiff \| tree
2015-08-27	gmungoc	JAL-1544 message label corrected	commit \| commitdiff \| tree
2015-08-27	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-08-27	gmungoc	JAL-1701 help page for Split Frame view linked in	commit \| commitdiff \| tree
2015-08-27	gmungoc	JAL-1544 'Jalview' consistently capitalised	commit \| commitdiff \| tree
2015-08-27	gmungoc	JAL-892 JAL-1764 Varna and Chimera also saved to project...	commit \| commitdiff \| tree
2015-08-27	gmungoc	JAL-892 saved to project; external help link updated	commit \| commitdiff \| tree
2015-08-27	gmungoc	JAL-1727 added EBI mirror of DAS registry	commit \| commitdiff \| tree
2015-08-27	gmungoc	JAL-1596 JAL-1725 JAL-1588 updates for selection in...	commit \| commitdiff \| tree
2015-08-27	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-08-27	gmungoc	JAL-1725 restrict Jalview's Jetty server to localhost	commit \| commitdiff \| tree
2015-08-26	gmungoc	JAL-1830 dropped reference counts for mappings, instead...	commit \| commitdiff \| tree
2015-08-26	gmungoc	JAL-1596 check for null pointer (thread running after...	commit \| commitdiff \| tree
2015-08-26	gmungoc	JAL-1270 test separated out of JalviewChimeraView	commit \| commitdiff \| tree
2015-08-26	gmungoc	JAL-1270 corrected path to test properties file	commit \| commitdiff \| tree
2015-08-26	gmungoc	JAL-1270 separated Jmol and Chimera tests to avoid...	commit \| commitdiff \| tree
2015-08-26	gmungoc	JAL-1759 updated unit test for removal of trim of Atom...	commit \| commitdiff \| tree
2015-08-26	gmungoc	JAL-1840 correct setting status bar for structure mouseover	commit \| commitdiff \| tree
2015-08-26	gmungoc	JAL-1759 added check for null (console 'history')	commit \| commitdiff \| tree
2015-08-26	gmungoc	Fix to use correct resource bundle entry	commit \| commitdiff \| tree
2015-08-26	gmungoc	JAL-1759 corrected syntax for 'atom picked' callback...	commit \| commitdiff \| tree
2015-08-25	gmungoc	JAL-1780 just a spelling change	commit \| commitdiff \| tree
2015-08-25	gmungoc	JAL-1674 more correct status bars in splitframe mouseover...	commit \| commitdiff \| tree
2015-08-24	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-08-24	gmungoc	JAL-1759 removed trim() of Atom.resNumIns as not backwards...	commit \| commitdiff \| tree
2015-08-24	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-08-24	gmungoc	JAL-845 error message on syserr if supplied files don...	commit \| commitdiff \| tree
2015-08-24	gmungoc	remove mentions of non-functional RNAInteraction colourscheme	commit \| commitdiff \| tree
2015-08-20	gmungoc	JAL-1833 added unit tests (some failing) for wrapToolitp	commit \| commitdiff \| tree
2015-08-19	gmungoc	JAL-1782 don't save TESTNG output summary to git	commit \| commitdiff \| tree
2015-08-19	gmungoc	JAL-1725 log to sysout when listener shuts down	commit \| commitdiff \| tree
2015-08-19	gmungoc	JAL-1742 suppress 'add chain' option for Jmol, pull...	commit \| commitdiff \| tree
2015-08-17	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-08-17	gmungoc	JAL-1800 separated SearchResults.getCharacters() from...	commit \| commitdiff \| tree
2015-08-17	gmungoc	JAL-1270 testIsMappable added	commit \| commitdiff \| tree
2015-08-17	gmungoc	JAL-1805 corrected javadoc only	commit \| commitdiff \| tree
2015-08-17	gmungoc	JAL-1829 JAL-1830 refactoring for correct mapping ...	commit \| commitdiff \| tree
2015-08-17	gmungoc	JAL-1800 smarter matching when following mouseover...	commit \| commitdiff \| tree
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