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2017-08-14	Jim Procter	JAL-2335 filterNonStandardResidues configurable for...	commit \| commitdiff \| tree
2017-08-14	Jim Procter	Merge branch 'patch/JAL-2116_java9' into develop	commit \| commitdiff \| tree
2017-08-14	Jim Procter	JAL-2116 switch to java.se.ee https://bugs.openjdk...	commit \| commitdiff \| tree
2017-08-14	Jim Procter	Merge branch 'patch/JAL-2663_filterAACons' into develop	commit \| commitdiff \| tree
2017-08-14	Jim Procter	Merge branch 'develop' of http://source.jalview.org...	commit \| commitdiff \| tree
2017-08-14	Jim Procter	JAL-2663 flag and filter to exclude non-standard amino...	commit \| commitdiff \| tree
2017-08-14	Jim Procter	JAL-2663 source formatting	commit \| commitdiff \| tree
2017-08-10	Jim Procter	JAL-2116 try '=' syntax http://jigsaw-dev.1059479.n5...	commit \| commitdiff \| tree
2017-08-10	Jim Procter	JAL-2116 test java 9 only JNLP launch	commit \| commitdiff \| tree
2017-08-10	Jim Procter	JAL-2116 explicit replace j2se element with a java9...	commit \| commitdiff \| tree
2017-08-10	Jim Procter	JAL-2116 java9 modules dependency for JNLP file	commit \| commitdiff \| tree
2017-08-10	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-08-10	Jim Procter	JAL-2418 set final release date to 15th August 2017... Signed-off-by: Jim Procter <jprocter@issues.jalview.org>	commit \| commitdiff \| tree
2017-08-10	Jim Procter	JAL-2418 typo in release notes	commit \| commitdiff \| tree
2017-08-10	Jim Procter	JAL-2418 known defect for JAL-2321 in release notes	commit \| commitdiff \| tree
2017-08-10	Jim Procter	JAL-2418 reorganised release notes to topic sections...	commit \| commitdiff \| tree
2017-08-09	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-08-09	Jim Procter	JAL-2418 JAL-2398 JAL-2397 simpler documentation for...	commit \| commitdiff \| tree
2017-08-09	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-08-09	Jim Procter	JAL-2397 JAL-2398 documentation for reinstating legacy...	commit \| commitdiff \| tree
2017-08-09	Jim Procter	JAL-2426 Rfam download suffix	commit \| commitdiff \| tree
2017-08-09	Jim Procter	JAL-2426 JAL-1270 report Xfam download URL used if...	commit \| commitdiff \| tree
2017-08-09	Jim Procter	JAL-2425 raw stockholm download URLs	commit \| commitdiff \| tree
2017-08-09	Jim Procter	JAL-1270 testProps should also enable debug logging	commit \| commitdiff \| tree
2017-08-09	Jim Procter	JAL-2425 test for alignment metadata retrieved from...	commit \| commitdiff \| tree
2017-08-09	Jim Procter	JAL-2425 remove overloaded getSequenceRecords method...	commit \| commitdiff \| tree
2017-08-09	Jim Procter	JAL-2418 release notes	commit \| commitdiff \| tree
2017-08-09	Jim Procter	JAL-2418 more release notes	commit \| commitdiff \| tree
2017-08-09	Jim Procter	JAL-2418 JAL-2611 and rejigged overview documentation	commit \| commitdiff \| tree
2017-08-09	Jim Procter	Merge branch 'bug/JAL-2634' into develop	commit \| commitdiff \| tree
2017-08-09	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-08-07	Jim Procter	Merge branch 'bug/JAL-2592userDefinedScheme' into develop	commit \| commitdiff \| tree
2017-08-07	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-08-07	Jim Procter	JAL-2418 JAL-2468 known issue	commit \| commitdiff \| tree
2017-08-07	Jim Procter	JAL-2482 JAL-2487 documented in release notes	commit \| commitdiff \| tree
2017-08-07	Jim Procter	JAL-2482 release notes	commit \| commitdiff \| tree
2017-08-07	Jim Procter	JAL-2418 release notes formatting	commit \| commitdiff \| tree
2017-08-07	Jim Procter	JAL-2418 release notes	commit \| commitdiff \| tree
2017-08-07	Jim Procter	JAL-2418 typo and formatting of search.html	commit \| commitdiff \| tree
2017-08-07	Jim Procter	JAL-1648 documentation of search history for Find command	commit \| commitdiff \| tree
2017-08-07	Jim Procter	JAL-2418 reformatting and scripting section in what...	commit \| commitdiff \| tree
2017-08-07	Jim Procter	JAL-2418 release notes	commit \| commitdiff \| tree
2017-08-07	Jim Procter	JAL-2418 formatting	commit \| commitdiff \| tree
2017-08-07	Jim Procter	JAL-1476 JAL-2418 insufficient columns for superposition...	commit \| commitdiff \| tree
2017-08-04	Jim Procter	JAL-2418 JAL-1632 JAL-2416 calculations dialog documentation...	commit \| commitdiff \| tree
2017-08-04	Jim Procter	JAL-2418 new features in release notes JAL-1933 JAL...	commit \| commitdiff \| tree
2017-08-04	Jim Procter	JAL-2418 release notes	commit \| commitdiff \| tree
2017-08-04	Jim Procter	JAL-1551 JAL-2418 reformat releases.html to remove...	commit \| commitdiff \| tree
2017-08-04	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-08-04	Jim Procter	Merge branch 'develop' into documentation/JAL-2418_release2102	commit \| commitdiff \| tree
2017-08-04	gmungoc	JAL-2500 JAL-2365 lightGray changed to lightgray for...	commit \| commitdiff \| tree
2017-08-04	gmungoc	JAL-2500 JAL-2365 lightGray changed to gray in example...	commit \| commitdiff \| tree
2017-08-03	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-08-03	Jim Procter	Merge branch 'develop' into documentation/JAL-2418_release2102	commit \| commitdiff \| tree
2017-08-03	Jim Procter	Merge branch 'develop' of http://source.jalview.org...	commit \| commitdiff \| tree
2017-08-03	Jim Procter	JAL-2418 what’s new - faster PCA, calculations UI and...	commit \| commitdiff \| tree
2017-08-03	Jim Procter	JAL-2418 release notes	commit \| commitdiff \| tree
2017-08-03	Jim Procter	JAL-1551 updated source code formatting settings from...	commit \| commitdiff \| tree
2017-08-03	Jim Procter	Merge branch 'bug/JAL-2591overviewupdate' into develop	commit \| commitdiff \| tree
2017-08-02	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-08-02	Jim Procter	Merge branch 'develop' into documentation/JAL-2418_release2102	commit \| commitdiff \| tree
2017-08-02	Jim Procter	Merge branch 'bug/JAL-2321_merged' into develop	commit \| commitdiff \| tree
2017-08-02	Jim Procter	Merge branch 'bug/JAL-2321' into bug/JAL-2321_merged	commit \| commitdiff \| tree
2017-08-02	Jim Procter	JAL-2418 release notes for JAL-2582	commit \| commitdiff \| tree
2017-08-01	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-08-01	Jim Procter	JAL-2418 known defect for eggnog tree import (JAL-2590)	commit \| commitdiff \| tree
2017-08-01	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-08-01	Jim Procter	Merge branch 'develop' into documentation/JAL-2418_release2102	commit \| commitdiff \| tree
2017-08-01	Jim Procter	Merge branch 'bug/JAL-2632' into develop	commit \| commitdiff \| tree
2017-08-01	Jim Procter	JAL-2418 documentation	commit \| commitdiff \| tree
2017-08-01	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-08-01	Jim Procter	JAL-2631 JAL-2623 JAL-2624 JAL-2630 JAL-147 JAL-2034...	commit \| commitdiff \| tree
2017-08-01	Jim Procter	JAL-2418 update 2.10.2 release date	commit \| commitdiff \| tree
2017-07-24	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-07-18	Jim Procter	JAL-2432 updated documentation for select/hide by annotation...	commit \| commitdiff \| tree
2017-06-30	Jim Procter	Merge branch 'bugs/JAL-2606_broken_jabaws22_IADependency...	commit \| commitdiff \| tree
2017-06-30	Jim Procter	JAL-2606 updated IA build for changed dependency due...	commit \| commitdiff \| tree
2017-06-11	Jim Procter	JAL-2418 updated release branch/version and release...	commit \| commitdiff \| tree
2017-06-05	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-06-05	Jim Procter	JAL-2590 release notes	commit \| commitdiff \| tree
2017-06-05	Jim Procter	Merge branch 'bug/JAL-2590' into develop	commit \| commitdiff \| tree
2017-06-05	Jim Procter	JAL-2590 patch for rendering eggnog trees with polytomies...	commit \| commitdiff \| tree
2017-06-05	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-06-05	Jim Procter	JAL-2576 release notes	commit \| commitdiff \| tree
2017-06-05	Jim Procter	Merge branch 'bug/JAL-2576' into develop	commit \| commitdiff \| tree
2017-06-05	Jim Procter	Merge branch 'bug/JAL-2586' into develop	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2228 java 1.7 compliance	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2291 updated docs	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2291 only hide/show columns intersecting with currently...	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2291 get bitset representing hidden columns	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2291 use HiddenColumns.hideMarkedBits and take...	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2291 method taking a BitSet for hiding columns	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2291 bug fix - BitSet.set is [start,end+1)	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2291 fixed broken asserts for SequenceI.getInsertionsAsBits	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2291 ‘Hide Insertions’ now operates on selection...	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2291 SequenceI.getInsertionsAsBits for convenient...	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2582 comment about IDs being lost if they resembl...	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2582 recognise ENS…P peptide IDs and make two getParent...	commit \| commitdiff \| tree
2017-06-02	Jim Procter	Merge branch 'bug/JAL-2578' into develop	commit \| commitdiff \| tree
2017-06-02	Jim Procter	Merge branch 'bug/JAL-2577' into develop	commit \| commitdiff \| tree
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