git://source.jalview.org / jalview.git / search
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
JAL-1569 interactive editing of secondary structure char for RNA secondary structure
2014-11-23 Jim ProcterJAL-1569 interactive editing of secondary structure...
commit | commitdiff | tree
2014-11-23 Jim Procteremploy test and secondary structure character for determinin...
commit | commitdiff | tree
2014-11-23 Jim ProcterJAL-1569 formatting
 commit | commitdiff | tree
2014-11-23 Jim ProcterJAL-1593 allow per-sequence shading of RNA helix (stored...
commit | commitdiff | tree
2014-11-23 Jim ProcterJAL-1569 test for open/close RNA parenthesis character
 commit | commitdiff | tree
2014-11-23 Jim ProcterJAL-1569 formatting
 commit | commitdiff | tree
2014-11-23 Jim ProcterJAL-1569 refactoring of stockholm test
 commit | commitdiff | tree
2014-11-23 Jim ProcterJAL-1569 consistent handling of sequence and alignment...
commit | commitdiff | tree
2014-11-23 Jim ProcterJAL-1569 revise tests to count number and type of annotation...
commit | commitdiff | tree
2014-11-23 Jim ProcterJAL-1569 formatting
 commit | commitdiff | tree
2014-11-23 Jim ProcterJAL-1569 preserve input ordering for stockholm files...
commit | commitdiff | tree
2014-11-23 Jim ProcterJAL-1569 remove stdout on parsing RNA
 commit | commitdiff | tree
2014-11-23 Jim ProcterJAL-1152 avoid NPE on null alignment annotation vector
 commit | commitdiff | tree
2014-11-21 Jim ProcterJAL-674 add RNA sequence associated annotation to alignment...
commit | commitdiff | tree
2014-11-21 Jim ProcterJAL-1569 formatting
 commit | commitdiff | tree
2014-11-21 Jim ProcterJAL-1140 sensible name for seuqences in RNAML files...
commit | commitdiff | tree
2014-11-21 Jim ProcterJAL-1489 change initial value to distinguish non-rna...
commit | commitdiff | tree
2014-11-21 Jim ProcterJAL-1592 JAL-1489 avoid invalid RNA structure and distinguis...
commit | commitdiff | tree
2014-11-20 Jim ProcterJAL-1569 rna pair code in secondary structure character...
commit | commitdiff | tree
2014-11-20 Jim ProcterJAL-674 JAL-1569 mark RNA helix number in the value...
commit | commitdiff | tree
2014-11-20 Jim ProcterJAL-1569 remove log output during RNA secondary structure...
commit | commitdiff | tree
2014-11-17 Jim ProcterJAL-1469 help documentation
 commit | commitdiff | tree
2014-11-17 Jim ProcterJAL-1469 help documentation
 commit | commitdiff | tree
2014-11-17 Jim ProcterMerge branch 'mrg_dev_282' into Release_2_8_2_Branch
 commit | commitdiff | tree
2014-11-17 Jim ProcterMerge branch 'Release_2_8_2_Branch' into mrg_dev_282
 commit | commitdiff | tree
2014-11-17 Charles Ofoegbucomand line support for svg generation
 commit | commitdiff | tree
2014-11-17 Jim ProcterMerge branch 'mrg_dev_282' into Release_2_8_2_Branch
 commit | commitdiff | tree
2014-11-17 gmungocJAL-1528 Chimera Help doc + fixes to setting colours
 commit | commitdiff | tree
2014-11-17 gmungocJAL-1528 new Preference CHIMERA_PATH (Preferences ...
commit | commitdiff | tree
2014-11-17 gmungocJAL-1528 Chimera tidy errors, focus after align, close...
commit | commitdiff | tree
2014-11-17 gmungocJAL-1528 bug fixes and adjustments to Chimera interface
 commit | commitdiff | tree
2014-11-17 Jim ProcterMerge commit '1d9e1c80fb6c0e32313a976ae0065fd32639f2bc...
commit | commitdiff | tree
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure...
commit | commitdiff | tree
2014-11-13 Jim ProcterJAL-1469 added jfreesvg to desktop dependencies
 commit | commitdiff | tree
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into...
commit | commitdiff | tree
2014-11-12 Jim ProcterJAL-974 fix class contamination for jalviewLite build
 commit | commitdiff | tree
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into...
commit | commitdiff | tree
2014-11-12 Jim Procterjavadoc
 commit | commitdiff | tree
2014-11-12 Jim ProcterJAL-674 use the getMapping/transfer to transfer annotation...
commit | commitdiff | tree
2014-11-12 Jim ProcterJAL-674 patch broken getMapping function
 commit | commitdiff | tree
2014-11-12 Jim ProcterJAL-674 switch from .transfer to .liftOver for transfer...
commit | commitdiff | tree
2014-11-12 Jim ProcterJAL-674 note about broken .transfer method (expect...
commit | commitdiff | tree
2014-11-12 Jim ProcterJAL-674 javadoc
 commit | commitdiff | tree
2014-11-12 Jim ProcterJAL-674 new tests and deprecated tests for PDB mapping...
commit | commitdiff | tree
2014-11-06 Jim ProcterMerge branch 'features/JAL-1152annotationSorting' into...
commit | commitdiff | tree
2014-11-04 Jim ProcterJAL-1213 normalise sequence extracted from Jmol in...
commit | commitdiff | tree
2014-11-04 Jim ProcterJAL-1213 test to ensure JMol extracted sequences are...
commit | commitdiff | tree
2014-11-03 Jim ProcterMerge branch 'develop' into features/JAL-1152annotationSorting
 commit | commitdiff | tree
2014-11-03 Jim ProcterMerge branch 'bug/JAL-1250_redundance-removal' into...
commit | commitdiff | tree
2014-11-03 Jim ProcterMerge branch 'develop' into features/JAL-1152annotationSorting
 commit | commitdiff | tree
2014-11-03 Jim ProcterMerge branch 'features/ssFromPDBEntry' into develop
 commit | commitdiff | tree
2014-11-03 Jim ProcterJAL-795 JAL-674 tweaked logic to avoid black annotation...
commit | commitdiff | tree
2014-11-03 Jim Procterfix for JAL-1579 create threshold object for annotation...
commit | commitdiff | tree
2014-11-03 Jim ProcterJAL-1578 test property accessors/copy constructor
 commit | commitdiff | tree
2014-11-03 Jim ProcterJAL-1578 JAL-674 store/restore alignment annotation...
commit | commitdiff | tree
2014-11-03 Jim ProcterJAL-1578 formatting and imports
 commit | commitdiff | tree
2014-11-03 Jim ProcterJAL-674 peptide structure input so test is not dependent...
commit | commitdiff | tree
2014-11-03 Jim ProcterJAL-1551 formatting
 commit | commitdiff | tree
2014-11-03 Jim ProcterJAL-674 JAL-961 JAL-1578 accessors and copy constructor...
commit | commitdiff | tree
2014-11-03 Jim Procterjavadoc
 commit | commitdiff | tree
2014-10-31 Jim ProcterJAL-674 JAL-961 pass row reference to handler to check...
commit | commitdiff | tree
2014-10-31 Jim ProcterJAL-674 JAL-961 properties to stash additional information...
commit | commitdiff | tree
2014-10-30 Jim ProcterMerge branch 'develop' into features/ssFromPDBEntry
 commit | commitdiff | tree
2014-10-30 Jim ProcterJAL-674 hang on to sequences created by secondary parsiing...
commit | commitdiff | tree
2014-10-30 Jim ProcterJAL-674 count number of annotation transferred in test
 commit | commitdiff | tree
2014-10-30 Jim ProcterJAL-674 propagate annotation onto mapped sequence and...
commit | commitdiff | tree
2014-10-30 Jim ProcterJAL-674 register PDB IDs when ever they are resolved...
commit | commitdiff | tree
2014-10-30 Jim ProcterJAL-674 use PDB ID<>File registry to look up correct...
commit | commitdiff | tree
2014-10-30 Jim ProcterJAL-674 return original and replacement sequences and...
commit | commitdiff | tree
2014-10-30 Jim ProcterJAL-674 helpful javadoc for remap method
 commit | commitdiff | tree
2014-10-30 Jim ProcterJAL-674 flag and proxy method to distinguish setMapping...
commit | commitdiff | tree
2014-10-30 Jim ProcterJAL-674 map on StructureSelectionManager to record...
commit | commitdiff | tree
2014-10-30 Jim Procterpatch for JAL-795 - use base secondary structure colour...
commit | commitdiff | tree
2014-10-30 Jim ProcterJAL-674 patch test to verify presence of annotation...
commit | commitdiff | tree
2014-10-30 Jim ProcterJAL-1551 format and tidy
 commit | commitdiff | tree
2014-10-29 Jim ProcterJAL-1264 JAL-674 test to exercise the AlignmentAnnotation...
commit | commitdiff | tree
2014-10-29 Jim ProcterJAL-1264 JAL-674 method to copy annotation on structure...
commit | commitdiff | tree
2014-10-29 Jim ProcterJAL-674 JAL-1264 remap method to allow annotation positions...
commit | commitdiff | tree
2014-10-27 Jim ProcterMerge branch 'develop' into Release_2_8_2_Branch
 commit | commitdiff | tree
2014-10-27 Jim ProcterMerge branch 'Release_2_8_2_Branch' into merge_r282_dev
 commit | commitdiff | tree
2014-06-23 Jim ProcterMerge branch 'JAL-1526' into Release_2_8_2_Branch
 commit | commitdiff | tree
2014-06-23 Jim ProcterJAL-1526 simple function to write a snapshot of the...
commit | commitdiff | tree
2014-06-12 Jim ProcterMerge branch 'hotfix/JAL-1524' into develop
 commit | commitdiff | tree
2014-06-12 Jim ProcterMerge branch 'hotfix/JAL-1524' into Release_2_8_2_Branch
 commit | commitdiff | tree
2014-06-12 Jim ProcterMerge branch 'hotfix/JAL-1524' into Release_2_8_1_Branch
 commit | commitdiff | tree
2014-06-12 Jim ProcterJAL-1524 fix
 commit | commitdiff | tree
2014-06-12 Jim ProcterMerge branch 'feature/JAL-1379' into develop
 commit | commitdiff | tree
2014-06-10 Jim ProcterMerge branch 'feature/JAL-1379' into Release_2_8_2_Branch
 commit | commitdiff | tree
2014-06-10 Jim ProcterJAL-1379 a JPred v3.0.1 client via JABA 2.1
 commit | commitdiff | tree
2014-06-10 Jim ProcterJAL-1379 allow services with an MSA interface to create...
commit | commitdiff | tree
2014-06-10 Jim Proctertidy source
 commit | commitdiff | tree
2014-06-10 Jim ProcterJAL-1379 allow JABA2 tests to run on local or default...
commit | commitdiff | tree
2014-06-10 Jim ProcterJAL-1379 refactor Jws2 service client so dynamic services...
commit | commitdiff | tree
2014-06-06 Jim ProcterMerge branch 'Release_2_8_2_Branch' into develop
 commit | commitdiff | tree
2014-06-06 Jim ProcterJAL-1520 fix unicode translation errors.
 commit | commitdiff | tree
2014-06-06 Jim ProcterMerge branch 'Release_2_8_2_Branch' into develop
 commit | commitdiff | tree
2014-06-06 Jim ProcterJAL-1520 fix unicode translation errors.
 commit | commitdiff | tree
2014-06-06 Jim ProcterMerge branch 'Release_2_8_2_Branch' into develop
 commit | commitdiff | tree
2014-06-06 Jim ProcterJAL-1519 make the splash screen larger/more readable
 commit | commitdiff | tree
2014-06-06 Jim ProcterJAL-1519 - tidy build properties management code
 commit | commitdiff | tree
next