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JAL-4199 remove viewport references from AlignmentTask
2023-07-12 Mateusz WarownyJAL-4199 remove viewport references from AlignmentTask
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2023-07-12 Mateusz WarownyJAL-4199 Fix interactive jobs not being stopped
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2023-07-12 Mateusz WarownyJAL-4199 Organise AlignCalcWorkerAdapter imports
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2023-07-12 Mateusz WarownyJAL-4199 Implement toString in BaseTask
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2023-07-12 Mateusz WarownyJAL-4199 Organise annotation task imports and fields
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2023-07-12 Mateusz WarownyJAL-4199 Set initial delay of task executor to 0
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2023-07-12 Mateusz WarownyJAL-4199 Remove commented out code
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2023-07-12 Mateusz WarownyJAL-4199 Perform null check for annotation sequenceRef
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2023-07-12 Mateusz WarownyJAL-4199 Patch task execution in action tests
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2023-07-12 Mateusz WarownyJAL-4199 Remove utility methods moved to other classes...
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2023-07-12 Mateusz WarownyImplement getRootDatasetSequence for SequenceI
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2023-07-12 Mateusz WarownyImplement getLastGraphGroup in for AnnotatedCollectionI
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2023-07-12 Mateusz WarownyJAL-4199 Schedule tasks for execution from MenuManager
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2023-07-12 Mateusz WarownyJAL-4199 Tidy up imports
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2023-07-12 Mateusz WarownyJAL-4199 Update gui handler for annotation tasks
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2023-07-12 Mateusz WarownyJAL-4199 Implement AlignCalcWorker adapter for annot...
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2023-07-12 Mateusz WarownyJAL-4199 Fix method name typo
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2023-07-12 Mateusz WarownyJAL-4199 Make all TaskEventListener methods default
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2023-07-12 Mateusz WarownyJAL-4199 Remove taskRestarted from task events
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2023-07-12 Mateusz WarownyJAL-4199 Allow multiple listeners in TaskEventSupport
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2023-07-12 Mateusz WarownyJAL-4199 Change actions to be task factories
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2023-07-12 Mateusz WarownyJAL-4199 Replace AbstractPollingTask with BaseTask
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2023-06-22 Mateusz WarownyJAL-4199 Introduce AlignmentAction tests
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2023-06-22 Mateusz WarownyJAL-4199 Initialize jobs and tasks with status CREATED
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2023-06-19 Mateusz WarownyJAL-4199 Test basic service parameter construction
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2023-06-14 Mateusz WarownyJAL-4199 Test URL settings and basic service discovery
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2023-06-14 Mateusz WarownyJAL-4199 Update slivka client
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2023-04-24 Mateusz WarownyJAL-4155 Replace unsafe casting to AlignmentPanel with...
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2023-04-24 James ProcterJAL-4155 Viewport holds a reference to its AlignmentViewPane...
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2023-03-28 Mateusz WarownyJAL-4154 Remove not-bamboo flag from testGetVisibleWidth
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2023-03-28 Mateusz WarownyJAL-4154 Update AlignmentPanelTest to use new forArch...
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2023-03-28 Mateusz WarownyJAL-4154 Add Platform.forArch method.
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2023-03-28 Mateusz WarownyMerge branch 'JAL-4152-typed-singleton-provider' into...
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2023-03-28 Mateusz WarownyMerge branch 'development/Release_2_12_Branch' into...
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2023-03-24 Mateusz WarownyJAL-4152 Remove redundant casts from getInstance usages.
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2023-03-22 Mateusz WarownyJAL-4152 Make return type of getInstance a generic...
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2023-03-17 Mateusz WarownyJAL-4146 Fix SeqCanvasTest setup
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2023-03-15 Mateusz WarownyJAL-4146 Change occurrences of <br/> to <br>
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2023-03-14 Mateusz WarownyJAL-4146 Patch parseColourString test to expect null...
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2023-03-01 Mateusz WarownyJAL-4136 Replace uses of isBlank with isEmpty
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2023-02-24 Mateusz WarownyJAL-4135 replace stream.toString(Charset) calls with...
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2023-02-22 Mateusz WarownyJAL-4130 Replace Collection#forEach call with for loop
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2023-02-22 Mateusz WarownyJAL-4130 Avoid using thenComparing of the Comparator...
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2023-02-17 Mateusz WarownyJAL-4131 Replace usages of requireNonNullElse
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2023-02-16 Mateusz WarownyJAL-4130 Workaround the j2s issue with final variables...
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2023-02-06 Mateusz WarownyJAL-3878 Change Cache.log calls to Console
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2023-02-06 Mateusz WarownyMerge branch 'JAL-3878_ws-overhaul-3' into mmw/Release_2_12_...
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2022-12-12 Mateusz WarownyWIP
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2022-04-26 Mateusz WarownyJAL-3878 Implement RNA Sec. Str. Pred. discovery for...
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2022-04-25 Mateusz WarownyJAL-3878 log full worker repr in AlignCalcManager
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2022-04-25 Mateusz WarownyJAL-3878 Fix edit settings dialog prompting to discard...
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2022-04-11 Mateusz WarownyJAL-3878 Use slivka client's URL when building web...
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2022-04-11 Mateusz WarownyJAL-3878 Add conservation service discovery
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2022-04-11 Mateusz WarownyJAL-3878 Build interactive services menu
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2022-04-11 Mateusz WarownyJAL-3878 Implement prot. seq. an. discovery for slivka.
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2022-04-11 Mateusz WarownyJAL-3878 Implement gui elements for annotation servicces
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2022-04-11 Mateusz WarownyJAL-3878 Create SlivkaAnnotationWSClient
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2022-04-11 Mateusz WarownyJAL-3878 Add full name getter to ActionI
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2022-04-11 Mateusz WarownyJAL-3878 Log status changes in annotation task
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2022-04-11 Mateusz WarownyJAL-3878 Allow null value for action name
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2022-04-07 Mateusz WarownyJAL-3878 Add action and task for annotation services
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2022-04-05 Mateusz WarownyJAL-3878 Introduce IProgressIndicator#addProgressBar
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2022-04-05 Mateusz WarownyJAL-3878 Fix method name to fireTaskRestarted
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2022-04-05 Mateusz WarownyJAL-3878 Add char[] constructor to Sequence
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2022-04-05 Mateusz WarownyJAL-3878 Make BaseJob setters public so they can be...
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2022-04-05 Mateusz WarownyJAL-3878 Add fullName to BaseAction class which combines...
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2022-04-05 Mateusz WarownyJAL-3878 Move status precedence list to JobStatus class
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2022-04-05 Mateusz WarownyJAL-3878 Add uid to WS Tasks
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2022-03-28 Mateusz WarownyJAL-3878 Patch preferences window to use new discoverer.
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2022-03-28 Mateusz WarownyJAL-3878 Fix discoverer being stuck on BEGIN state...
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2022-03-25 Mateusz WarownyJAL-3878 Add slivka discoverer and menu to AlignFrame
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2022-03-25 Mateusz WarownyJAL-3878 Change align frame added to desktop to correct one
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2022-03-25 Mateusz WarownyJAL-3878 Wrap infoPanel updates with SwingUtilities...
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2022-03-25 Mateusz WarownyJAL-3878 Fix re-alignment-capable services detection.
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2022-03-25 Mateusz WarownyJAL-3878 Clear services list on reload.
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2022-03-25 Mateusz WarownyJAL-3878 Fix task status precedence calculation
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2022-03-25 Mateusz WarownyJAL-3878 Fix NullPointerExceptions caused by nulls...
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2022-03-25 Mateusz WarownyJAL3878 Implement slivka service discoverer
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2022-03-25 Mateusz WarownyJAL-3878 Move action name initialization to its own...
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2022-03-25 Mateusz WarownyJAL-3878 Create ws2 client for slivka services
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2022-03-25 Mateusz WarownyJAL-3878 Add builders to each service parameter class
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2022-03-24 Mateusz WarownyJAL-3878 Create service agnostic param datastore and set
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2022-03-23 Mateusz WarownyJAL-3878 Create beans for un/marshalling service parameters
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2022-03-18 Mateusz WarownyJAL-3878 Create abstract ws discoverer providing common...
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2022-03-15 Mateusz WarownyJAL-3878 Connect alignment services with gui
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2022-03-14 Mateusz WarownyJAL-3878 Move array index search to ArrayUtils
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2022-03-11 Mateusz WarownyJAL-3878 Create web service menu manager.
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2022-03-11 Mateusz WarownyJAL-3878 Add hasPresets and hasParameters utility methods...
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2022-03-09 Mateusz WarownyJAL-3878 Add WebServiceProviderI - a view of services.
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2022-03-09 Mateusz WarownyJAL-3878 Improve performance of gap sequence construction.
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2022-03-08 Mateusz WarownyJAL-3878 Add web service reference to actions.
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2022-03-04 Mateusz WarownyJAL-3878 Change visibility of WebService methods to...
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2022-03-03 Mateusz WarownyJAL-3878 Create alignment service "backend" classes
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2022-03-03 Mateusz WarownyJAL-3878 Remove unused JobStatus methods
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2022-03-03 Mateusz WarownyJAL-3878 Create abstract base classes for non-interactive...
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2022-03-02 Mateusz WarownyJAL-3878 Fix typo in method name (getAlignemnt)
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2022-03-02 Mateusz WarownyJAL-3878 Add serviceExecutor to AlignmentViewport.
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2022-02-28 Mateusz WarownyJAL-3878 Separate server job handle from task's sub...
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2022-02-18 Mateusz WarownyJAL-3878 Provide javadoc for WebServiceClientI interface
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2022-02-18 Mateusz WarownyJAL-3878 Create skeleton for alignment service action
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