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2019-06-26	Ben Soares	JAL-3130 Added all groovy jars for groovy console	commit \| commitdiff \| tree
2019-06-19	Ben Soares	Merge branch 'merge/JAL-3310_and_JAL-3300' into develop	commit \| commitdiff \| tree
2019-06-19	Ben Soares	JAL-3321 Last pieces of the getdown-launcher.jar upgrade...	commit \| commitdiff \| tree
2019-06-19	Ben Soares	JAL-3310 Removing i4jruntime.jar from dist. Not needed...	commit \| commitdiff \| tree
2019-06-19	Ben Soares	JAL-3321 Corrected the badly configured getdown-launcher...	commit \| commitdiff \| tree
2019-06-18	Ben Soares	Merge branch 'develop' into merge/JAL-3310_and_JAL...	commit \| commitdiff \| tree
2019-06-18	Ben Soares	JAL-3310 tidying unecessary files from getdown src...	commit \| commitdiff \| tree
2019-06-18	Ben Soares	JAL-3312 Fixed SHIFT-CMD/SHIFT-CTRL Key combinations...	commit \| commitdiff \| tree
2019-06-18	Ben Soares	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2019-06-18	Ben Soares	Merge branch 'develop' into merge/JAL-3310_and_JAL...	commit \| commitdiff \| tree
2019-06-17	Ben Soares	JAL-3310 JAL-3300 two getdown fixes merged	commit \| commitdiff \| tree
2019-06-17	Ben Soares	JAL-3310 Remove install4j from getdown-launcher.jar...	commit \| commitdiff \| tree
2019-06-14	Ben Soares	JAL-3295 pre-merged code with JAL-3295 branch which...	commit \| commitdiff \| tree
2019-06-14	Ben Soares	JAL-3278 A system.out.println turned into a cache.log...	commit \| commitdiff \| tree
2019-06-14	Ben Soares	JAL-3300 instant Splash screen on getdown	commit \| commitdiff \| tree
2019-06-14	Ben Soares	JAL-3130 added a bit of gradle support for compiling...	commit \| commitdiff \| tree
2019-06-13	Ben Soares	JAL-3295 Can now compile/run/debug in Eclipse with...	commit \| commitdiff \| tree
2019-06-12	Ben Soares	JAL-3295 Fixed CMD-select of sequences in alignment...	commit \| commitdiff \| tree
2019-06-12	Ben Soares	JAL-3299 Fixed gitHash and gitBranch definitions in...	commit \| commitdiff \| tree
2019-06-11	Ben Soares	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2019-06-11	Ben Soares	JAL-3248 improved pandoc lookup. Now comma-separated...	commit \| commitdiff \| tree
2019-06-10	Ben Soares	JAL-3248 quick fix for build.gradle when pandoc not...	commit \| commitdiff \| tree
2019-06-10	Ben Soares	JAL-3248 building.html now generated by pandoc 'brew...	commit \| commitdiff \| tree
2019-06-10	Ben Soares	JAL-3248 added conversion of building.md to building...	commit \| commitdiff \| tree
2019-06-10	Ben Soares	Merge branch 'develop' into task/JAL-3248_rewritten_building...	commit \| commitdiff \| tree
2019-06-10	Ben Soares	Merge branch 'task/JAL-3248_rewritten_building_md_instructio...	commit \| commitdiff \| tree
2019-06-10	Ben Soares	JAL-3248 Building from source documentation in markdown...	commit \| commitdiff \| tree
2019-06-10	Ben Soares	JAL-3248 Building from source documentation in markdown...	commit \| commitdiff \| tree
2019-06-07	Ben Soares	JAL-3248 Almost completed building doc	commit \| commitdiff \| tree
2019-06-07	Ben Soares	JAL-3248 a bit more	commit \| commitdiff \| tree
2019-06-07	Ben Soares	Merge branch 'develop' into task/JAL-3248_rewritten_building...	commit \| commitdiff \| tree
2019-06-07	Ben Soares	JAL-3225 removing slightly misleading rewrite of .classpath...	commit \| commitdiff \| tree
2019-06-06	Ben Soares	JAL-3225 Classpath now made in eclipse.classpath.file...	commit \| commitdiff \| tree
2019-06-04	Ben Soares	JAL-3287 correct local file URI for appbase and getdownDiges...	commit \| commitdiff \| tree
2019-06-04	Ben Soares	JAL-3287 adjustment to HelpLinksChecker	commit \| commitdiff \| tree
2019-06-04	Ben Soares	JAL-3287 adjustment to HelpLinksChecker to run in Windows...	commit \| commitdiff \| tree
2019-06-04	Ben Soares	JAL-3248 small edits	commit \| commitdiff \| tree
2019-05-31	Ben Soares	JAL-3247 Adjusted Uninstall Old Jalview.app to just...	commit \| commitdiff \| tree
2019-05-31	Ben Soares	JAL-3248 extra tl;dr	commit \| commitdiff \| tree
2019-05-30	Ben Soares	JAL-3248 Essential tl;dr :)	commit \| commitdiff \| tree
2019-05-30	Ben Soares	Merge branch 'develop' into task/JAL-3248_rewritten_building...	commit \| commitdiff \| tree
2019-05-28	Ben Soares	JAL-3277 Fixed getdown splashscreen. For unknown reasons...	commit \| commitdiff \| tree
2019-05-28	Ben Soares	JAL-1988 Some TEST code accidentally left in now removed...	commit \| commitdiff \| tree
2019-05-28	Ben Soares	JAL-3141 deleted TODO comment in Messages_es	commit \| commitdiff \| tree
2019-05-28	Ben Soares	Merge branch 'develop' into task/JAL-3141_JAL-3247_merge	commit \| commitdiff \| tree
2019-05-28	Ben Soares	JAL-3248 saving	commit \| commitdiff \| tree
2019-05-27	Ben Soares	JAL-3141 Added HashMap types for Java 1.8 compatibility	commit \| commitdiff \| tree
2019-05-27	Ben Soares	Merge branch 'task/JAL-3141_Customise_checkbox' into...	commit \| commitdiff \| tree
2019-05-27	Ben Soares	JAL-3141 Object array cast missing	commit \| commitdiff \| tree
2019-05-27	Ben Soares	Merge branch 'task/JAL-3247_JAL-3246_JAL-3254_JAL-3236_merge...	commit \| commitdiff \| tree
2019-05-27	Ben Soares	Merge branch 'develop' into task/JAL-3247_JAL-3246_JAL...	commit \| commitdiff \| tree
2019-05-27	Ben Soares	JAL-3247 Added AppleScript based App to run old Jalview...	commit \| commitdiff \| tree
2019-05-27	Ben Soares	JAL-3141 Generified the JvUtils.buildComboWithTooltips...	commit \| commitdiff \| tree
2019-05-25	Ben Soares	JAL-3141 One more error log fix	commit \| commitdiff \| tree
2019-05-25	Ben Soares	JAL-3141 Added tooltips on Schemes dropdown and Customise...	commit \| commitdiff \| tree
2019-05-24	Ben Soares	JAL-3141 Fixes recommended from gmc's test	commit \| commitdiff \| tree
2019-05-24	Ben Soares	JAL-3141 Fixed vertical size of the example filenames...	commit \| commitdiff \| tree
2019-05-24	Ben Soares	JAL-3141 Fixed tests	commit \| commitdiff \| tree
2019-05-24	Ben Soares	JAL-3141 Reworked a lot of BackupFiles to allow the...	commit \| commitdiff \| tree
2019-05-22	Ben Soares	Merge branch 'bug/JAL-3141_backupfiles_prefs_widget_disable_...	commit \| commitdiff \| tree
2019-05-21	Ben Soares	JAL-3247 Launcher start improvements. RPM and DEB no...	commit \| commitdiff \| tree
2019-05-20	Ben Soares	Merge branch 'task/JAL-3254_improved_max_memory_stack_settin...	commit \| commitdiff \| tree
2019-05-20	Ben Soares	JAL-3247 Unix shell installer and tar archive corrected...	commit \| commitdiff \| tree
2019-05-20	Ben Soares	JAL-3254 Improved memory setting (allows mem for OS...	commit \| commitdiff \| tree
2019-05-13	Ben Soares	Merge branch 'task/JAL-3236_install4j_linux_unix_userland_in...	commit \| commitdiff \| tree
2019-05-13	Ben Soares	JAL-3247 nogradle option on this mac build/install...	commit \| commitdiff \| tree
2019-05-13	Ben Soares	JAL-3247 JAL-3254 JAL-3260 Fixed: JVL file jalview...	commit \| commitdiff \| tree
2019-05-10	Ben Soares	JAL-3246 JAL-3247 Reworked JVL files as getdown.txt...	commit \| commitdiff \| tree
2019-05-09	Ben Soares	JAL-3236 Added unixInstaller to install4jMediaTypes...	commit \| commitdiff \| tree
2019-05-09	Ben Soares	JAL-3247 JAL-3254 Ensure .jvp and .jvl appear first...	commit \| commitdiff \| tree
2019-05-09	Ben Soares	JAL-3247 JAL-3254 Fixed file association launch behaviour...	commit \| commitdiff \| tree
2019-05-08	Ben Soares	JAL-3246 add -Pgetdown_local=true to use local files	commit \| commitdiff \| tree
2019-05-08	Ben Soares	JAL-3247 JAL-3254 changing default location of jalview...	commit \| commitdiff \| tree
2019-05-08	Ben Soares	JAL-3247 JAL-3254 Getdown now opening any files thrown...	commit \| commitdiff \| tree
2019-05-08	Ben Soares	JAL-3247 JAL-3254 Automatically creating correct file...	commit \| commitdiff \| tree
2019-05-08	Ben Soares	JAL-3247 JAL-3254 Automatically creating correct file...	commit \| commitdiff \| tree
2019-05-08	Ben Soares	JAL-3247 Script to produce auto file association files...	commit \| commitdiff \| tree
2019-05-08	Ben Soares	JAL-3247 Note in launcher.log when using a JVL file	commit \| commitdiff \| tree
2019-05-07	Ben Soares	JAL-3247 Changed JVL file to be a props file, with...	commit \| commitdiff \| tree
2019-05-07	Ben Soares	JAL-3247 Script to automatically install Jalview from...	commit \| commitdiff \| tree
2019-05-07	Ben Soares	JAL-3247 Auto generated file associations from jalview...	commit \| commitdiff \| tree
2019-05-06	Ben Soares	JAL-3247 Allowing 'file' protocol URL with empty domain...	commit \| commitdiff \| tree
2019-05-06	Ben Soares	JAL-3247 Code changes to getdown. Double click open...	commit \| commitdiff \| tree
2019-05-06	Ben Soares	JAL-3247 improvements	commit \| commitdiff \| tree
2019-05-06	Ben Soares	JAL-3247 Some getdown image file changes/tidying	commit \| commitdiff \| tree
2019-05-03	Ben Soares	JAL-3247 First attempt at getdown code to add macOS...	commit \| commitdiff \| tree
2019-05-03	Ben Soares	JAL-3247 Part way towards adding double-click opening...	commit \| commitdiff \| tree
2019-05-02	Ben Soares	JAL-3247 Improved file associations on macOS and Windows	commit \| commitdiff \| tree
2019-05-02	Ben Soares	adding another getdown file (produced during a getdown...	commit \| commitdiff \| tree
2019-05-02	Ben Soares	JAL-3248 some progress on prerequesite installation...	commit \| commitdiff \| tree
2019-05-02	Ben Soares	JAL-3247 jvp jvl File associations, JRE variablised...	commit \| commitdiff \| tree
2019-05-01	Ben Soares	Fixed -Djvl=true in install4j JVM invocation	commit \| commitdiff \| tree
2019-05-01	Ben Soares	Extra JVL file association in the installer. Shadowed...	commit \| commitdiff \| tree
2019-05-01	Ben Soares	Merge branch 'task/JAL-3243_PDB_free_text_error' into...	commit \| commitdiff \| tree
2019-04-30	Ben Soares	JAL-3243 Replaced javax.ws jar compatible with jersey...	commit \| commitdiff \| tree
2019-04-30	Ben Soares	JAL-3196 Correcting the source for getdown (already...	commit \| commitdiff \| tree
2019-04-26	Ben Soares	Added a unixInstaller and unixArchive media-type to...	commit \| commitdiff \| tree
2019-04-26	Ben Soares	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2019-04-26	Ben Soares	Removing old commented out 'org.gradle.java.home='...	commit \| commitdiff \| tree
2019-04-26	Ben Soares	Also removing eclipse .project and .settings from the...	commit \| commitdiff \| tree
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