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JAL-2759 Tidy
2018-01-29 kiramtJAL-2759 Tidy
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2018-01-29 kiramtJAL-2759 make a new cursor instead of resetting, updated...
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2018-01-29 kiramtJAL-2759 Fix unintended type change
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2018-01-22 kiramtJAL-2579 Moved locateVisibleStartOfSequence to Sequence...
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2018-01-22 kiramtJAL-2759 Various minor HiddenColumns updates after...
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2018-01-19 kiramtJAL-2759 Changes to getVisibleSequenceStrings after...
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2018-01-19 kiramtJAL-2759 Moved propagateInsertions out of HiddenColumns
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2018-01-19 kiramtJAL-2759 Update to getVisibleStartAndEndIndex after...
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2018-01-18 kiramtJAL-2759 change subtractVisibleColumns and removal...
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2018-01-18 kiramtJAL-2759 Updated test
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2018-01-18 kiramtJAL-2759 unit tests (incomplete)
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2018-01-16 kiramtJAL-2759 setup hideBitSet over range for hideInsertions
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2018-01-16 kiramtJAL-2759 Unit test for PopupMenu hideInsertions code
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2018-01-16 kiramtJAL-2759 Moved alignment annotation code out of HiddenColumns
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2018-01-16 kiramtJAL-2759 Replaced StringBuffer with StringBuilder;...
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2018-01-15 kiramtJAL-2759 More compact iterator usage; after review
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2018-01-15 kiramtJAL-2759 First pass instantiate hiddenColumns collection...
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2018-01-15 kiramtJAL-2759 getVisContigsIterator returns VisibleContigsIterator
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2018-01-15 kiramtJAL-2759 Rename hideInsertionsFor to hideList, after...
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2018-01-15 kiramtJAL-2759 Refactor of hideInsertionsFor after review
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2018-01-15 kiramtJAL-2759 Simplified HiddenColumns constructor after...
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2018-01-15 kiramtJAL-2759 Changed VisibleColsCollection constructor...
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2018-01-15 kiramtJAL-2759 Minor doc and naming changes
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2018-01-15 kiramtJAL-2759 Updated absoluteToVisibleColumn doc (prev...
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2018-01-15 kiramtJAL-2759 Rename findColumnPosition and adjustForHiddenColumn...
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2018-01-15 kiramtJAL-2759 Renamed BoundedHiddenColsIterator to HiddenColsIterator
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2018-01-15 kiramtJAL-2759 Comments and renaming for has(Many)HiddenColumns...
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2018-01-15 kiramtJAL-2759 Tidy up javadoc and naming in HiddenColumnsCursor...
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2018-01-15 kiramtJAL-2759 Updated HiddenColumnsTest::testIsVisible following...
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2018-01-15 kiramtJAL-2759 Update to getHiddenBoundaryRight + unit test...
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2018-01-15 kiramtJAL-2759 Updates following review
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2017-11-24 kiramtJAL-2759 update benchmark code
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2017-11-22 kiramtJAL-2842 JAL-2759 change to SeqPanel moveCursor
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2017-11-22 kiramtJAL-2759 code tidy
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2017-11-22 kiramtJAL-2759 performance improvements to hideColumns
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2017-11-22 kiramtJAL-2759 performance tweaks
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2017-11-22 kiramtJAL-2759 HiddenColumns test polishing
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2017-11-21 kiramtJAL-2759 corrected old getVisibleBlocksIterator calls...
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2017-11-21 kiramtJAL-2759 Remove getVisibleBlocksIterator call
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2017-11-21 kiramtMerge branch 'develop' into feature/JAL-2759
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2017-11-21 kiramtJAL-2759 BoundedStartRegionIterator test
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2017-11-21 kiramtJAL-2759 unit tests for VisibleContigsIterator
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2017-11-20 kiramtJAL-2759 cursor option for BoundedStartRegionIterator
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2017-11-20 kiramtJAL-2759 reinstate change from develop (JAL-2636) somehow...
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2017-11-20 kiramtJAL-2759 rationalise visible contigs iteration
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2017-11-20 kiramtJAL-2759 improvements to speed up synchronisation;...
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2017-11-17 kiramtJAL-2759 Move isVisible to use cursor
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2017-11-17 kiramtJAL-2759 tidy
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2017-11-17 kiramtJAL-2759 Update tests
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2017-11-17 kiramtJAL-2759 Convert reveal to use cursor
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2017-11-17 kiramtJAL-2759 HiddenColumnsCursor tests
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2017-11-16 kiramtJAL-2831 Removed unwanted hidden sequences checks
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2017-11-15 kiramtJAL-2831 Don't show cursor if position in hidden region
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2017-11-15 kiramtMerge branch 'bug/JAL-2811' into bug/JAL-2831
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2017-11-15 kiramtJAL-2811 Updated following review
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2017-11-15 kiramtJAL-2834 JAL-2836 temporarily disabled wrapped mode...
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2017-11-15 kiramtJAL-2831 ported to applet
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2017-11-14 kiramtJAL-2831 tidies and tests
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2017-11-14 kiramtJAL-2831 tidy
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2017-11-14 kiramtMerge branch 'bug/JAL-2811' into bug/JAL-2831
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2017-11-14 kiramtJAL-2811 Changed to overlay on via graphics context...
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2017-11-14 kiramtJAL-2811 Missed commit
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2017-11-14 kiramtJAL-2811 Made it work for hidden columns/seqs too
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2017-11-14 kiramtJAL-2831 Attempt at cursor fix for wrapped mode
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2017-11-14 kiramtMerge branch 'bug/JAL-2811' into bug/JAL-2831
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2017-11-14 kiramtJAL-2831 deal with hidden cols and seqs in new cursor...
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2017-11-14 kiramtJAL-2831 Added move viewport event and set up cursor...
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2017-11-14 kiramtMerge branch 'imp/JAL-2774' into bug/JAL-2831
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2017-11-13 kiramtJAL-2811 Tidy
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2017-11-13 kiramtJAl-2811 Working for wrapped panels too
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2017-11-13 kiramtJAL-2811 Add layer for cursor in SeqCanvas
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2017-11-13 kiramtJAL-2759 convert findColumnPosition to use cursor
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2017-11-13 kiramtJAL-2759 Converted getHiddenBoundaryLeft/Right to use...
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2017-11-09 kiramtJAL-2759 make bounds correct for left scrolling with...
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2017-11-08 kiramtMerge branch 'develop' into feature/JAL-2759
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2017-11-07 kiramtJAL-2774 Added javadoc for new event parameters
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2017-11-07 kiramtJAL-2774 Fix fastpaint of wrapped alignment
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2017-11-06 kiramtJAL-2759 fix getHiddenOffset iterating backwards
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2017-11-01 kiramtMerge branch 'develop' into imp/JAL-2775
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2017-10-31 kiramtJAL-2774 Fix repaint artefacts
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2017-10-31 kiramtJAL-2774 Fixed merge issues
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2017-10-31 kiramtMerge remote-tracking branch 'origin/develop' into...
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2017-10-31 kiramtJAL-2756 update for new EBI https link
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2017-10-19 kiramtMerge branch 'develop' into bug/JAL-2609attemptedmerge
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2017-10-16 kiramtJAL-2775 added repaint clipping
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2017-10-13 kiramtJAL-2774 Created single event for update to both start...
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2017-10-13 kiramtJAL-2759 hiddenColumns null check
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2017-10-12 kiramtJAL-2759 working first pass cursor
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2017-10-11 kiramtJAL-2742 test updates following review
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2017-10-11 kiramtJAL-2742 minor test updates following review
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2017-10-11 kiramtJAL-2742 removed unused getViewAsCigars
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2017-10-11 kiramtJAL-2609attemptedmerge tidy
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2017-10-10 kiramtMerge remote-tracking branch 'origin/features/JAL-2609fastPa...
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2017-10-10 kiramtJAL-2690attemptedmerge seems to work
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2017-10-10 kiramtJAL-2690attemptedmerge partial merge
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2017-10-10 kiramtJAL-2759 Rearranged iterators
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2017-10-09 kiramtJAL-2674 iterator updates
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2017-10-06 kiramtJAL-2674 Last moves to iterators
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2017-10-06 kiramtJAL-2647 stashing
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2017-10-05 kiramtJAL-2674 Removed a stray Vector
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