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2022-09-02	Ben Soares	JAL-1988 Added a saves in progress check for quit	commit \| commitdiff \| tree
2022-08-31	Ben Soares	JAL-1988 added a saveInProgress stack to BackupFiles	commit \| commitdiff \| tree
2022-08-01	Ben Soares	JAL-4056 fixed tl;dr section of doc/building.md	commit \| commitdiff \| tree
2022-07-24	Ben Soares	JAL-4034 add round corners to 3DB confirmation button...	commit \| commitdiff \| tree
2022-06-17	Ben Soares	JAL-3027 Avoid FlatLAF Desktop class is JalviewJS	commit \| commitdiff \| tree
2022-06-13	Ben Soares	JAL-1988 Moved APQHandlers to jalview.jbgui and called...	commit \| commitdiff \| tree
2022-06-13	Ben Soares	Merge branch 'develop' into improvement/JAL-1988+JAL...	commit \| commitdiff \| tree
2022-06-13	Ben Soares	JAL-3416 remove flat as default for linux	commit \| commitdiff \| tree
2022-06-13	Ben Soares	JAL-1988 JAL-3416 Using the flatlaf-extras About, Preference...	commit \| commitdiff \| tree
2022-06-13	Ben Soares	JAL-3416 Added some mac specific FlatLAF settings....	commit \| commitdiff \| tree
2022-06-13	Ben Soares	JAL-3416 updated FlatLAF libraries to 2.3. Added the...	commit \| commitdiff \| tree
2022-06-07	Ben Soares	JAL-4020 added the \Scripts\pymol.exe. to the pathList	commit \| commitdiff \| tree
2022-06-06	Ben Soares	JAL-4020 Added the +2 arg for PyMOLWin.exe allowing...	commit \| commitdiff \| tree
2022-06-06	Ben Soares	JAL-4020 Added path search for global installation...	commit \| commitdiff \| tree
2022-06-06	Ben Soares	JAL-4020 Added search for PyMOLWinWithConsole.bat ...	commit \| commitdiff \| tree
2022-05-12	Ben Soares	Merge branch 'develop' into issues/JAL-3553+JAL-3978...	commit \| commitdiff \| tree
2022-05-12	Ben Soares	JAL-4014 4 gecos colour schemes added to help documentation	commit \| commitdiff \| tree
2022-05-12	Ben Soares	JAL-4014 4 gecos colour schemes added	commit \| commitdiff \| tree
2022-05-10	Ben Soares	JAL-4004 cosmetic improvements for Java documentation...	commit \| commitdiff \| tree
2022-05-09	Ben Soares	JAL-4004 gradle task releasesTemplates now part of...	commit \| commitdiff \| tree
2022-05-09	Ben Soares	JAL-4004 working templates and generated whatsNew.html...	commit \| commitdiff \| tree
2022-05-09	Ben Soares	JAL-4004 remove stray empty h3 headers	commit \| commitdiff \| tree
2022-05-09	Ben Soares	JAL-4004 gradle releasesTemplates builds releases.html	commit \| commitdiff \| tree
2022-05-09	Ben Soares	JAL-4004 Temporary mechanism to add JalviewJS link...	commit \| commitdiff \| tree
2022-05-09	Ben Soares	JAL-3989 Code tidying, added JVL_HEADER for older versions...	commit \| commitdiff \| tree
2022-05-05	Ben Soares	JAL-4004 Now generating hugo files from help/markdown/...	commit \| commitdiff \| tree
2022-05-04	Ben Soares	JAL-4004 existing releases-VERSION.md files and releases...	commit \| commitdiff \| tree
2022-05-04	Ben Soares	JAL-4004 locations for markdown to go into whatsnew...	commit \| commitdiff \| tree
2022-05-03	Ben Soares	JAL-3989 improved parsing and formatting now using...	commit \| commitdiff \| tree
2022-05-03	Ben Soares	JAL-1544 minor errors in releases.html and one missing...	commit \| commitdiff \| tree
2022-04-29	Ben Soares	JAL-3989 small improvements to output markdown	commit \| commitdiff \| tree
2022-04-28	Ben Soares	JAL-3989 add in issue shortcodes to the archive version...	commit \| commitdiff \| tree
2022-04-25	Ben Soares	JAL-3978 clean up unnecessary local variables for JALVIEW_VE...	commit \| commitdiff \| tree
2022-04-22	Ben Soares	JAL-3989 Changed to using com.google.common.hash for...	commit \| commitdiff \| tree
2021-11-05	Ben Soares	JAL-3746 Updated help docs for 3D-Beacons. Added and...	commit \| commitdiff \| tree
2021-10-28	Ben Soares	JAL-3830 polished setup app for macos	commit \| commitdiff \| tree
2021-07-21	Ben Soares	JAL-3850 using reflection for SimpleHttpFileServerFactory	commit \| commitdiff \| tree
2021-03-11	Ben Soares	JAL-3830 Improved for .app dir name with spaces, e...	commit \| commitdiff \| tree
2021-03-05	Ben Soares	JAL-3618 Enable appBundleIsTraversable in JFileChooser...	commit \| commitdiff \| tree
2021-01-22	Ben Soares	JAL-3805 Smaller DMG Finder windows for all DS_Store...	commit \| commitdiff \| tree
2021-01-22	Ben Soares	JAL-3805 New DS_Store for smaller DMG Finder window	commit \| commitdiff \| tree
2021-01-22	Ben Soares	JAL-3805 Remove Uninstall Old Jalview.app in Release_2_11_1_...	commit \| commitdiff \| tree
2020-12-08	Ben Soares	JAL-3594 DMG fixes	commit \| commitdiff \| tree
2020-06-16	Ben Soares	JAL-3608 non-JS cherry-pick	commit \| commitdiff \| tree
2020-06-16	Ben Soares	JAL-3608 formatting save only	commit \| commitdiff \| tree
2020-06-16	Ben Soares	JAL-3608 formatting save only	commit \| commitdiff \| tree
2020-06-15	Ben Soares	JAL-3628 Changed other calls to renameTo to use BackupFiles...	commit \| commitdiff \| tree
2020-06-08	soares	JAL-3446 new Jmol 15.1.3 jar added to j11lib, old j11lib...	commit \| commitdiff \| tree
2020-06-04	Ben Soares	JAL-3225 Minor change to building.md for flexmark,...	commit \| commitdiff \| tree
2020-06-04	Ben Soares	JAL-3225 Removed dependency on command line pandoc...	commit \| commitdiff \| tree
2020-06-02	soares	JAL-3225 small fixes for building within Eclipse	commit \| commitdiff \| tree
2020-06-02	Ben Soares	JAL-3225 some fixes to build.gradle for working in...	commit \| commitdiff \| tree
2020-05-27	Ben Soares	JAL-3541 ensure deletion of cloverReportDir	commit \| commitdiff \| tree
2020-05-27	Ben Soares	JAL-3541 small fix for clover.xml location expected...	commit \| commitdiff \| tree
2020-05-26	soares	Merge branch 'bug/JAL-3541_cloverReport_gradle_task_fails...	commit \| commitdiff \| tree
2020-05-26	soares	JAL-3541 added a property/variable style comment to...	commit \| commitdiff \| tree
2020-05-25	soares	JAL-3541 selectively merged build.gradle and gradle...	commit \| commitdiff \| tree
2020-05-22	soares	JAL-3609 corrected maxdimension to mindimension. Adjusted...	commit \| commitdiff \| tree
2020-05-20	Ben Soares	JAL-3609 removed debugging prints	commit \| commitdiff \| tree
2020-05-19	Ben Soares	JAL-3609 changed property names to something more palatable...	commit \| commitdiff \| tree
2020-05-19	Ben Soares	JAL-3609 system properties to force a scale, or automaticall...	commit \| commitdiff \| tree
2020-05-19	Ben Soares	JAL-3609 Added a -DforceHiDPISetting=true option mainly...	commit \| commitdiff \| tree
2020-05-15	Ben Soares	JAL-3609 HiDPI scale setting done via system prop in...	commit \| commitdiff \| tree
2020-05-15	Ben Soares	JAL-3541 Fixed report path for build artifacts	commit \| commitdiff \| tree
2020-05-14	Ben Soares	JAL-3541 Added mem setting and jvmArgs for cloverReporting	commit \| commitdiff \| tree
2020-05-14	Ben Soares	JAL-3541 Individual tests now instrumented and reported...	commit \| commitdiff \| tree
2020-05-12	Ben Soares	JAL-3541 Helpers for running tests, and other commands...	commit \| commitdiff \| tree
2020-05-12	Ben Soares	JAL-3541 JavaExec tasks for cloverInstr and cloverReport...	commit \| commitdiff \| tree
2020-05-04	Ben Soares	JAL-3608 streamlined LaF methods and allow specificying...	commit \| commitdiff \| tree
2020-05-03	Ben Soares	JAL-3608 also look at user pref PREFERRED_LAF	commit \| commitdiff \| tree
2020-05-01	Ben Soares	JAL-3608 Now reporting the actual LookAndFeel in Java...	commit \| commitdiff \| tree
2020-05-01	Ben Soares	JAL-3608 Added java builtin NimbusLookAndFeel option...	commit \| commitdiff \| tree
2020-04-30	Ben Soares	JAL-3608 Enforcing MetalLookAndFeel as default on linux...	commit \| commitdiff \| tree
2020-04-30	Ben Soares	JAL-3608 Added 'metal' option for laf property	commit \| commitdiff \| tree
2020-04-29	Ben Soares	JAL-3611 added quotation marks for appdir argument...	commit \| commitdiff \| tree
2020-04-23	soares	JAL-3608 JAL-3416 Added a 'gtk' option. Not currently...	commit \| commitdiff \| tree
2020-04-22	soares	JAL-3225 save auto formatting settings in org.eclipse...	commit \| commitdiff \| tree
2020-04-22	soares	JAL-3608 saved in Eclipse with auto formatting	commit \| commitdiff \| tree
2020-04-22	Ben Soares	JAL-3608 Added CrossPlatform LaF and made configurable...	commit \| commitdiff \| tree
2020-04-21	Ben Soares	JAL-3577 changed default RELEASE dir in build.gradle...	commit \| commitdiff \| tree
2020-04-21	Ben Soares	JAL-3577 Added newer install dirs to the deletion list...	commit \| commitdiff \| tree
2020-04-21	Ben Soares	JAL-3602 Added configuration for enforced use of UTF...	commit \| commitdiff \| tree
2020-04-09	Ben Soares	JAL-3588 Remove Examples folder in windows Program...	commit \| commitdiff \| tree
2020-04-07	soares	merge from develop: the fixy bit	commit \| commitdiff \| tree
2020-04-07	soares	merge from develop: the rest of the changes	commit \| commitdiff \| tree
2020-04-07	soares	merge from develop: Most of the changes	commit \| commitdiff \| tree
2020-04-07	Ben Soares	JAL-3577 improvement to non-release DMG background...	commit \| commitdiff \| tree
2020-04-07	Ben Soares	Merge branch 'task/JAL-3577_Jalview_Test_installers...	commit \| commitdiff \| tree
2020-04-07	Ben Soares	JAL-3577 Added DEVELOP DMG styling. Improved TEST-RELEASE...	commit \| commitdiff \| tree
2020-04-06	Ben Soares	JAL-3577 Fixed Jalview Programme Group in Windows menu...	commit \| commitdiff \| tree
2020-04-06	Ben Soares	JAL-3577 Moved application Categories for freedesktop...	commit \| commitdiff \| tree
2020-04-06	Ben Soares	JAL-3577 removed debugging	commit \| commitdiff \| tree
2020-04-06	Ben Soares	Merge branch 'task/JAL-3577_Jalview_Test_installers...	commit \| commitdiff \| tree
2020-04-06	Ben Soares	JAL-3577 Added existing and new Application IDs for...	commit \| commitdiff \| tree
2020-04-04	Ben Soares	JAL-3577 Added DS_Store for Test release to look like...	commit \| commitdiff \| tree
2020-04-03	Ben Soares	JAL-3577 Added a jalviewt scheme ONLY to TEST-RELEASE...	commit \| commitdiff \| tree
2020-04-03	Ben Soares	JAL-3577 cleaned up old DMG files. Added NON-RELEASE...	commit \| commitdiff \| tree
2020-04-02	Ben Soares	JAL-3572 Added getdown Implementation-Version to getdown...	commit \| commitdiff \| tree
2020-04-02	Ben Soares	Merge branch 'improvement/JAL-3394_added_categories_to_unix_...	commit \| commitdiff \| tree
2020-04-01	soares	JAL-3438 Added spotless task to use the utils/eclipse...	commit \| commitdiff \| tree
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