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2020-03-06	Ben Soares	JAL-3529 improved regex in Stockholm UNIPROT accession...	commit \| commitdiff \| tree
2020-02-12	Ben Soares	JAL-3289 Updated doc/building.md to explain possible...	commit \| commitdiff \| tree
2020-01-29	Ben Soares	JAL-3341 Increase number of lines looked at by test...	commit \| commitdiff \| tree
2019-11-01	Ben Soares	JAL-3474 removed all .cvsignore files stored in the...	commit \| commitdiff \| tree
2019-07-05	Ben Soares	JAL-1544 fixed a html encoding of '<' (%lt; -> &lt...	commit \| commitdiff \| tree
2019-07-04	Ben Soares	JAL-3225 try/catch for non-deprecated/deprecated property...	commit \| commitdiff \| tree
2019-07-04	Ben Soares	JAL-3353 Change to build.gradle to use the file://...	commit \| commitdiff \| tree
2019-07-04	Ben Soares	JAL-3348 fixed an internal href in help to allow building	commit \| commitdiff \| tree
2019-07-04	Ben Soares	JAL-3337 adjusted building doc as sourceDist uses gradle...	commit \| commitdiff \| tree
2019-07-04	Ben Soares	Merge branch 'develop' into task/JAL-3348_document_cli_memor...	commit \| commitdiff \| tree
2019-07-03	Ben Soares	JAL-3348 memory.html documentation finished for 2.11.0	commit \| commitdiff \| tree
2019-07-03	Ben Soares	JAL-3348 jvmmempc in jvl file now works in linux	commit \| commitdiff \| tree
2019-07-03	Ben Soares	JAL-3348 jvmmempc multiple values shouldn't be merged	commit \| commitdiff \| tree
2019-07-03	Ben Soares	JAL-3348 start of new memory setting text	commit \| commitdiff \| tree
2019-07-03	Ben Soares	JAL-3348 jvmmempc allowed in jvl file	commit \| commitdiff \| tree
2019-07-03	Ben Soares	Merge branch 'develop' into task/JAL-3348_document_cli_memor...	commit \| commitdiff \| tree
2019-07-03	Ben Soares	JAL-3348 prepping getdown to pass JVM command line...	commit \| commitdiff \| tree
2019-07-02	Ben Soares	Merge branch 'develop' into task/JAL-3337_gradle_tasks_sourc...	commit \| commitdiff \| tree
2019-07-02	Ben Soares	JAL-3337 Tidied up j8libs in THIRDPARTYLIBS. Replaced...	commit \| commitdiff \| tree
2019-07-02	Ben Soares	Merge branch 'develop' into task/JAL-3337_gradle_tasks_sourc...	commit \| commitdiff \| tree
2019-07-02	Ben Soares	JAL-3337 Excluding j11modDir from source distribution...	commit \| commitdiff \| tree
2019-07-02	Ben Soares	JAL-3337 Updated the j11lib jars (don't need to be...	commit \| commitdiff \| tree
2019-07-02	Ben Soares	JAL-3337 starting to add to THIRDPARTYLIBS	commit \| commitdiff \| tree
2019-07-01	Ben Soares	JAL-3322 increase concurrent downloads in getdown	commit \| commitdiff \| tree
2019-07-01	Ben Soares	JAL-3333 removed unused variable	commit \| commitdiff \| tree
2019-07-01	Ben Soares	JAL-3337 Added some more files to source tar.gz file	commit \| commitdiff \| tree
2019-07-01	Ben Soares	JAL-3337 added gzip compression. Archive filename now...	commit \| commitdiff \| tree
2019-07-01	Ben Soares	JAL-3322 getdown jars with network timeouts applied	commit \| commitdiff \| tree
2019-07-01	Ben Soares	JAL-3332 Sensible default timeout values for network...	commit \| commitdiff \| tree
2019-07-01	Ben Soares	JAL-3333 using floats for smoother weighting	commit \| commitdiff \| tree
2019-07-01	Ben Soares	JAL-3337 added sourceDist task to gradle. Creates...	commit \| commitdiff \| tree
2019-07-01	Ben Soares	JAL-3337 update to JAVA-11-README to state current...	commit \| commitdiff \| tree
2019-07-01	Ben Soares	Merge branch 'develop' into task/JAL-3337_gradle_tasks_sourc...	commit \| commitdiff \| tree
2019-06-29	Ben Soares	JAL-3333 Sorry couldn't resist adding a bit of weighting...	commit \| commitdiff \| tree
2019-06-29	Ben Soares	JAL-3333 Title text now appears instantly. Altering...	commit \| commitdiff \| tree
2019-06-28	Ben Soares	Merge branch 'bug/JAL-3333_Blurry_fonts_in_WebServiceInfo_wi...	commit \| commitdiff \| tree
2019-06-28	Ben Soares	JAL-3333 changed RGB model. Tested in mojave and Windows...	commit \| commitdiff \| tree
2019-06-28	Ben Soares	JAL-3337 start of a Tar task	commit \| commitdiff \| tree
2019-06-28	Ben Soares	JAL-3333 Smooth rotation of image now too	commit \| commitdiff \| tree
2019-06-28	Ben Soares	JAL-3333 added height to rotating image preferred size	commit \| commitdiff \| tree
2019-06-28	Ben Soares	JAL-3333 Replaced title text rendered in animated image...	commit \| commitdiff \| tree
2019-06-28	Ben Soares	JAL-3335 much improved getdown background images	commit \| commitdiff \| tree
2019-06-28	Ben Soares	JAL-3322 Progress bar status tweaks	commit \| commitdiff \| tree
2019-06-28	Ben Soares	JAL-3322 getdown Application class fix	commit \| commitdiff \| tree
2019-06-28	Ben Soares	Merge branch 'develop' into JAL-3322_getdown_speed_improvement	commit \| commitdiff \| tree
2019-06-28	Ben Soares	JAL-3322 corrected fix to convertBuildingMD task fail...	commit \| commitdiff \| tree
2019-06-28	Ben Soares	Merge branch 'JAL-3322_getdown_speed_improvement' of...	commit \| commitdiff \| tree
2019-06-27	Ben Soares	JAL-3322 fixed convertBuildingMD task skipping in Windows	commit \| commitdiff \| tree
2019-06-27	Ben Soares	JAL-3322 linksCheck task output.	commit \| commitdiff \| tree
2019-06-27	Ben Soares	JAL-3322 Removed debug logging. Enabled backup install...	commit \| commitdiff \| tree
2019-06-26	Ben Soares	JAL-3322 Once background displayed, allow asynchronous...	commit \| commitdiff \| tree
2019-06-26	Ben Soares	JAL-3111 fixed an anchor name link preventing linkCheck...	commit \| commitdiff \| tree
2019-06-26	Ben Soares	JAL-3130 Added all groovy jars for groovy console	commit \| commitdiff \| tree
2019-06-26	Ben Soares	Merge branch 'develop' into improvement/JAL-3322_getdown_spl...	commit \| commitdiff \| tree
2019-06-26	Ben Soares	JAL-3322 Splashcreen now appears instantly with new...	commit \| commitdiff \| tree
2019-06-25	Ben Soares	JAL-3322 replaced invokeAndWait(r) with r.run() and...	commit \| commitdiff \| tree
2019-06-25	Ben Soares	JAL-3289 Ehancements to ARCHIVE building and script...	commit \| commitdiff \| tree
2019-06-25	Ben Soares	JAL-3289 ARCHIVE now implemented (requires a compiled...	commit \| commitdiff \| tree
2019-06-24	Ben Soares	JAL-3289 implemented CHANNEL=LOCAL,RELEASE,TEST-RELEASE...	commit \| commitdiff \| tree
2019-06-24	Ben Soares	JAL-3322 improve visibility of versioning of launcher	commit \| commitdiff \| tree
2019-06-24	Ben Soares	JAL-3289 Start looking at automating location in appbase...	commit \| commitdiff \| tree
2019-06-22	Ben Soares	JAL-3328 improvement to the EQinvoke code	commit \| commitdiff \| tree
2019-06-21	Ben Soares	JAL-3328 Made choice of invokeLater or invokeAndWait...	commit \| commitdiff \| tree
2019-06-21	Ben Soares	JAL-3328 JAL-3300 changed invokeLaters to invokeAndWaits...	commit \| commitdiff \| tree
2019-06-21	Ben Soares	JAL-3328 Getdown version number, changed to 1.8.3-1...	commit \| commitdiff \| tree
2019-06-21	Ben Soares	JAL-3328 Improved progress bar. Higher-res file icons...	commit \| commitdiff \| tree
2019-06-21	Ben Soares	JAL-3322 Adding a configurable getdown version number...	commit \| commitdiff \| tree
2019-06-21	Ben Soares	Merge branch 'develop' into improvement/JAL-3322_getdown_spl...	commit \| commitdiff \| tree
2019-06-20	Ben Soares	JAL-3322 New progress bar. Added option to report appbase...	commit \| commitdiff \| tree
2019-06-20	Ben Soares	JAL-3323 Improved macOS Old Jalview Uninstaller	commit \| commitdiff \| tree
2019-06-19	Ben Soares	Merge branch 'merge/JAL-3310_and_JAL-3300' into develop	commit \| commitdiff \| tree
2019-06-19	Ben Soares	JAL-3321 Last pieces of the getdown-launcher.jar upgrade...	commit \| commitdiff \| tree
2019-06-19	Ben Soares	JAL-3310 Removing i4jruntime.jar from dist. Not needed...	commit \| commitdiff \| tree
2019-06-19	Ben Soares	JAL-3321 Corrected the badly configured getdown-launcher...	commit \| commitdiff \| tree
2019-06-18	Ben Soares	Merge branch 'develop' into merge/JAL-3310_and_JAL...	commit \| commitdiff \| tree
2019-06-18	Ben Soares	JAL-3310 tidying unecessary files from getdown src...	commit \| commitdiff \| tree
2019-06-18	Ben Soares	JAL-3312 Fixed SHIFT-CMD/SHIFT-CTRL Key combinations...	commit \| commitdiff \| tree
2019-06-18	Ben Soares	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2019-06-18	Ben Soares	Merge branch 'develop' into merge/JAL-3310_and_JAL...	commit \| commitdiff \| tree
2019-06-17	Ben Soares	JAL-3310 JAL-3300 two getdown fixes merged	commit \| commitdiff \| tree
2019-06-17	Ben Soares	JAL-3310 Remove install4j from getdown-launcher.jar...	commit \| commitdiff \| tree
2019-06-14	Ben Soares	JAL-3295 pre-merged code with JAL-3295 branch which...	commit \| commitdiff \| tree
2019-06-14	Ben Soares	JAL-3278 A system.out.println turned into a cache.log...	commit \| commitdiff \| tree
2019-06-14	Ben Soares	JAL-3300 instant Splash screen on getdown	commit \| commitdiff \| tree
2019-06-14	Ben Soares	JAL-3130 added a bit of gradle support for compiling...	commit \| commitdiff \| tree
2019-06-13	Ben Soares	JAL-3295 Can now compile/run/debug in Eclipse with...	commit \| commitdiff \| tree
2019-06-12	Ben Soares	JAL-3295 Fixed CMD-select of sequences in alignment...	commit \| commitdiff \| tree
2019-06-12	Ben Soares	JAL-3299 Fixed gitHash and gitBranch definitions in...	commit \| commitdiff \| tree
2019-06-11	Ben Soares	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2019-06-11	Ben Soares	JAL-3248 improved pandoc lookup. Now comma-separated...	commit \| commitdiff \| tree
2019-06-10	Ben Soares	JAL-3248 quick fix for build.gradle when pandoc not...	commit \| commitdiff \| tree
2019-06-10	Ben Soares	JAL-3248 building.html now generated by pandoc 'brew...	commit \| commitdiff \| tree
2019-06-10	Ben Soares	JAL-3248 added conversion of building.md to building...	commit \| commitdiff \| tree
2019-06-10	Ben Soares	Merge branch 'develop' into task/JAL-3248_rewritten_building...	commit \| commitdiff \| tree
2019-06-10	Ben Soares	Merge branch 'task/JAL-3248_rewritten_building_md_instructio...	commit \| commitdiff \| tree
2019-06-10	Ben Soares	JAL-3248 Building from source documentation in markdown...	commit \| commitdiff \| tree
2019-06-10	Ben Soares	JAL-3248 Building from source documentation in markdown...	commit \| commitdiff \| tree
2019-06-07	Ben Soares	JAL-3248 Almost completed building doc	commit \| commitdiff \| tree
2019-06-07	Ben Soares	JAL-3248 a bit more	commit \| commitdiff \| tree
2019-06-07	Ben Soares	Merge branch 'develop' into task/JAL-3248_rewritten_building...	commit \| commitdiff \| tree
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