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2015-12-03	gmungoc	JAL-1827 code and comment tidy up	commit \| commitdiff \| tree
2015-12-02	gmungoc	JAL-1827 refactored to handle missing residues better	commit \| commitdiff \| tree
2015-12-02	gmungoc	JAL-1827 added overloaded method for convenience	commit \| commitdiff \| tree
2015-12-02	gmungoc	JAL-1827 reverted text on generic sequence fetcher...	commit \| commitdiff \| tree
2015-11-06	gmungoc	JAL-1946 unit tests (and comments) for PID() function	commit \| commitdiff \| tree
2015-11-06	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-10-28	gmungoc	JAL-1946 additional unit test cases for PID calculation	commit \| commitdiff \| tree
2015-10-23	gmungoc	JAL-1943 don't try to unmarshal non-xml files in V1...	commit \| commitdiff \| tree
2015-10-22	gmungoc	JAL-1932 TrimRegionCommand bug fix, tests and purge...	commit \| commitdiff \| tree
2015-10-08	gmungoc	JAL-1544 typo fix	commit \| commitdiff \| tree
2015-10-05	gmungoc	JAL-1812 set/return currentAlFrame for Groovy in headless...	commit \| commitdiff \| tree
2015-10-05	gmungoc	JAL-1684 JAL-1452 new applet parameters defaultColourNuc	commit \| commitdiff \| tree
2015-10-02	gmungoc	JAL-1815 restore split frame geometry including horizontal...	commit \| commitdiff \| tree
2015-09-28	gmungoc	JAL-1909 repaint complementary alignment panel after...	commit \| commitdiff \| tree
2015-09-25	gmungoc	JAL-1859 try hoverDelay of 0.1s in Jmol for more responsive...	commit \| commitdiff \| tree
2015-09-25	gmungoc	JAL-1815 restore split frame geometry correctly including...	commit \| commitdiff \| tree
2015-09-24	gmungoc	JAL-1905 parse url including & correctly	commit \| commitdiff \| tree
2015-09-24	gmungoc	JAL-1904 parse feature file colours on to alignment...	commit \| commitdiff \| tree
2015-09-22	gmungoc	JAL-1894 release notes updated	commit \| commitdiff \| tree
2015-09-22	gmungoc	JAL-1424 tidied output	commit \| commitdiff \| tree
2015-09-22	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-09-22	gmungoc	JAL-1859 adding "set hoverDelay 0.001;" to Jmol startup...	commit \| commitdiff \| tree
2015-09-21	gmungoc	JAL-1892 duplicate entry removed	commit \| commitdiff \| tree
2015-09-21	gmungoc	JAL-1799 update height of annotation labels to match...	commit \| commitdiff \| tree
2015-09-21	gmungoc	JAL-1892 Spanish additions for Jalview 2.9	commit \| commitdiff \| tree
2015-09-21	gmungoc	JAL-1152 set initial state of show alignment/sequence...	commit \| commitdiff \| tree
2015-09-21	gmungoc	JAL-1152 small change to match revised annotation sorting...	commit \| commitdiff \| tree
2015-09-21	gmungoc	JAL-1619 obsolete help removed	commit \| commitdiff \| tree
2015-09-18	gmungoc	JAL-1270 disable test as not really a test and goes...	commit \| commitdiff \| tree
2015-09-18	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-09-18	gmungoc	JAL-1805 typo corrected	commit \| commitdiff \| tree
2015-09-18	gmungoc	JAL-1788 typos corrected	commit \| commitdiff \| tree
2015-09-18	gmungoc	JAL-1788 broken href fixed	commit \| commitdiff \| tree
2015-09-18	gmungoc	JAL-1859 reinstated full path to file option (for local...	commit \| commitdiff \| tree
2015-09-18	gmungoc	JAL-1424 Ant task to report missing language bundle...	commit \| commitdiff \| tree
2015-09-16	gmungoc	JAL-1882 variable renamed to avoid confusion with member...	commit \| commitdiff \| tree
2015-09-16	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-09-16	gmungoc	JAL-1885 small fix to isVersionStringLaterThan plus...	commit \| commitdiff \| tree
2015-09-16	gmungoc	JAL-1684 typo correction	commit \| commitdiff \| tree
2015-09-16	gmungoc	JAL-1859 removed temporary test copy of pdb file	commit \| commitdiff \| tree
2015-09-16	gmungoc	JAL-1859 refactor duplicated code to new HttpUtils...	commit \| commitdiff \| tree
2015-09-16	gmungoc	JAL-1859 code tidy, remove 'absolute URL' option	commit \| commitdiff \| tree
2015-09-16	gmungoc	JAL-1859 working variable to aid inspection in debugger	commit \| commitdiff \| tree
2015-09-16	gmungoc	JAL-1859 try 1gaq.txt in /lang so it is in the built jar	commit \| commitdiff \| tree
2015-09-16	gmungoc	JAL-1859 debug logging removed	commit \| commitdiff \| tree
2015-09-16	gmungoc	JAL-1859 revert to resolving full path to PDB file	commit \| commitdiff \| tree
2015-09-16	gmungoc	JAL-1859 refactor addProtocol, setProtocolState as...	commit \| commitdiff \| tree
2015-09-16	gmungoc	JAL-1859 temporary debug output	commit \| commitdiff \| tree
2015-09-15	gmungoc	JAL-1859 use unresolved PDB filename	commit \| commitdiff \| tree
2015-09-15	gmungoc	JAL-1859 strip file name from applet documentbase	commit \| commitdiff \| tree
2015-09-15	gmungoc	JAL-1859 refactoring / debugging added	commit \| commitdiff \| tree
2015-09-14	gmungoc	JAL-1865 fixed so initial state of annotation sort...	commit \| commitdiff \| tree
2015-09-14	gmungoc	JAL-1851 add retrieved sequence's start (-1) to match...	commit \| commitdiff \| tree
2015-09-14	gmungoc	JAL-1880 updated mapping tests to ensure they handle...	commit \| commitdiff \| tree
2015-09-14	gmungoc	JAL-1270 test added for separatorListToArray	commit \| commitdiff \| tree
2015-09-14	gmungoc	JAL-1880 handle sequence offsets properly when mapping...	commit \| commitdiff \| tree
2015-09-14	gmungoc	JAL-1684 align added alignment to match original in...	commit \| commitdiff \| tree
2015-09-14	gmungoc	JAL-1684 align added alignment to match original in...	commit \| commitdiff \| tree
2015-09-14	gmungoc	JAL-1684 ensure cDNA placed above protein in SplitFrame	commit \| commitdiff \| tree
2015-09-09	gmungoc	JAL-857 debug=true for Jmol example diagnosis	commit \| commitdiff \| tree
2015-09-09	gmungoc	JAL-857 added debug output to track down document base...	commit \| commitdiff \| tree
2015-09-09	gmungoc	JAL-1619 update applet.currentAlignFrame on any menu...	commit \| commitdiff \| tree
2015-09-09	gmungoc	JAL-1619 'align protein as cDNA' now leaves unmapped...	commit \| commitdiff \| tree
2015-09-08	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-09-08	gmungoc	JAL-1859 debug output of pdb mappings (mine and SSMs)	commit \| commitdiff \| tree
2015-09-08	gmungoc	JAL-1859 reverted to signed JalviewApplet.jar!	commit \| commitdiff \| tree
2015-09-08	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-09-08	gmungoc	JAL-1859 Jmol applet black background; fix _jvmols...	commit \| commitdiff \| tree
2015-09-07	gmungoc	JAL-1859 Jmol linked applet updated to use Jmol2.js	commit \| commitdiff \| tree
2015-09-07	gmungoc	JAL-1636 translate stop codon as '', mouseover as...	commit \| commitdiff \| tree
2015-09-07	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-09-07	gmungoc	JAL-1152 check 'autocalculated' not 'null sequenceRef...	commit \| commitdiff \| tree
2015-09-04	gmungoc	JAL-1859 jmolFindTarget not JmolFindTarget	commit \| commitdiff \| tree
2015-09-04	gmungoc	JAL-1859 embedded Jmol applet example updated for Jmol...	commit \| commitdiff \| tree
2015-09-03	gmungoc	JAL-1859 removed unneeded dependency on package not...	commit \| commitdiff \| tree
2015-09-03	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-09-03	gmungoc	JAL-1690 scaleProteinAsCdna new optional attribute...	commit \| commitdiff \| tree
2015-09-03	gmungoc	JAL-1828 lookup table to convert MSE to MET when parsing...	commit \| commitdiff \| tree
2015-09-03	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-09-02	gmungoc	JAL-1544 spelling	commit \| commitdiff \| tree
2015-09-02	gmungoc	JAL-1355 User error text externalised to message bundle	commit \| commitdiff \| tree
2015-09-02	gmungoc	JAL-1768 set initial 'enabled' state for id width label...	commit \| commitdiff \| tree
2015-09-02	gmungoc	JAL-1264 test made i18n robust	commit \| commitdiff \| tree
2015-09-02	gmungoc	JAL-1768 enable fixed width output when auto-width...	commit \| commitdiff \| tree
2015-09-02	gmungoc	JAL-1843 fixed input/add from textbox; added @Override...	commit \| commitdiff \| tree
2015-09-02	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-09-02	gmungoc	JAL-1619 additions, standardised menu item symbols	commit \| commitdiff \| tree
2015-09-02	gmungoc	JAL-1681 mention of cDNA consensus added	commit \| commitdiff \| tree
2015-09-02	gmungoc	JAL-1673 new test to verify transferRESNUMFeatures()	commit \| commitdiff \| tree
2015-09-02	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-09-01	gmungoc	JAL-1693 split frame opened for get xrefs, translate...	commit \| commitdiff \| tree
2015-09-01	gmungoc	JAL-1672 additional assertions added	commit \| commitdiff \| tree
2015-09-01	gmungoc	JAL-1355 user error message text externalised	commit \| commitdiff \| tree
2015-08-28	gmungoc	JAL-1836 temporary workaround for negative resNumIns...	commit \| commitdiff \| tree
2015-08-27	gmungoc	JAL-1270 comments added regarding required remote service	commit \| commitdiff \| tree
2015-08-27	gmungoc	JAL-1759 updated unit test for removal of trim on Atom...	commit \| commitdiff \| tree
2015-08-27	gmungoc	JAL-1830 tests relocated to AlignViewportTest after...	commit \| commitdiff \| tree
2015-08-27	gmungoc	JAL-1627 updated expected tooltip text in unit test	commit \| commitdiff \| tree
2015-08-27	gmungoc	JAL-1830 unit tests for removing (or not) mappings...	commit \| commitdiff \| tree
2015-08-27	gmungoc	JAL-1830 refactored so no jalview.gui references from...	commit \| commitdiff \| tree
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