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2018-02-12	Jim Procter	JAL-2780 use value of ’UNASSIGNED’ constant in assert...	commit \| commitdiff \| tree
2018-02-12	Jim Procter	JAL-2904 replaced assert for (getEnd()-getStart()+1...	commit \| commitdiff \| tree
2018-02-11	Jim Procter	JAL-2781 use SIFTs mapping rather than maxChain AlignSeq...	commit \| commitdiff \| tree
2018-02-11	Jim Procter	JAL-2780 JAL-2781 use PDBe numbering to map between...	commit \| commitdiff \| tree
2018-02-11	Jim Procter	JAL-2781 mark aligned positions via StructureMapping...	commit \| commitdiff \| tree
2018-02-11	Jim Procter	JAL-2780 JAL-2781 include a Mapping object in StructureMappi...	commit \| commitdiff \| tree
2018-02-11	Jim Procter	JAL-2780 JAL-2781 UNASSIGNED positions marked as Integer.Min	commit \| commitdiff \| tree
2018-02-11	Jim Procter	JAL-2781 fix test data for full length annotation	commit \| commitdiff \| tree
2018-02-09	Jim Procter	Use the “PDBe” or “PDB” numbering (starts from 1, correspond...	commit \| commitdiff \| tree
2018-02-09	Jim Procter	JAL-2780 JAL-2781 should always ensure SIFTS mappings...	commit \| commitdiff \| tree
2018-02-07	Jim Procter	JAL-2780 JAL-2781 run sequentially and ensure windows...	commit \| commitdiff \| tree
2018-02-07	Jim Procter	JAL-2780 JAL-2891 clear all windows always beforeTest...	commit \| commitdiff \| tree
2018-02-07	Jim Procter	JAL-2902 catch case where viewer is closed (therefore...	commit \| commitdiff \| tree
2018-02-07	Jim Procter	JAL-2902 thread off dialog close op to avoid deadlock...	commit \| commitdiff \| tree
2018-02-07	Jim Procter	JAL-2780 JAL-2781 first pass at failing test for incorrect...	commit \| commitdiff \| tree
2018-02-07	Jim Procter	JAL-2780 JAL-2781 JAL-2902 refactored helper method...	commit \| commitdiff \| tree
2018-02-07	Jim Procter	JAL-2902 - isBusy and hasMapping methods so client...	commit \| commitdiff \| tree
2018-02-07	Jim Procter	JAL-2780 JAL-2781 fix javadoc in line with behaviour...	commit \| commitdiff \| tree
2018-02-07	Jim Procter	JAL-2780 JAL-2781 JAL-2902 refactor ‘OK’ action to...	commit \| commitdiff \| tree
2018-02-07	Jim Procter	JAL-2780 JAL-2781 don’t assume contiguous mapping to...	commit \| commitdiff \| tree
2018-02-05	Jim Procter	JAL-2780 JAL-2781 (failing) test comparing location...	commit \| commitdiff \| tree
2018-02-05	Jim Procter	JAL-2780 JAL-2781 programmatically select structures...	commit \| commitdiff \| tree
2018-02-05	Jim Procter	JAL-2780 JAL-2871 only look up current table view once	commit \| commitdiff \| tree
2018-02-05	Jim Procter	JAL-2780 JAL-2781 test AlignmentI.findAnnotations locates...	commit \| commitdiff \| tree
2018-02-05	Jim Procter	JAL-2780 JAL-2781 - patch and first test for AlignmentI...	commit \| commitdiff \| tree
2018-01-26	Jim Procter	Merge branch 'releases/Release_2_10_3_Branch' into...	commit \| commitdiff \| tree
2018-01-24	Jim Procter	Merge branch 'develop' into releases/Release_2_10_3_Branch	commit \| commitdiff \| tree
2018-01-24	Jim Procter	JAL-2858 update release date and rejig what's new message	commit \| commitdiff \| tree
2018-01-23	Jim Procter	Merge branch 'develop' into releases/Release_2_10_3_Branch	commit \| commitdiff \| tree
2018-01-23	Jim Procter	JAL-2858 fix what's new	commit \| commitdiff \| tree
2018-01-23	Jim Procter	Merge branch 'develop' into releases/Release_2_10_3_Branch	commit \| commitdiff \| tree
2018-01-23	Jim Procter	JAL-2858 update latest release notes link in TOC	commit \| commitdiff \| tree
2018-01-23	Jim Procter	JAL-2859 release notes	commit \| commitdiff \| tree
2018-01-23	Jim Procter	JAL-2858 update release notes	commit \| commitdiff \| tree
2018-01-22	Jim Procter	Merge branch 'develop' into releases/Release_2_10_3_Branch	commit \| commitdiff \| tree
2018-01-22	Jim Procter	JAL-2858 release notes for 2.10.3b1 (including revision...	commit \| commitdiff \| tree
2018-01-22	Jim Procter	JAL-2858 bump version number for 2.10.3b1	commit \| commitdiff \| tree
2017-12-19	Jim Procter	JAL-2880 disabled non-functional test - Jmol parser...	commit \| commitdiff \| tree
2017-12-01	Jim Procter	Merge branch 'develop' into bugs/JAL-2780_JAL-2781_pdbnegati...	commit \| commitdiff \| tree
2017-11-30	Jim Procter	JAL-2858 tweak OSX specific jar resources in JNLP	commit \| commitdiff \| tree
2017-11-30	Jim Procter	Merge branch 'develop' into releases/Release_2_10_3_Branch	commit \| commitdiff \| tree
2017-11-30	Jim Procter	JAL-2849 release notes	commit \| commitdiff \| tree
2017-11-30	Jim Procter	Merge branch 'bug/JAL-2849' into develop	commit \| commitdiff \| tree
2017-11-30	Jim Procter	JAL-2849 JAL-2863 file format preferences TODO	commit \| commitdiff \| tree
2017-11-30	Jim Procter	JAL-2849 fix	commit \| commitdiff \| tree
2017-11-28	Jim Procter	Merge branch 'bug/JAL-2859_uniprottowrongpdbid' into...	commit \| commitdiff \| tree
2017-11-28	Jim Procter	JAL-2740 release notes	commit \| commitdiff \| tree
2017-11-28	Jim Procter	Merge branch 'bug/JAL-2740' into develop	commit \| commitdiff \| tree
2017-11-28	Jim Procter	JAL-2827 release notes	commit \| commitdiff \| tree
2017-11-28	Jim Procter	Merge branch 'bug/JAL-2827' into develop	commit \| commitdiff \| tree
2017-11-28	Jim Procter	JAL-2842 release notes	commit \| commitdiff \| tree
2017-11-28	Jim Procter	Merge branch 'bug/JAL-2842' into develop	commit \| commitdiff \| tree
2017-11-27	Jim Procter	JAL-2859 disambiguate with PDB ID if no file path	commit \| commitdiff \| tree
2017-11-27	Jim Procter	JAL-2859 failing test demonstrating sequences with...	commit \| commitdiff \| tree
2017-11-27	Jim Procter	Merge branch 'develop' into releases/Release_2_10_3_Branch	commit \| commitdiff \| tree
2017-11-27	Jim Procter	JAL-2851 JAL-2858 release notes for 2.10.3b1	commit \| commitdiff \| tree
2017-11-27	Jim Procter	Merge branch 'develop' into releases/Release_2_10_3_Branch	commit \| commitdiff \| tree
2017-11-27	Jim Procter	Merge branch 'bug/JAL-2851' into develop	commit \| commitdiff \| tree
2017-11-20	Jim Procter	JAL-2698 only allow InstallAnywhere launches with version...	commit \| commitdiff \| tree
2017-11-20	Jim Procter	JAL-2698 patch path for InstallAnywhere build. Webstart...	commit \| commitdiff \| tree
2017-11-17	Jim Procter	JAL-2698 tidy release notes and whats new	commit \| commitdiff \| tree
2017-11-17	Jim Procter	JAL-2698 source code licencing	commit \| commitdiff \| tree
2017-11-17	Jim Procter	JAL-2698 tidy up release notes	commit \| commitdiff \| tree
2017-11-17	Jim Procter	JAL-2698 Cached PDB Entries -> Cached Structures in...	commit \| commitdiff \| tree
2017-11-17	Jim Procter	JAL-2466 revised help text for sort by PID	commit \| commitdiff \| tree
2017-11-17	Jim Procter	JAL-2698 what’s new and release notes	commit \| commitdiff \| tree
2017-11-17	Jim Procter	JAL-2822 known defect for 2.10.3	commit \| commitdiff \| tree
2017-11-17	Jim Procter	Merge branch 'bug/JAL-2784' into develop	commit \| commitdiff \| tree
2017-11-17	Jim Procter	JAL-2841 JAL-2791 new known defect	commit \| commitdiff \| tree
2017-11-17	Jim Procter	JAL-2541 known defect	commit \| commitdiff \| tree
2017-11-17	Jim Procter	JAL-2684 clarify release notes	commit \| commitdiff \| tree
2017-11-17	Jim Procter	Merge branch 'bug/JAL-2821' into develop	commit \| commitdiff \| tree
2017-11-17	Jim Procter	JAL-2840 release notes	commit \| commitdiff \| tree
2017-11-17	Jim Procter	Merge branch 'bug/JAL-2837' into develop	commit \| commitdiff \| tree
2017-11-17	Jim Procter	Merge branch 'doc/JAL-2494_JAL-2828_mergefindAnnotation...	commit \| commitdiff \| tree
2017-11-17	Jim Procter	JAL-2811 release note	commit \| commitdiff \| tree
2017-11-17	Jim Procter	JAL-2541 not in 2.10.3, JAL-2831 signed off.	commit \| commitdiff \| tree
2017-11-17	Jim Procter	JAL-2698 11th hour release today	commit \| commitdiff \| tree
2017-11-17	Jim Procter	Merge branch 'bug/JAL-2831' into develop	commit \| commitdiff \| tree
2017-11-16	Jim Procter	JAL-2541 JAL-2829 JAL-2830 JAL-2822 catch all release...	commit \| commitdiff \| tree
2017-11-16	Jim Procter	Merge branch 'bug/JAL-2829deleteCharsWithGaps' into...	commit \| commitdiff \| tree
2017-11-14	Jim Procter	JAL-2758 update uniprot retrieval test	commit \| commitdiff \| tree
2017-11-13	Jim Procter	JAL-2758 release notes	commit \| commitdiff \| tree
2017-11-13	Jim Procter	JAL-2698 formatting	commit \| commitdiff \| tree
2017-11-13	Jim Procter	Merge branch 'features/JAL-2758_shorteruniprot' into...	commit \| commitdiff \| tree
2017-11-13	Jim Procter	JAL-2758 remove configurable behaviour - Uniprot sequences...	commit \| commitdiff \| tree
2017-11-13	Jim Procter	JAL-2758 typo	commit \| commitdiff \| tree
2017-11-13	Jim Procter	JAL-2698 what's new...	commit \| commitdiff \| tree
2017-11-13	Jim Procter	JAL-2810 release notes	commit \| commitdiff \| tree
2017-11-13	Jim Procter	Merge branch 'imp/JAL-2810_ftsIDtab' into develop	commit \| commitdiff \| tree
2017-11-13	Jim Procter	JAL-2698 stub for 2.10.3 new known issues entries	commit \| commitdiff \| tree
2017-11-13	Jim Procter	JAL-2702 groovy interpreter update and java 9 jnlp...	commit \| commitdiff \| tree
2017-11-13	Jim Procter	Merge branch 'bug/JAL-2702_groovyconsoleJava9' into...	commit \| commitdiff \| tree
2017-11-13	Jim Procter	JAL-2702 --illegal-access=warn for JVM launch	commit \| commitdiff \| tree
2017-11-13	Jim Procter	JAL-2702 update to groovy 2.4.12	commit \| commitdiff \| tree
2017-11-13	Jim Procter	JAL-2810 updated help docs for auto search checkbox...	commit \| commitdiff \| tree
2017-11-13	Jim Procter	JAL-2810 updated screenshots in documentation	commit \| commitdiff \| tree
2017-11-13	Jim Procter	JAL-2810 auto search checkbox state stored as user...	commit \| commitdiff \| tree
2017-11-13	Jim Procter	JAL-2810 mainFramTabs -> tabs	commit \| commitdiff \| tree
2017-11-13	Jim Procter	JAL-2810 simpler tooltip (assume user will work out...	commit \| commitdiff \| tree
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