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2021-10-19	Mateusz Warowny	JAL-3878 Refactoring SeqAnnotationServiceCalcWorker.	commit \| commitdiff \| tree
2021-10-13	Mateusz Warowny	JAL-3878 Add getCalcName to AlignCalcWorkerI.	commit \| commitdiff \| tree
2021-10-13	Mateusz Warowny	JAL-3878 Rename web service worker to more generic...	commit \| commitdiff \| tree
2021-10-09	Mateusz Warowny	Update annotation operation WIP	commit \| commitdiff \| tree
2021-10-07	Mateusz Warowny	JAL-3878 Add dataset and viewport arguments to ResultSupplier.	commit \| commitdiff \| tree
2021-10-05	Mateusz Warowny	JAL-3878 Annotation operation skeleton.	commit \| commitdiff \| tree
2021-10-01	Mateusz Warowny	JAL-3878 Fix workers done condition to account for...	commit \| commitdiff \| tree
2021-09-30	Mateusz Warowny	JAL-3878 Skip getting results of failed jobs.	commit \| commitdiff \| tree
2021-09-30	Mateusz Warowny	JAL-3878 Add job log messages reporting.	commit \| commitdiff \| tree
2021-09-30	Mateusz Warowny	JAL-3878 Fix null pointer exception when preparing...	commit \| commitdiff \| tree
2021-09-30	Mateusz Warowny	JAL-3878 Fetch sequences for alignment on menu action...	commit \| commitdiff \| tree
2021-09-30	Mateusz Warowny	JAL-3878 Split web services menu entries by programs...	commit \| commitdiff \| tree
2021-09-29	Mateusz Warowny	JAL-3878 Add isInteractive() method to Operation interface.	commit \| commitdiff \| tree
2021-09-29	Mateusz Warowny	JAL-3878 Add getName() to Operation interface.	commit \| commitdiff \| tree
2021-09-27	Mateusz Warowny	JAL-3878 Wire web services logic to UI elements.	commit \| commitdiff \| tree
2021-09-24	Mateusz Warowny	JAL-3878 Fire service changed event after discovery...	commit \| commitdiff \| tree
2021-09-24	Mateusz Warowny	JAL-3878 Fix incorrect value of isRunning in SlivkaWSDiscoverer	commit \| commitdiff \| tree
2021-09-24	Mateusz Warowny	JAL-3878 Move operation type from WebService to Operation.	commit \| commitdiff \| tree
2021-09-24	Mateusz Warowny	JAL-3878 Code reformatting.	commit \| commitdiff \| tree
2021-09-24	Mateusz Warowny	JAL-3878 Display results of completed alignment job	commit \| commitdiff \| tree
2021-09-24	Mateusz Warowny	JAL-3878 Change SERVER_ERROR.isSubmitted to false.	commit \| commitdiff \| tree
2021-09-24	Mateusz Warowny	JAL-3878 Move WSJob instantiation out of WebService...	commit \| commitdiff \| tree
2021-09-20	Mateusz Warowny	JAL-3878 Implement AlignmentOperation WIP	commit \| commitdiff \| tree
2021-09-20	Mateusz Warowny	JAL-3878 Create interface for web service operations	commit \| commitdiff \| tree
2021-09-20	Mateusz Warowny	JAL-3878 Implement slivka web service and discoverer.	commit \| commitdiff \| tree
2021-09-20	Mateusz Warowny	JAL-3878 Add web service executor class and instantiate...	commit \| commitdiff \| tree
2021-09-20	Mateusz Warowny	JAL-3878 Create base interfaces for new web services.	commit \| commitdiff \| tree
2021-09-20	Mateusz Warowny	JAL-3878 Remove throws declaration from param store...	commit \| commitdiff \| tree
2021-09-20	Mateusz Warowny	JAL-3878 Create Slivka Web Service adapter.	commit \| commitdiff \| tree
2021-09-20	Mateusz Warowny	JAL-3878 Initial preparation.	commit \| commitdiff \| tree
2021-07-29	Mateusz Warowny	Merge branch 'improvement/JAL-3848_slivka_0.8' into...	commit \| commitdiff \| tree
2021-07-27	Mateusz Warowny	Merge branch 'bug/JAL-3807_jpred-with-slivka' into...	commit \| commitdiff \| tree
2021-07-27	Mateusz Warowny	Merge commit '0b438477b16470202bddfecb54e0587036b37202...	commit \| commitdiff \| tree
2021-07-27	Mateusz Warowny	JAL-3066 Fix NullPointerException thrown when showing...	commit \| commitdiff \| tree
2021-07-23	Mateusz Warowny	JAL-3848 Update slivka client javajs library.	commit \| commitdiff \| tree
2021-07-21	Mateusz Warowny	JAL-3848 print exception for failed align jobs	commit \| commitdiff \| tree
2021-07-21	Mateusz Warowny	JAL-3848 add latest slivka-client fixes.	commit \| commitdiff \| tree
2021-07-09	Mateusz Warowny	Merge branch 'jpred-fix' into bug/JAL-3807_jpred-with...	commit \| commitdiff \| tree
2021-07-09	Mateusz Warowny	JAL-3807 Fix SlivkaWSInstance not fetching alignments.	commit \| commitdiff \| tree
2021-07-09	Mateusz Warowny	Merge branch 'bug/JAL-3849_aacon-parameters' into improvemen...	commit \| commitdiff \| tree
2021-07-09	Mateusz Warowny	JAL-3690 Remove references to old AlignCalcManager.	commit \| commitdiff \| tree
2021-07-08	Mateusz Warowny	JAL-3848 SlivkaParamSet: reformat code and add service...	commit \| commitdiff \| tree
2021-07-08	Mateusz Warowny	JAL-3848 Update slivka client library.	commit \| commitdiff \| tree
2021-07-08	Mateusz Warowny	JAL-3849 Remove join() which blocked the ui.	commit \| commitdiff \| tree
2021-02-22	Mateusz Warowny	JAL-3807 - Add single sequence capabilities to jws2...	commit \| commitdiff \| tree
2021-02-22	Mateusz Warowny	JAL-3807 - Move new JPred client to the jws2 package.	commit \| commitdiff \| tree
2021-02-22	Mateusz Warowny	JAL-3807 - Re-implement results processing.	commit \| commitdiff \| tree
2021-02-22	Mateusz	JAL-3807 JPred can now successfully submit and track...	commit \| commitdiff \| tree
2021-02-22	Mateusz Warowny	Merge branch 'bug/JAL-3809_ws_params_dialog_fix' into...	commit \| commitdiff \| tree
2021-02-22	Mateusz Warowny	Merge branch 'bug/JAL-3810_annotation_ws_stopping_abruptly...	commit \| commitdiff \| tree
2021-02-22	Mateusz Warowny	JAL-3809 - Fixed param edit dialog for jalviewjs.	commit \| commitdiff \| tree
2021-02-22	Mateusz Warowny	Merge branch 'feature/JAL-3690_callback-based-web-services...	commit \| commitdiff \| tree
2021-02-22	Mateusz	Merge branch 'feature/JAL-3690_callback-based-web-services...	commit \| commitdiff \| tree
2021-02-05	Mateusz Warowny	JAL-3810 - Add trace method to javascript implementation...	commit \| commitdiff \| tree
2021-02-05	Mateusz Warowny	JAL-3810 - Replace log.trace() calls with log.debug()	commit \| commitdiff \| tree
2020-07-22	Mateusz Warowny	JAL-3690 changed AWSThread to use Timer instead	commit \| commitdiff \| tree
2020-07-20	Mateusz Warowny	JAL-3690 alternative servers menu fix	commit \| commitdiff \| tree
2020-07-17	Mateusz Warowny	JAL-3690 restore jws1 JPred	commit \| commitdiff \| tree
2020-07-16	Mateusz Warowny	JAL-3690 switching to CompletableFuture to allow chaining	commit \| commitdiff \| tree
2020-07-15	Mateusz Warowny	JAL-3690 mark JalviewChangeSupport as deprecated	commit \| commitdiff \| tree
2020-07-15	Mateusz Warowny	JAL-3690 refactoring web-services discovery	commit \| commitdiff \| tree
2020-07-09	Mateusz Warowny	Merge branch 'feature/JAL-3686_slivka_client_js_update...	commit \| commitdiff \| tree
2020-07-09	Mateusz Warowny	Merge branch 'feature/JAL-3686_slivka_client_js_update...	commit \| commitdiff \| tree
2020-07-08	Mateusz Warowny	JAL-3683 retrieve job status to output stream	commit \| commitdiff \| tree
2020-07-08	Mateusz Warowny	JAL-6386 update slivka client for j2s compatibility	commit \| commitdiff \| tree
2020-07-08	Mateusz Warowny	Merge branch 'feature/JAL-3515-slivka-preferences'...	commit \| commitdiff \| tree
2019-10-17	Mateusz Warowny	JAL-3066 Slivka client update for changed api endpoints.	commit \| commitdiff \| tree
2019-10-11	Mateusz Warowny	JAL-3066 Create labels for fields and hack it to work...	commit \| commitdiff \| tree
2019-10-11	Mateusz Warowny	Merge remote-tracking branch 'origin/tasks/JAL-3070_wsinterf...	commit \| commitdiff \| tree
2019-10-11	Mateusz Warowny	JAL-3066 change service type naming to avoid menu entry...	commit \| commitdiff \| tree
2019-10-09	Mateusz Warowny	JAL-3066 Read parameters directly from args list allowing...	commit \| commitdiff \| tree
2019-10-09	Mateusz Warowny	Update slivka-client library: multiple form field values.	commit \| commitdiff \| tree
2019-10-09	Mateusz Warowny	JAL-3066 Fix log files retrieval.	commit \| commitdiff \| tree
2019-10-07	Mateusz Warowny	Jal-3066 Retrieve job log and error log from the server.	commit \| commitdiff \| tree
2019-10-07	Jim Procter	Revert "JAL-3070 JAL-3066 fix initialisation of slivka...	commit \| commitdiff \| tree
2019-10-07	Mateusz Warowny	JAL-3066 AACon: pass the instance name of the service...	commit \| commitdiff \| tree
2019-10-07	Mateusz Warowny	JAL-3066 Check if annotation and features are present...	commit \| commitdiff \| tree
2019-10-07	Mateusz Warowny	Merge remote-tracking branch 'origin/tasks/JAL-3070_wsinterf...	commit \| commitdiff \| tree
2019-10-04	Mateusz Warowny	Merge remote-tracking branch 'origin/tasks/JAL-3070_wsinterf...	commit \| commitdiff \| tree
2019-10-01	Mateusz Warowny	JAL-3066 Sequence annotation services.	commit \| commitdiff \| tree
2019-09-27	Mateusz Warowny	JAL-3066 Automatically discoverable Protein sequence...	commit \| commitdiff \| tree
2019-09-27	Mateusz Warowny	Merge remote-tracking branch 'origin/tasks/JAL-3070_wsinterf...	commit \| commitdiff \| tree
2019-09-23	Mateusz Warowny	JAL-3066 Annotation Service Instance stub	commit \| commitdiff \| tree
2019-09-23	Mateusz Warowny	SlivkaWSDiscoverer formatting fix	commit \| commitdiff \| tree
2019-09-23	Mateusz Warowny	JAL-3066 Move common web service methods to abstract...	commit \| commitdiff \| tree
2019-09-19	Mateusz Warowny	JAL-3066 Auto discover multiple sequence alignment...	commit \| commitdiff \| tree
2019-09-16	Mateusz Warowny	Set the initial value of the choice field to the default...	commit \| commitdiff \| tree
2019-09-16	Mateusz Warowny	Add the remaining msa services to the Discoverer	commit \| commitdiff \| tree
2019-09-11	Mateusz Warowny	Change choice field to use dropbox instead of radio...	commit \| commitdiff \| tree
2019-09-11	Mateusz Warowny	Create generic msa service instance	commit \| commitdiff \| tree
2019-09-06	Mateusz Warowny	Merge remote-tracking branch 'origin/alpha/JAL-3066_Jalview_...	commit \| commitdiff \| tree
2019-09-06	Mateusz Warowny	JAL-3066 Working custom parameters for clustalo	commit \| commitdiff \| tree
2019-09-06	Mateusz Warowny	JAL-1426 Replacing old apache-http jars.	commit \| commitdiff \| tree
2019-09-05	Mateusz Warowny	JAL-3066 Implement clustaloWS using slivka system.	commit \| commitdiff \| tree

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