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2019-03-01	gmungoc	Merge branch 'bug/JAL-3161annotationTooltipRange' into...	commit \| commitdiff \| tree
2019-03-01	gmungoc	Merge branch 'bug/JAL-3158selectionBroadcasts' into...	commit \| commitdiff \| tree
2019-03-01	gmungoc	Merge branch 'bug/JAL-3164complementOverview' into...	commit \| commitdiff \| tree
2019-03-01	gmungoc	Merge branch 'merge/JAL-3140' into develop	commit \| commitdiff \| tree
2019-03-01	gmungoc	JAL-3140 update for change to SequenceI api	commit \| commitdiff \| tree
2019-03-01	gmungoc	Merge branch 'feature/intervalStoreJ' into merge/JAL...	commit \| commitdiff \| tree
2019-03-01	gmungoc	JAL-3140 reduced coupling to intervalstore.jar	commit \| commitdiff \| tree
2019-02-28	gmungoc	JAL-3140 confine intervalstore imports to jalview.datamodel...	commit \| commitdiff \| tree
2019-02-28	gmungoc	Merge branch 'bug/JAL-2420revealAllMenu' into develop	commit \| commitdiff \| tree
2019-02-28	gmungoc	Merge branch 'bug/JAL-3166npeAllRowsHidden' into develop	commit \| commitdiff \| tree
2019-02-28	gmungoc	Merge branch 'feature/JAL-3169cancelOverwrite' into...	commit \| commitdiff \| tree
2019-02-28	gmungoc	Merge branch 'feature/JAL-3143ensemblJSON' into merge...	commit \| commitdiff \| tree
2019-02-28	gmungoc	Merge remote-tracking branch 'origin/feature/JAL-3141_backup...	commit \| commitdiff \| tree
2019-02-27	gmungoc	JAL-2527 default Overview 'hide hidden' i.e. WYSIWYG	commit \| commitdiff \| tree
2019-02-26	gmungoc	JAL-3201 group colour schemes distinct instances	commit \| commitdiff \| tree
2019-02-25	gmungoc	JAL-3200 fast lookup of DSSP3 notation	commit \| commitdiff \| tree
2019-02-24	gmungoc	JAL-3198 don't recalculate group conservation for Id...	commit \| commitdiff \| tree
2019-02-24	gmungoc	JAL-3198 SequenceGroup 'bulk constructor' without duplicates...	commit \| commitdiff \| tree
2019-02-22	gmungoc	JAL-2915 don't recalculate Overview on scroll to position...	commit \| commitdiff \| tree
2019-02-22	gmungoc	JAL-2738 don't set AF as feature score	commit \| commitdiff \| tree
2019-02-07	gmungoc	JAL-3140 updated to latest intervalstore.jar	commit \| commitdiff \| tree
2019-02-04	gmungoc	JAL-3143 update unit test for ID -> id change	commit \| commitdiff \| tree
2019-01-29	gmungoc	JAL-3143 format alleles array for feature description	commit \| commitdiff \| tree
2019-01-24	gmungoc	JAL-3018 Ensembl version updated to 9.0	commit \| commitdiff \| tree
2019-01-23	gmungoc	JAL-3063 correct handling of absent choice element...	commit \| commitdiff \| tree
2019-01-18	gmungoc	JAL-3143 'id' not 'ID' attribute drives generation...	commit \| commitdiff \| tree
2019-01-14	gmungoc	JAL-3186 remove Variable Colour from popup menu	commit \| commitdiff \| tree
2019-01-14	gmungoc	JAL-3186 remove duplicate message keys	commit \| commitdiff \| tree
2019-01-14	gmungoc	JAL-2069 wider dialog so all fields show!	commit \| commitdiff \| tree
2019-01-14	gmungoc	JAL-2069 clear any error colour when setting threshold...	commit \| commitdiff \| tree
2019-01-14	gmungoc	JAL-3125 tidy up	commit \| commitdiff \| tree
2019-01-14	gmungoc	JAL-3125 avoid slider 'rounding' threshold field value	commit \| commitdiff \| tree
2019-01-03	gmungoc	JAL-1889 additional test for clover-added fields	commit \| commitdiff \| tree
2019-01-03	gmungoc	JAL-1889 ignore 'synthetic' fields added for jacoco	commit \| commitdiff \| tree
2018-12-21	gmungoc	JAL-1767 minimise local variable scope	commit \| commitdiff \| tree
2018-12-19	gmungoc	JAL-2791 JAL-2808 correct Javadoc for api method	commit \| commitdiff \| tree
2018-12-19	gmungoc	JAL-3032 ignore /site also on non-JS branches	commit \| commitdiff \| tree
2018-12-10	gmungoc	JAL-1421 added type to List and Vector	commit \| commitdiff \| tree
2018-12-10	gmungoc	JAL-3169 leave file browser open on Cancel in overwrite...	commit \| commitdiff \| tree
2018-12-06	gmungoc	JAL-1854 fix Checkstyle import violations	commit \| commitdiff \| tree
2018-12-06	gmungoc	JAL-1854 Checkstyle updated to 8.12	commit \| commitdiff \| tree
2018-12-03	gmungoc	JAL-3063 Castor removed from codebase	commit \| commitdiff \| tree
2018-12-03	gmungoc	Merge branch 'feature/JAL-3063JAXB' into feature/JAL...	commit \| commitdiff \| tree
2018-11-30	gmungoc	JAL-2420 don't offer Reveal All over alignment panel	commit \| commitdiff \| tree
2018-11-30	gmungoc	JAL-3166 catch NPE if all sequences are hidden	commit \| commitdiff \| tree
2018-11-29	gmungoc	JAL-3140 updated IntervalStore jar	commit \| commitdiff \| tree
2018-11-29	gmungoc	JAL-3140 named tagged version of intervalstore.jar	commit \| commitdiff \| tree
2018-11-29	gmungoc	JAL-3140 NCList now via IntervalStore library	commit \| commitdiff \| tree
2018-11-28	gmungoc	JAL-3164 redraw complement overview on hide columns	commit \| commitdiff \| tree
2018-11-28	gmungoc	JAL-3158 additional calls to reset 'selection changed...	commit \| commitdiff \| tree
2018-11-22	gmungoc	JAL-3161 limit tooltip and status updates to visible...	commit \| commitdiff \| tree
2018-11-08	gmungoc	JAL-1889 ignore Clover instrumentation in test (second...	commit \| commitdiff \| tree
2018-11-08	gmungoc	JAL-1889 unit test tweaks for running on server	commit \| commitdiff \| tree
2018-10-25	gmungoc	JAL-3143 unit tests updated for code changes!	commit \| commitdiff \| tree
2018-10-25	gmungoc	JAL-3143 comma-delimited feature attributes for alleles,	commit \| commitdiff \| tree
2018-10-25	gmungoc	JAL-3143 fetch Ensembl(Genomes) features as JSON not GFF	commit \| commitdiff \| tree
2018-09-28	gmungoc	JAL-3063 service param files read/saved using JAXB...	commit \| commitdiff \| tree
2018-09-28	gmungoc	JAL-3063 top level element added to JalviewWsParamSet.xsd	commit \| commitdiff \| tree
2018-09-28	gmungoc	JAL-3063 comments re use of xjc to generate Java binding...	commit \| commitdiff \| tree
2018-09-24	gmungoc	JAL-3063 tidy commented out code	commit \| commitdiff \| tree
2018-09-21	gmungoc	JAL-3063 wrappers with check for null getting optional...	commit \| commitdiff \| tree
2018-09-20	gmungoc	JAL-2843 tweaks to help text for filters	commit \| commitdiff \| tree
2018-09-20	gmungoc	JAL-2843 help text for colour by attribute, feature...	commit \| commitdiff \| tree
2018-09-19	gmungoc	JAL-3120 preserve plain colour value when changing...	commit \| commitdiff \| tree
2018-09-19	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2018-09-19	gmungoc	JAL-2808 JAL-3032 drop tabbed layout for Colours and...	commit \| commitdiff \| tree
2018-09-19	gmungoc	JAL-3063 use JAXB for 'Save as Project' and load project...	commit \| commitdiff \| tree
2018-09-19	gmungoc	JAL-3063 unit test for save/load project switched to...	commit \| commitdiff \| tree
2018-09-18	gmungoc	JAL-3063 Save/Load user defined colours using JAXB	commit \| commitdiff \| tree
2018-09-18	gmungoc	JAL-3063 Save/Load user colour scheme using JAXB	commit \| commitdiff \| tree
2018-09-18	gmungoc	JAL-3063 top level element added to colours schema...	commit \| commitdiff \| tree
2018-09-18	gmungoc	JAL-3063 New View via JAXB	commit \| commitdiff \| tree
2018-09-18	gmungoc	JAL-3063 temporary extra menu option to save/load project...	commit \| commitdiff \| tree
2018-09-18	gmungoc	JAL-3063 first version of Jalview2XML using JAXB to...	commit \| commitdiff \| tree
2018-09-18	gmungoc	JAL-3063 JAXB binding classes generated by xjc from...	commit \| commitdiff \| tree
2018-09-18	gmungoc	JAL-3063 tweak schema so JAXB tool xjc recognises XML...	commit \| commitdiff \| tree
2018-09-18	gmungoc	JAL-3063 tweak schema so JAXB generates enums for enumerated...	commit \| commitdiff \| tree
2018-09-17	gmungoc	JAL-3116 test method renamed to match code	commit \| commitdiff \| tree
2018-09-17	gmungoc	JAL-3116 unit tests adapted to EMBL over JAXB	commit \| commitdiff \| tree
2018-09-14	gmungoc	JAL-3116 parse EMBL XML with JAXB (todo: update unit...	commit \| commitdiff \| tree
2018-09-13	gmungoc	JAL-3116 Uniprot XML unmarshalled using JAXB not Castor	commit \| commitdiff \| tree
2018-09-12	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2018-09-12	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2018-09-12	gmungoc	JAL-1551 reinstated Save actions	commit \| commitdiff \| tree
2018-09-03	gmungoc	Merge branch 'trialMerge' into releases/Release_2_10_5_Branch	commit \| commitdiff \| tree
2018-09-03	gmungoc	JAL-3076 fetch Ensembl sequence as JSON instead of...	commit \| commitdiff \| tree
2018-08-31	gmungoc	JAL-3003 remove redundant call to drawSelectionGroup	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-3059 use correct border colour for groups	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-3003 draw selection group outline on main graphics...	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-247 comment to clarify wrapped print algorithm	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-247 print/export wrapped uses common code to draw...	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-3087 include full alignment height in repeating...	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-247 draw/print sequence ids now uses common code...	commit \| commitdiff \| tree
2018-08-15	gmungoc	JAL-3080 remove tree partition if no groups created	commit \| commitdiff \| tree
2018-08-14	gmungoc	JAL-3078 reset Tree font (only!) on Cancel	commit \| commitdiff \| tree
2018-08-10	gmungoc	JAL-3018 updated to Ensembl REST 7.0	commit \| commitdiff \| tree
2018-08-10	gmungoc	JAL-3076 refactor for more efficient scan of 'gene...	commit \| commitdiff \| tree
2018-08-10	gmungoc	JAL-3076 fetch Ensembl sequence as JSON instead of...	commit \| commitdiff \| tree
2018-06-07	gmungoc	JAL-2755 correct Javadoc and error handling	commit \| commitdiff \| tree
2018-06-07	gmungoc	JAL-2920 format/comment tidy	commit \| commitdiff \| tree
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