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2017-08-04	Jim Procter	JAL-2418 JAL-1632 JAL-2416 calculations dialog documentation...	commit \| commitdiff \| tree
2017-08-04	Jim Procter	JAL-2418 new features in release notes JAL-1933 JAL...	commit \| commitdiff \| tree
2017-08-04	Jim Procter	JAL-2418 release notes	commit \| commitdiff \| tree
2017-08-04	Jim Procter	JAL-1551 JAL-2418 reformat releases.html to remove...	commit \| commitdiff \| tree
2017-08-04	Jim Procter	Merge branch 'develop' into documentation/JAL-2418_release2102	commit \| commitdiff \| tree
2017-08-04	gmungoc	JAL-2500 JAL-2365 lightGray changed to lightgray for...	commit \| commitdiff \| tree
2017-08-04	gmungoc	JAL-2500 JAL-2365 lightGray changed to gray in example...	commit \| commitdiff \| tree
2017-08-03	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-08-03	Jim Procter	Merge branch 'develop' into documentation/JAL-2418_release2102	commit \| commitdiff \| tree
2017-08-03	Jim Procter	Merge branch 'develop' of http://source.jalview.org...	commit \| commitdiff \| tree
2017-08-03	Jim Procter	JAL-2418 what’s new - faster PCA, calculations UI and...	commit \| commitdiff \| tree
2017-08-03	Jim Procter	JAL-2418 release notes	commit \| commitdiff \| tree
2017-08-03	Jim Procter	JAL-1551 updated source code formatting settings from...	commit \| commitdiff \| tree
2017-08-03	Jim Procter	Merge branch 'bug/JAL-2591overviewupdate' into develop	commit \| commitdiff \| tree
2017-08-02	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-08-02	Jim Procter	Merge branch 'develop' into documentation/JAL-2418_release2102	commit \| commitdiff \| tree
2017-08-02	Jim Procter	Merge branch 'bug/JAL-2321_merged' into develop	commit \| commitdiff \| tree
2017-08-02	Jim Procter	Merge branch 'bug/JAL-2321' into bug/JAL-2321_merged	commit \| commitdiff \| tree
2017-08-02	Jim Procter	JAL-2418 release notes for JAL-2582	commit \| commitdiff \| tree
2017-08-01	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-08-01	Jim Procter	JAL-2418 known defect for eggnog tree import (JAL-2590)	commit \| commitdiff \| tree
2017-08-01	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-08-01	Jim Procter	Merge branch 'develop' into documentation/JAL-2418_release2102	commit \| commitdiff \| tree
2017-08-01	Jim Procter	Merge branch 'bug/JAL-2632' into develop	commit \| commitdiff \| tree
2017-08-01	Jim Procter	JAL-2418 documentation	commit \| commitdiff \| tree
2017-08-01	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-08-01	Jim Procter	JAL-2631 JAL-2623 JAL-2624 JAL-2630 JAL-147 JAL-2034...	commit \| commitdiff \| tree
2017-08-01	Jim Procter	JAL-2418 update 2.10.2 release date	commit \| commitdiff \| tree
2017-07-24	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-07-18	Jim Procter	JAL-2432 updated documentation for select/hide by annotation...	commit \| commitdiff \| tree
2017-06-30	Jim Procter	Merge branch 'bugs/JAL-2606_broken_jabaws22_IADependency...	commit \| commitdiff \| tree
2017-06-30	Jim Procter	JAL-2606 updated IA build for changed dependency due...	commit \| commitdiff \| tree
2017-06-11	Jim Procter	JAL-2418 updated release branch/version and release...	commit \| commitdiff \| tree
2017-06-05	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-06-05	Jim Procter	JAL-2590 release notes	commit \| commitdiff \| tree
2017-06-05	Jim Procter	Merge branch 'bug/JAL-2590' into develop	commit \| commitdiff \| tree
2017-06-05	Jim Procter	JAL-2590 patch for rendering eggnog trees with polytomies...	commit \| commitdiff \| tree
2017-06-05	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-06-05	Jim Procter	JAL-2576 release notes	commit \| commitdiff \| tree
2017-06-05	Jim Procter	Merge branch 'bug/JAL-2576' into develop	commit \| commitdiff \| tree
2017-06-05	Jim Procter	Merge branch 'bug/JAL-2586' into develop	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2228 java 1.7 compliance	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2291 updated docs	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2291 only hide/show columns intersecting with currently...	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2291 get bitset representing hidden columns	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2291 use HiddenColumns.hideMarkedBits and take...	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2291 method taking a BitSet for hiding columns	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2291 bug fix - BitSet.set is [start,end+1)	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2291 fixed broken asserts for SequenceI.getInsertionsAsBits	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2291 ‘Hide Insertions’ now operates on selection...	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2291 SequenceI.getInsertionsAsBits for convenient...	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2582 comment about IDs being lost if they resembl...	commit \| commitdiff \| tree
2017-06-04	Jim Procter	JAL-2582 recognise ENS…P peptide IDs and make two getParent...	commit \| commitdiff \| tree
2017-06-02	Jim Procter	Merge branch 'bug/JAL-2578' into develop	commit \| commitdiff \| tree
2017-06-02	Jim Procter	Merge branch 'bug/JAL-2577' into develop	commit \| commitdiff \| tree
2017-06-02	Jim Procter	Merge branch 'features/JAL-2228_featureSetCounts_minRangeTwe...	commit \| commitdiff \| tree
2017-06-02	Jim Procter	JAL-2228 always create zero score annotations, since...	commit \| commitdiff \| tree
2017-06-02	Jim Procter	JAL-2228 always set minimum for count to zero for annotation row	commit \| commitdiff \| tree
2017-06-01	Jim Procter	Merge branch 'features/JAL-1648_cache_user_inputs'...	commit \| commitdiff \| tree
2017-05-31	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-05-31	Jim Procter	JAL-2418 release notes for JAL-2547, JAL-2563, JAL...	commit \| commitdiff \| tree
2017-05-31	Jim Procter	Merge branch 'JAL-2571' into develop	commit \| commitdiff \| tree
2017-05-31	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-05-31	Jim Procter	JAL-2398 - updated groovy script for direct field modification	commit \| commitdiff \| tree
2017-05-31	Jim Procter	JAL-2418 JAL-2563 release notes	commit \| commitdiff \| tree
2017-05-31	Jim Procter	JAL-2418 typo	commit \| commitdiff \| tree
2017-05-31	Jim Procter	Merge branch 'develop' into documentation/JAL-2418_release2102	commit \| commitdiff \| tree
2017-05-29	Jim Procter	Merge branch 'bug/JAL-2034contextchange' into develop	commit \| commitdiff \| tree
2017-05-29	Jim Procter	JAL-2388 release notes	commit \| commitdiff \| tree
2017-05-29	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-05-29	Jim Procter	JAL-2520 properly documented as a fixed bug in release...	commit \| commitdiff \| tree
2017-05-29	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-05-29	Jim Procter	JAL-2465,JAL-2520,JAL-2533 release notes	commit \| commitdiff \| tree
2017-05-29	Jim Procter	Merge branch 'features/JAL-2465_No-mapping_Jmol-structures...	commit \| commitdiff \| tree
2017-05-29	Jim Procter	JAL-2533 update javadoc	commit \| commitdiff \| tree
2017-05-29	Jim Procter	JAL-2465 fixed groups for JmolViewerTest.testStructureLoadin...	commit \| commitdiff \| tree
2017-05-29	Jim Procter	Merge branch 'bug/JAL-2536' into develop	commit \| commitdiff \| tree
2017-05-29	Jim Procter	JAL-2536 tweak javadoc wording	commit \| commitdiff \| tree
2017-05-29	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-05-29	Jim Procter	JAL-2517 release notes	commit \| commitdiff \| tree
2017-05-29	Jim Procter	Merge branch 'bug/JAL-2517cancelAppletColour' into...	commit \| commitdiff \| tree
2017-05-29	Jim Procter	release notes	commit \| commitdiff \| tree
2017-05-29	Jim Procter	JAL-2418 updated JABAWS server in what’s new	commit \| commitdiff \| tree
2017-05-29	Jim Procter	JAL-2491 JAL-2526 JAL-2566 JAL-2563 JAL-2547 release...	commit \| commitdiff \| tree
2017-05-27	Jim Procter	Merge branch 'bug/JAL-2491' into develop	commit \| commitdiff \| tree
2017-05-27	Jim Procter	Merge branch 'bug/JAL-2547tooltipOnGap' into develop	commit \| commitdiff \| tree
2017-05-27	Jim Procter	Merge branch 'task/JAL-2562_SequenceI.findPosition...	commit \| commitdiff \| tree
2017-05-27	Jim Procter	JAL-2563 failing test to verify SetStatus returns position...	commit \| commitdiff \| tree
2017-05-27	Jim Procter	JAL-2563 test to verify SetStatus returns -1 so mouseOver...	commit \| commitdiff \| tree
2017-05-27	Jim Procter	Merge branch 'task/JAL-2562_SequenceI.findPosition...	commit \| commitdiff \| tree
2017-05-27	Jim Procter	JAL-2547 JAL-2562 rejig SetStatusMessage return value...	commit \| commitdiff \| tree
2017-05-27	Jim Procter	Merge branch 'task/JAL-2562_SequenceI.findPosition...	commit \| commitdiff \| tree
2017-05-27	Jim Procter	JAL-2526 test and documentation for SeqPanel.setStatus...	commit \| commitdiff \| tree
2017-05-27	Jim Procter	JAL-2562 javadoc TODO	commit \| commitdiff \| tree
2017-05-26	Jim Procter	Merge branch 'documentation/JAL-2418_release2102' into...	commit \| commitdiff \| tree
2017-05-26	Jim Procter	JAL-2418 updated JPred documentation and screenshot...	commit \| commitdiff \| tree
2017-05-26	Jim Procter	JAL-2418 JAL-2549 JABAWS 2.2 release notes	commit \| commitdiff \| tree
2017-05-26	Jim Procter	Merge branch 'features/JAL-2549_updateJABAWSto220'...	commit \| commitdiff \| tree
2017-05-25	Jim Procter	Merge branch 'develop' into features/JAL-1648_cache_user_inputs	commit \| commitdiff \| tree
2017-05-23	Jim Procter	JAL-2549 RNAAliFold result to annotation file roundtrip...	commit \| commitdiff \| tree
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