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2023-07-12	Mateusz Warowny	JAL-4199 Fix slivka client to parse feature fileters	commit \| commitdiff \| tree
2023-07-12	Mateusz Warowny	JAL-4199 remove viewport references from AlignmentTask	commit \| commitdiff \| tree
2023-07-12	Mateusz Warowny	JAL-4199 Fix interactive jobs not being stopped	commit \| commitdiff \| tree
2023-07-12	Mateusz Warowny	JAL-4199 Organise AlignCalcWorkerAdapter imports	commit \| commitdiff \| tree
2023-07-12	Mateusz Warowny	JAL-4199 Implement toString in BaseTask	commit \| commitdiff \| tree
2023-07-12	Mateusz Warowny	JAL-4199 Organise annotation task imports and fields	commit \| commitdiff \| tree
2023-07-12	Mateusz Warowny	JAL-4199 Set initial delay of task executor to 0	commit \| commitdiff \| tree
2023-07-12	Mateusz Warowny	JAL-4199 Remove commented out code	commit \| commitdiff \| tree
2023-07-12	Mateusz Warowny	JAL-4199 Perform null check for annotation sequenceRef	commit \| commitdiff \| tree
2023-07-12	Mateusz Warowny	JAL-4199 Patch task execution in action tests	commit \| commitdiff \| tree
2023-07-12	Mateusz Warowny	JAL-4199 Remove utility methods moved to other classes...	commit \| commitdiff \| tree
2023-07-12	Mateusz Warowny	Implement getRootDatasetSequence for SequenceI	commit \| commitdiff \| tree
2023-07-12	Mateusz Warowny	Implement getLastGraphGroup in for AnnotatedCollectionI	commit \| commitdiff \| tree
2023-07-12	Mateusz Warowny	JAL-4199 Schedule tasks for execution from MenuManager	commit \| commitdiff \| tree
2023-07-12	Mateusz Warowny	JAL-4199 Tidy up imports	commit \| commitdiff \| tree
2023-07-12	Mateusz Warowny	JAL-4199 Update gui handler for annotation tasks	commit \| commitdiff \| tree
2023-07-12	Mateusz Warowny	JAL-4199 Implement AlignCalcWorker adapter for annot...	commit \| commitdiff \| tree
2023-07-12	Mateusz Warowny	JAL-4199 Fix method name typo	commit \| commitdiff \| tree
2023-07-12	Mateusz Warowny	JAL-4199 Make all TaskEventListener methods default	commit \| commitdiff \| tree
2023-07-12	Mateusz Warowny	JAL-4199 Remove taskRestarted from task events	commit \| commitdiff \| tree
2023-07-12	Mateusz Warowny	JAL-4199 Allow multiple listeners in TaskEventSupport	commit \| commitdiff \| tree
2023-07-12	Mateusz Warowny	JAL-4199 Change actions to be task factories	commit \| commitdiff \| tree
2023-07-12	Mateusz Warowny	JAL-4199 Replace AbstractPollingTask with BaseTask	commit \| commitdiff \| tree
2023-06-22	Mateusz Warowny	JAL-4199 Introduce AlignmentAction tests	commit \| commitdiff \| tree
2023-06-22	Mateusz Warowny	JAL-4199 Initialize jobs and tasks with status CREATED	commit \| commitdiff \| tree
2023-06-19	Mateusz Warowny	JAL-4199 Test basic service parameter construction	commit \| commitdiff \| tree
2023-06-14	Mateusz Warowny	JAL-4199 Test URL settings and basic service discovery	commit \| commitdiff \| tree
2023-06-14	Mateusz Warowny	JAL-4199 Update slivka client	commit \| commitdiff \| tree
2023-04-24	Mateusz Warowny	JAL-4155 Replace unsafe casting to AlignmentPanel with...	commit \| commitdiff \| tree
2023-04-24	James Procter	JAL-4155 Viewport holds a reference to its AlignmentViewPane...	commit \| commitdiff \| tree
2023-03-28	Mateusz Warowny	JAL-4154 Remove not-bamboo flag from testGetVisibleWidth	commit \| commitdiff \| tree
2023-03-28	Mateusz Warowny	JAL-4154 Update AlignmentPanelTest to use new forArch...	commit \| commitdiff \| tree
2023-03-28	Mateusz Warowny	JAL-4154 Add Platform.forArch method.	commit \| commitdiff \| tree
2023-03-28	Mateusz Warowny	Merge branch 'JAL-4152-typed-singleton-provider' into...	commit \| commitdiff \| tree
2023-03-28	Mateusz Warowny	Merge branch 'development/Release_2_12_Branch' into...	commit \| commitdiff \| tree
2023-03-24	Mateusz Warowny	JAL-4152 Remove redundant casts from getInstance usages.	commit \| commitdiff \| tree
2023-03-22	Mateusz Warowny	JAL-4152 Make return type of getInstance a generic...	commit \| commitdiff \| tree
2023-03-17	Mateusz Warowny	JAL-4146 Fix SeqCanvasTest setup	commit \| commitdiff \| tree
2023-03-15	Mateusz Warowny	JAL-4146 Change occurrences of <br/> to <br>	commit \| commitdiff \| tree
2023-03-14	Mateusz Warowny	JAL-4146 Patch parseColourString test to expect null...	commit \| commitdiff \| tree
2023-03-01	Mateusz Warowny	JAL-4136 Replace uses of isBlank with isEmpty	commit \| commitdiff \| tree
2023-02-24	Mateusz Warowny	JAL-4135 replace stream.toString(Charset) calls with...	commit \| commitdiff \| tree
2023-02-22	Mateusz Warowny	JAL-4130 Replace Collection#forEach call with for loop	commit \| commitdiff \| tree
2023-02-22	Mateusz Warowny	JAL-4130 Avoid using thenComparing of the Comparator...	commit \| commitdiff \| tree
2023-02-17	Mateusz Warowny	JAL-4131 Replace usages of requireNonNullElse	commit \| commitdiff \| tree
2023-02-16	Mateusz Warowny	JAL-4130 Workaround the j2s issue with final variables...	commit \| commitdiff \| tree
2023-02-06	Mateusz Warowny	JAL-3878 Change Cache.log calls to Console	commit \| commitdiff \| tree
2023-02-06	Mateusz Warowny	Merge branch 'JAL-3878_ws-overhaul-3' into mmw/Release_2_12_...	commit \| commitdiff \| tree
2022-12-12	Mateusz Warowny	WIP	commit \| commitdiff \| tree
2022-04-26	Mateusz Warowny	JAL-3878 Implement RNA Sec. Str. Pred. discovery for...	commit \| commitdiff \| tree
2022-04-25	Mateusz Warowny	JAL-3878 log full worker repr in AlignCalcManager	commit \| commitdiff \| tree
2022-04-25	Mateusz Warowny	JAL-3878 Fix edit settings dialog prompting to discard...	commit \| commitdiff \| tree
2022-04-11	Mateusz Warowny	JAL-3878 Use slivka client's URL when building web...	commit \| commitdiff \| tree
2022-04-11	Mateusz Warowny	JAL-3878 Add conservation service discovery	commit \| commitdiff \| tree
2022-04-11	Mateusz Warowny	JAL-3878 Build interactive services menu	commit \| commitdiff \| tree
2022-04-11	Mateusz Warowny	JAL-3878 Implement prot. seq. an. discovery for slivka.	commit \| commitdiff \| tree
2022-04-11	Mateusz Warowny	JAL-3878 Implement gui elements for annotation servicces	commit \| commitdiff \| tree
2022-04-11	Mateusz Warowny	JAL-3878 Create SlivkaAnnotationWSClient	commit \| commitdiff \| tree
2022-04-11	Mateusz Warowny	JAL-3878 Add full name getter to ActionI	commit \| commitdiff \| tree
2022-04-11	Mateusz Warowny	JAL-3878 Log status changes in annotation task	commit \| commitdiff \| tree
2022-04-11	Mateusz Warowny	JAL-3878 Allow null value for action name	commit \| commitdiff \| tree
2022-04-07	Mateusz Warowny	JAL-3878 Add action and task for annotation services	commit \| commitdiff \| tree
2022-04-05	Mateusz Warowny	JAL-3878 Introduce IProgressIndicator#addProgressBar	commit \| commitdiff \| tree
2022-04-05	Mateusz Warowny	JAL-3878 Fix method name to fireTaskRestarted	commit \| commitdiff \| tree
2022-04-05	Mateusz Warowny	JAL-3878 Add char[] constructor to Sequence	commit \| commitdiff \| tree
2022-04-05	Mateusz Warowny	JAL-3878 Make BaseJob setters public so they can be...	commit \| commitdiff \| tree
2022-04-05	Mateusz Warowny	JAL-3878 Add fullName to BaseAction class which combines...	commit \| commitdiff \| tree
2022-04-05	Mateusz Warowny	JAL-3878 Move status precedence list to JobStatus class	commit \| commitdiff \| tree
2022-04-05	Mateusz Warowny	JAL-3878 Add uid to WS Tasks	commit \| commitdiff \| tree
2022-03-28	Mateusz Warowny	JAL-3878 Patch preferences window to use new discoverer.	commit \| commitdiff \| tree
2022-03-28	Mateusz Warowny	JAL-3878 Fix discoverer being stuck on BEGIN state...	commit \| commitdiff \| tree
2022-03-25	Mateusz Warowny	JAL-3878 Add slivka discoverer and menu to AlignFrame	commit \| commitdiff \| tree
2022-03-25	Mateusz Warowny	JAL-3878 Change align frame added to desktop to correct one	commit \| commitdiff \| tree
2022-03-25	Mateusz Warowny	JAL-3878 Wrap infoPanel updates with SwingUtilities...	commit \| commitdiff \| tree
2022-03-25	Mateusz Warowny	JAL-3878 Fix re-alignment-capable services detection.	commit \| commitdiff \| tree
2022-03-25	Mateusz Warowny	JAL-3878 Clear services list on reload.	commit \| commitdiff \| tree
2022-03-25	Mateusz Warowny	JAL-3878 Fix task status precedence calculation	commit \| commitdiff \| tree
2022-03-25	Mateusz Warowny	JAL-3878 Fix NullPointerExceptions caused by nulls...	commit \| commitdiff \| tree
2022-03-25	Mateusz Warowny	JAL3878 Implement slivka service discoverer	commit \| commitdiff \| tree
2022-03-25	Mateusz Warowny	JAL-3878 Move action name initialization to its own...	commit \| commitdiff \| tree
2022-03-25	Mateusz Warowny	JAL-3878 Create ws2 client for slivka services	commit \| commitdiff \| tree
2022-03-25	Mateusz Warowny	JAL-3878 Add builders to each service parameter class	commit \| commitdiff \| tree
2022-03-24	Mateusz Warowny	JAL-3878 Create service agnostic param datastore and set	commit \| commitdiff \| tree
2022-03-23	Mateusz Warowny	JAL-3878 Create beans for un/marshalling service parameters	commit \| commitdiff \| tree
2022-03-18	Mateusz Warowny	JAL-3878 Create abstract ws discoverer providing common...	commit \| commitdiff \| tree
2022-03-15	Mateusz Warowny	JAL-3878 Connect alignment services with gui	commit \| commitdiff \| tree
2022-03-14	Mateusz Warowny	JAL-3878 Move array index search to ArrayUtils	commit \| commitdiff \| tree
2022-03-11	Mateusz Warowny	JAL-3878 Create web service menu manager.	commit \| commitdiff \| tree
2022-03-11	Mateusz Warowny	JAL-3878 Add hasPresets and hasParameters utility methods...	commit \| commitdiff \| tree
2022-03-09	Mateusz Warowny	JAL-3878 Add WebServiceProviderI - a view of services.	commit \| commitdiff \| tree
2022-03-09	Mateusz Warowny	JAL-3878 Improve performance of gap sequence construction.	commit \| commitdiff \| tree
2022-03-08	Mateusz Warowny	JAL-3878 Add web service reference to actions.	commit \| commitdiff \| tree
2022-03-04	Mateusz Warowny	JAL-3878 Change visibility of WebService methods to...	commit \| commitdiff \| tree
2022-03-03	Mateusz Warowny	JAL-3878 Create alignment service "backend" classes	commit \| commitdiff \| tree
2022-03-03	Mateusz Warowny	JAL-3878 Remove unused JobStatus methods	commit \| commitdiff \| tree
2022-03-03	Mateusz Warowny	JAL-3878 Create abstract base classes for non-interactive...	commit \| commitdiff \| tree
2022-03-02	Mateusz Warowny	JAL-3878 Fix typo in method name (getAlignemnt)	commit \| commitdiff \| tree
2022-03-02	Mateusz Warowny	JAL-3878 Add serviceExecutor to AlignmentViewport.	commit \| commitdiff \| tree
2022-02-28	Mateusz Warowny	JAL-3878 Separate server job handle from task's sub...	commit \| commitdiff \| tree
2022-02-18	Mateusz Warowny	JAL-3878 Provide javadoc for WebServiceClientI interface	commit \| commitdiff \| tree
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