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Merge branch 'features/JAL-3858_PAEsInProjects' into develop
2023-02-24 James ProcterMerge branch 'features/JAL-3858_PAEsInProjects' into...
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2023-02-24 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-629' into...
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2023-02-23 James ProcterJAL-3858 new MatrixType JAX-RI POJO
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2023-02-23 James ProcterJAL-4133 update validChar width when font is changed...
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2023-02-22 James ProcterJAL-4133 store/restore alignment view’s charWidth and...
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2023-02-22 James ProcterJAL-3858 persist PAE matrix (only so far) as serialised...
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2023-02-22 James ProcterJAL-1551 source formatting
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2023-02-22 James ProcterJAL-3858 simple test for PAE matrix recovery
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2023-02-22 James ProcterJAL-3858 construct a PAE direct from float array
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2023-02-22 James ProcterJAL-629 make sure we show GUI when not driven programmatically
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2023-02-22 James ProcterJAL-4095 slightly better threshold setting and todos...
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2023-02-22 James ProcterJAL-4095 magic fill behaviour is PAE specific
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2023-02-22 James ProcterJAL-3858 JAL-2381 allow different linear shading schemes...
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2023-02-22 James ProcterJAL-4027 JAL-3858 rename CUSTOM_RENDERER to CONTACT_MATRIX...
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2023-02-16 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-629' into...
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2023-02-16 James ProcterJAL-1713 don’t close an automatically created overview...
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2023-02-15 James ProcterMerge branch 'develop' into feature/JAL-1713_overviewInProject
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2023-02-15 James ProcterPassing test for JAL-4127 failing on the JAL-1713 branch
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2023-02-15 James ProcterJAL-4090 move 2.11.3 series release notes to 2.11.3...
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2023-02-13 James ProcterMerge branch 'develop' into feature/JAL-1713_overviewInProject
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2023-02-10 James ProcterJAL-3077 broken conflict resolve resulted in failing...
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2023-02-10 James ProcterFix for JAL-4126 - don’t automatically create a threshold...
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2023-02-10 James ProcterJAL-4126 comment out closeAll - so we can visually...
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2023-02-10 James ProcterJAL-4126 failing test - colour scheme appears to be...
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2023-02-03 James ProcterJAL-1551 remove temp file in src
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2023-02-03 James ProcterMerge branch 'develop' into features/r2_11_2_alphafold...
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2023-01-31 James ProcterJAL-1713 update from Jalview 2.11.3 develop
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2023-01-25 James ProcterJAL-4116 relegate the failed to promote warning to...
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2023-01-25 James ProcterMerge branch 'new_feature/JAL-4019_ambiguous_base_coloursche...
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2023-01-24 James ProcterJAL-4090 Release 2.11.3.0 release notes and version...
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2023-01-24 James ProcterMerge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL...
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2023-01-24 James ProcterJAL-629 hacked in --tempfac-shading - hardcoded to...
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2023-01-24 James ProcterJAL-629 suggest not breaking out of the structure processing...
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2023-01-24 James ProcterJAL-629 need to delay call to AlignFile.parse() if...
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2023-01-24 James ProcterJAL-629 don’t carry on Jalview.main if we’ve already...
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2023-01-24 James ProcterJAL-629 don’t trash user’s system property file when...
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2023-01-24 James ProcterJAL-629 don’t complain for Unary args
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2023-01-24 James ProcterJAL-629 labelled breaks are frowned upon by everyone
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2023-01-24 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...
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2023-01-24 James ProcterMerge branch 'develop' (JAL-4102 2.11.2.6 patch release...
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2023-01-23 James ProcterJAL-4104 JAL-4102 update help docs with script to add...
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2015-06-05 Jim ProcterJAL-653 refactor sequence interface to separate concrete...
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2015-06-05 Jim ProcterJAL-845 jim @mungo: should this be in a package local...
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2015-06-05 Jim ProcterJAL-1551 formatting
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2015-06-05 Jim ProcterJAL-653 set the warningMessage for the file source...
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2015-06-05 Jim ProcterJAL-653 GFF attributes parsing mechanism, with first...
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2015-06-05 Jim ProcterJAL-653 trim initial tab in sequence feature ATTRIBUTES
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2015-06-05 Jim ProcterJAL-653 allow dummy sequences to be created if a sequence...
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2015-06-05 Jim ProcterJAL-1551 formatting
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2015-06-05 Jim ProcterJAL-653 convenience method to resolve strand attribute...
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2015-06-05 Jim ProcterJAL-1115 JAL-653 partial introduction of List interface...
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2015-06-05 Jim ProcterJAL-653 JAL-966 TODO and avoid NPE when desktop instance...
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2015-06-05 Jim ProcterJAL-653 codon frames go on the dataset
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2015-06-05 Jim ProcterJAL-653 refactored exonerate full output to separate...
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2015-06-05 Jim ProcterJAL-653 JAL-845 test to check exonerate cDNA-Protein...
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2015-06-05 Jim ProcterJAL-1482 JAL-653 refactor feature file import code...
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2015-06-05 Jim ProcterJAL-1482 refactor setTableData to more sensible name...
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2015-06-05 Jim ProcterJAL-1551 formatting
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2015-05-11 James ProcterJAL-1690 make splitframe enabled by default
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