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2021-09-14	Jim Procter	JAL-3829 JAL-3855 ignore case when detecting alphafold ID	commit \| commitdiff \| tree
2021-09-14	Jim Procter	JAL-3855 detect an alphafold model and import its temperatur...	commit \| commitdiff \| tree
2021-09-14	Jim Procter	JAL-3829 move mock query and responses to files	commit \| commitdiff \| tree
2021-09-14	Jim Procter	Merge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons	commit \| commitdiff \| tree
2021-09-14	Jim Procter	Merge branch 'feature/JAL-2422ChimeraX' into develop	commit \| commitdiff \| tree
2021-09-14	Jim Procter	JAL-3829 3d-beacons doesn’t work as a sequence source...	commit \| commitdiff \| tree
2021-09-14	Jim Procter	JAL-3829 avoid sending rubbish to PDBe search api	commit \| commitdiff \| tree
2021-09-14	Jim Procter	JAL-3829 some providers don’t provide model quality...	commit \| commitdiff \| tree
2021-09-14	Jim Procter	JAL-3829 allow multiple URL mocks and include P01308...	commit \| commitdiff \| tree
2021-09-13	Jim Procter	Merge branch 'releases/Release_2_11_2_Branch' into...	commit \| commitdiff \| tree
2021-09-13	Jim Procter	Merge branch 'features/r2_11_2/JAL-3829_3dbeacons'...	commit \| commitdiff \| tree
2021-09-13	Jim Procter	Merge branch 'features/r2_11_2/JAL-3829_3dbeacons'...	commit \| commitdiff \| tree
2021-09-13	Jim Procter	JAL-3829 ensure unmock the FTS PDB and TDB clients...	commit \| commitdiff \| tree
2021-09-13	Jim Procter	JAL-3829 minimal test of additional TDB filters - not...	commit \| commitdiff \| tree
2021-09-13	Jim Procter	JAL-3829 select single best TDB structure and select...	commit \| commitdiff \| tree
2021-09-12	Jim Procter	JAL-3829 JalviewJS workarounds/patches	commit \| commitdiff \| tree
2021-09-12	Jim Procter	JAL-3829 upgrade Jmol to 14.31.53, SwingJS-JSMol to...	commit \| commitdiff \| tree
2021-09-11	Jim Procter	JAL-3829 ensure tests use mocked service - proper exception...	commit \| commitdiff \| tree
2021-09-11	Jim Procter	JAL-3829 patch failing tests and todo for future	commit \| commitdiff \| tree
2021-09-10	Jim Procter	JAL-3829 provide both PDBe queries and 3D-Beacons queries...	commit \| commitdiff \| tree
2021-09-10	Jim Procter	JAL-3829 insert title for structures from PDBe	commit \| commitdiff \| tree
2021-09-10	Jim Procter	JAL-3829 update for v1.0 3d-beacons api spec	commit \| commitdiff \| tree
2021-09-10	Jim Procter	JAL-3829 point at production 3d-beacons url	commit \| commitdiff \| tree
2021-09-08	Jim Procter	JAL-3829 refactor and JAL-3391 JAL-2935 first stab...	commit \| commitdiff \| tree
2021-09-08	Jim Procter	JAL-3829 allow client-side selection of structures...	commit \| commitdiff \| tree
2021-09-08	Jim Procter	JAL-3829 JAL-3868 TODO	commit \| commitdiff \| tree
2021-09-08	Jim Procter	JAL-3829 formatting	commit \| commitdiff \| tree
2021-09-08	Jim Procter	JAL-3829 integration test verifying mock response is...	commit \| commitdiff \| tree
2021-09-06	Jim Procter	JAL-3829 work in progress - look up additional metadata...	commit \| commitdiff \| tree
2021-09-06	Jim Procter	JAL-3829 look up column in FTS data	commit \| commitdiff \| tree
2021-09-06	Jim Procter	JAL-3829 mocking for PDBFTS for related query to UniprotFTS...	commit \| commitdiff \| tree
2021-09-06	Jim Procter	JAL-3829 pull out structure chooser query source tests...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3829 JAL-3865 test structure chooser queries to...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3829 use sequence dependent constructor for structure...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3829 mocking for testing 3D-Beacons FTS endpoint	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3863 promote non-canonical version of dbref to...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3829 comments on the 3D structure chooser’s initialisati...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3865 isolate PDB and TDB clients and last query...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3863 passing test to verify a uniprot accession...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3829 JAL-3865 StructureChooserQuerySource implementation...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3855 don’t need to query Alphafold2 repository...	commit \| commitdiff \| tree
2021-09-03	Jim Procter	JAL-3829 refactored FilterOption provider to the StructureCh...	commit \| commitdiff \| tree
2021-09-02	Jim Procter	Merge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons	commit \| commitdiff \| tree
2021-09-02	Jim Procter	Merge branch 'cherry-pick/r2_11_2_JAL-3509' into develop	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3863 fix test and note about fragility	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3863 add canonical DBRefEntry flag to Jalview project	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 generalised Alphafold retrieval mechanism...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3863 mark first accession retrieved from Uniprot...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 Structure chooser specific FTS interface and...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	Merge branch 'feature/JAL-3855_ebi_alphafold_import...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 3d-beacons structure chooser logic (not yet...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 pulled out more of the FTS dependent parts...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 updated tests for 3db fetcher’s working FTS...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 proof in principle 3d-beacons sequence fetcher...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 3d-beacons has a custom alignment retrieval...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3674 Jmol seems to sometimes return a null for...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 fixed up the 3d-beacons data columns definitions...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 JAL-2176 - TODO re unused argument in FTSRestClientI	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 tidying up PDBFTSRestClient test responses...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 Javadoc for FTSColumnPreferences	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 pushed the PDBFTSClient specific code to new...	commit \| commitdiff \| tree
2021-08-30	Jim Procter	JAL-3829 removed unneeded attribute in FTS core	commit \| commitdiff \| tree
2021-07-27	Jim Procter	JAL-3674 Jmol seems to sometimes return a null for...	commit \| commitdiff \| tree
2021-07-27	Jim Procter	JAL-3855 suppress NPE when trying to retrieve SIFTS...	commit \| commitdiff \| tree
2021-07-27	Jim Procter	JAL-3855 ALPHAFOLD database source based on the PDB...	commit \| commitdiff \| tree
2021-07-27	Jim Procter	JAL-3855 check if an alpha fold ID and retrieve using...	commit \| commitdiff \| tree
2021-07-27	Jim Procter	JAL-3855 check for existence of an alpha fold model...	commit \| commitdiff \| tree
2021-07-27	Jim Procter	JAL-3855 convenience method to check a URL will return...	commit \| commitdiff \| tree
2014-10-23	Jim Procter	Merge branch 'hotfix/JAL-1521' into Release_2_8_1_Branch	commit \| commitdiff \| tree
2014-10-23	Jim Procter	JAL-1521 patch is to remove xerces from classpath....	commit \| commitdiff \| tree
2014-10-23	Jim Procter	JAL-1521 test to check registry is returning sources	commit \| commitdiff \| tree
2014-10-23	Jim Procter	Merge branch 'Release_2_8_1_Branch'	commit \| commitdiff \| tree
2014-10-23	Jim Procter	patch fixes JAL-1558	commit \| commitdiff \| tree
2014-10-23	Jim Procter	Merge branch 'Release_2_8_1_Branch'	commit \| commitdiff \| tree
2014-10-23	Jim Procter	JAL-1503 tag 2.8.1b1 hotfix - last in 2.8.1 line	commit \| commitdiff \| tree
2014-10-21	Jim Procter	Merge branch 'forpush/JAL-674_dssp' into develop	commit \| commitdiff \| tree
2014-10-21	Jim Procter	JAL-674 check for null vector before ...	commit \| commitdiff \| tree
2014-10-21	Jim Procter	Merge branch 'patch_sjf4j_typo' into develop	commit \| commitdiff \| tree
2014-10-21	Jim Procter	JAL-1216 update varna dependency string in jalviewLite...	commit \| commitdiff \| tree
2014-10-21	Jim Procter	Merge branch 'patch_sjf4j_typo' into develop	commit \| commitdiff \| tree
2014-10-21	Jim Procter	JWS-59 JAL-1216 patch broken InstallAnywhere build	commit \| commitdiff \| tree
2014-10-21	Jim Procter	Merge branch 'forpush/JAL-674_dssp' into develop	commit \| commitdiff \| tree
2014-10-21	Jim Procter	JAL-1551 reinstate missing import	commit \| commitdiff \| tree
2014-10-21	Jim Procter	JAL-674 initial implementation - only need to extract...	commit \| commitdiff \| tree
2014-10-21	Jim Procter	JAL-1551 crlf	commit \| commitdiff \| tree
2014-10-21	Jim Procter	JAL-674 JAL-1551 imports dropped during merge	commit \| commitdiff \| tree
2014-10-21	Jim Procter	JAL-1216 update to VARNA 3.91	commit \| commitdiff \| tree
2014-10-21	Jim Procter	JAL-674 remove any spurious PDBEntrys generated by...	commit \| commitdiff \| tree
2014-10-21	Jim Procter	JAL-674 methods and test for PDB derived annotation...	commit \| commitdiff \| tree
2014-10-21	Jim Procter	JAL-674 store ID in MCview.PDBfile calcId string, not...	commit \| commitdiff \| tree
2014-10-21	Jim Procter	JAL-674 don't create multiple secondary structure lines...	commit \| commitdiff \| tree
2014-10-21	Jim Procter	JAL-674 test for the test for presence of annotation...	commit \| commitdiff \| tree
2014-10-21	Jim Procter	JAL-674 test for presence of annotation derived from...	commit \| commitdiff \| tree
2014-10-21	Jim Procter	JAL-1551 formatting	commit \| commitdiff \| tree
2014-10-21	Jim Procter	JAL-1551 formatting	commit \| commitdiff \| tree
2014-10-21	Jim Procter	JAL-674 patch for duplicate row bug	commit \| commitdiff \| tree
2014-10-21	Jim Procter	JAL-674 test for duplicate alignment annotation rows...	commit \| commitdiff \| tree
2014-10-21	Jim Procter	JAL-1551 formatting	commit \| commitdiff \| tree
2014-10-21	Jim Procter	JAL-674 patch to ensure existing annotation is properly...	commit \| commitdiff \| tree
2014-10-21	Jim Procter	JAL-674 test to ensure sequence and annotation on sequence...	commit \| commitdiff \| tree
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