| 2015-10-09 |
gmungoc | JAL-1499 output !Label lines for "MEGA Label" alignment...
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commit | commitdiff | tree |
| 2015-10-08 |
gmungoc | JAL-1499 consistent use of FileFormatException
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commit | commitdiff | tree |
| 2015-10-08 |
gmungoc | JAL-1499 convert unsupported gap character to '-'
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commit | commitdiff | tree |
| 2015-10-07 |
gmungoc | JAL-1499 parsing !Label statements to AlignmentAnnotation
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commit | commitdiff | tree |
| 2015-10-07 |
gmungoc | JAL-1499 test code refactor / tidy
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commit | commitdiff | tree |
| 2015-10-07 |
gmungoc | JAL-1499 refactored processGeneOrDomain, expanded test
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commit | commitdiff | tree |
| 2015-10-07 |
gmungoc | JAL-1499 corrected domainend parsing, add gene name...
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commit | commitdiff | tree |
| 2015-10-06 |
gmungoc | JAL-1499 improved parsing of !Domain and !Gene including
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commit | commitdiff | tree |
| 2015-10-01 |
gmungoc | JAL-1499 parse !Gene statements to SequenceFeature
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commit | commitdiff | tree |
| 2015-10-01 |
gmungoc | JAL-1499 tests with gaps; NSites = width
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commit | commitdiff | tree |
| 2015-10-01 |
gmungoc | JAL-1499 parse files with position number comments...
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commit | commitdiff | tree |
| 2015-10-01 |
gmungoc | JAL-1499 replace identity symbols when parsing
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commit | commitdiff | tree |
| 2015-10-01 |
gmungoc | JAL-1499 write position numbers at end of each line...
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commit | commitdiff | tree |
| 2015-10-01 |
gmungoc | JAL-1499 tweak output format for Description
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commit | commitdiff | tree |
| 2015-09-30 |
gmungoc | JAL-1499 initial tests working, can export to / import...
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commit | commitdiff | tree |
| 2015-09-29 |
gmungoc | JAL-1499 first pass update of parsing and tests, more...
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commit | commitdiff | tree |
| 2015-09-28 |
gmungoc | JAL-1499 MEGA format, JAL-1421 List<String> url links
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commit | commitdiff | tree |
| 2015-09-28 |
gmungoc | JAL-1499 "MEGA" text label
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commit | commitdiff | tree |
| 2015-09-28 |
gmungoc | JAL-1909 repaint complementary alignment panel after...
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commit | commitdiff | tree |
| 2015-09-25 |
gmungoc | JAL-1859 try hoverDelay of 0.1s in Jmol for more responsive...
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commit | commitdiff | tree |
| 2015-09-25 |
gmungoc | JAL-1815 restore split frame geometry correctly including...
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commit | commitdiff | tree |
| 2015-09-24 |
gmungoc | JAL-1905 parse url including & correctly
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commit | commitdiff | tree |
| 2015-09-24 |
gmungoc | JAL-1904 parse feature file colours on to alignment...
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commit | commitdiff | tree |
| 2015-09-22 |
gmungoc | JAL-1894 release notes updated
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commit | commitdiff | tree |
| 2015-09-22 |
gmungoc | JAL-1424 tidied output
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commit | commitdiff | tree |
| 2015-09-22 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2015-09-22 |
gmungoc | JAL-1859 adding "set hoverDelay 0.001;" to Jmol startup...
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commit | commitdiff | tree |
| 2015-09-21 |
gmungoc | JAL-1892 duplicate entry removed
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commit | commitdiff | tree |
| 2015-09-21 |
gmungoc | JAL-1799 update height of annotation labels to match...
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commit | commitdiff | tree |
| 2015-09-21 |
gmungoc | JAL-1892 Spanish additions for Jalview 2.9
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commit | commitdiff | tree |
| 2015-09-21 |
gmungoc | JAL-1152 set initial state of show alignment/sequence...
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commit | commitdiff | tree |
| 2015-09-21 |
gmungoc | JAL-1152 small change to match revised annotation sorting...
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commit | commitdiff | tree |
| 2015-09-21 |
gmungoc | JAL-1619 obsolete help removed
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commit | commitdiff | tree |
| 2015-09-18 |
gmungoc | JAL-1270 disable test as not really a test and goes...
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commit | commitdiff | tree |
| 2015-09-18 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2015-09-18 |
gmungoc | JAL-1805 typo corrected
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commit | commitdiff | tree |
| 2015-09-18 |
gmungoc | JAL-1788 typos corrected
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commit | commitdiff | tree |
| 2015-09-18 |
gmungoc | JAL-1788 broken href fixed
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commit | commitdiff | tree |
| 2015-09-18 |
gmungoc | JAL-1859 reinstated full path to file option (for local...
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commit | commitdiff | tree |
| 2015-09-18 |
gmungoc | JAL-1424 Ant task to report missing language bundle...
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commit | commitdiff | tree |
| 2015-09-16 |
gmungoc | JAL-1882 variable renamed to avoid confusion with member...
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commit | commitdiff | tree |
| 2015-09-16 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2015-09-16 |
gmungoc | JAL-1885 small fix to isVersionStringLaterThan plus...
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commit | commitdiff | tree |
| 2015-09-16 |
gmungoc | JAL-1684 typo correction
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commit | commitdiff | tree |
| 2015-09-16 |
gmungoc | JAL-1859 removed temporary test copy of pdb file
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commit | commitdiff | tree |
| 2015-09-16 |
gmungoc | JAL-1859 refactor duplicated code to new HttpUtils...
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commit | commitdiff | tree |
| 2015-09-16 |
gmungoc | JAL-1859 code tidy, remove 'absolute URL' option
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commit | commitdiff | tree |
| 2015-09-16 |
gmungoc | JAL-1859 working variable to aid inspection in debugger
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commit | commitdiff | tree |
| 2015-09-16 |
gmungoc | JAL-1859 try 1gaq.txt in /lang so it is in the built jar
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commit | commitdiff | tree |
| 2015-09-16 |
gmungoc | JAL-1859 debug logging removed
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commit | commitdiff | tree |
| 2015-09-16 |
gmungoc | JAL-1859 revert to resolving full path to PDB file
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commit | commitdiff | tree |
| 2015-09-16 |
gmungoc | JAL-1859 refactor addProtocol, setProtocolState as...
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commit | commitdiff | tree |
| 2015-09-16 |
gmungoc | JAL-1859 temporary debug output
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commit | commitdiff | tree |
| 2015-09-15 |
gmungoc | JAL-1859 use unresolved PDB filename
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commit | commitdiff | tree |
| 2015-09-15 |
gmungoc | JAL-1859 strip file name from applet documentbase
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commit | commitdiff | tree |
| 2015-09-15 |
gmungoc | JAL-1859 refactoring / debugging added
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commit | commitdiff | tree |
| 2015-09-14 |
gmungoc | JAL-1865 fixed so initial state of annotation sort...
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commit | commitdiff | tree |
| 2015-09-14 |
gmungoc | JAL-1851 add retrieved sequence's start (-1) to match...
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commit | commitdiff | tree |
| 2015-09-14 |
gmungoc | JAL-1880 updated mapping tests to ensure they handle...
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commit | commitdiff | tree |
| 2015-09-14 |
gmungoc | JAL-1270 test added for separatorListToArray
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commit | commitdiff | tree |
| 2015-09-14 |
gmungoc | JAL-1880 handle sequence offsets properly when mapping...
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commit | commitdiff | tree |
| 2015-09-14 |
gmungoc | JAL-1684 align added alignment to match original in...
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commit | commitdiff | tree |
| 2015-09-14 |
gmungoc | JAL-1684 align added alignment to match original in...
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commit | commitdiff | tree |
| 2015-09-14 |
gmungoc | JAL-1684 ensure cDNA placed above protein in SplitFrame
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commit | commitdiff | tree |
| 2015-09-09 |
gmungoc | JAL-857 debug=true for Jmol example diagnosis
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commit | commitdiff | tree |
| 2015-09-09 |
gmungoc | JAL-857 added debug output to track down document base...
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commit | commitdiff | tree |
| 2015-09-09 |
gmungoc | JAL-1619 update applet.currentAlignFrame on any menu...
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commit | commitdiff | tree |
| 2015-09-09 |
gmungoc | JAL-1619 'align protein as cDNA' now leaves unmapped...
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commit | commitdiff | tree |
| 2015-09-08 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2015-09-08 |
gmungoc | JAL-1859 debug output of pdb mappings (mine and SSMs)
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commit | commitdiff | tree |
| 2015-09-08 |
gmungoc | JAL-1859 reverted to signed JalviewApplet.jar!
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commit | commitdiff | tree |
| 2015-09-08 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2015-09-08 |
gmungoc | JAL-1859 Jmol applet black background; fix _jvmols...
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commit | commitdiff | tree |
| 2015-09-07 |
gmungoc | JAL-1859 Jmol linked applet updated to use Jmol2.js
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commit | commitdiff | tree |
| 2015-09-07 |
gmungoc | JAL-1636 translate stop codon as '*', mouseover * as...
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commit | commitdiff | tree |
| 2015-09-07 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2015-09-07 |
gmungoc | JAL-1152 check 'autocalculated' not 'null sequenceRef...
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commit | commitdiff | tree |
| 2015-09-04 |
gmungoc | JAL-1859 jmolFindTarget not JmolFindTarget
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commit | commitdiff | tree |
| 2015-09-04 |
gmungoc | JAL-1859 embedded Jmol applet example updated for Jmol...
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commit | commitdiff | tree |
| 2015-09-03 |
gmungoc | JAL-1859 removed unneeded dependency on package not...
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commit | commitdiff | tree |
| 2015-09-03 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2015-09-03 |
gmungoc | JAL-1690 scaleProteinAsCdna new optional attribute...
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commit | commitdiff | tree |
| 2015-09-03 |
gmungoc | JAL-1828 lookup table to convert MSE to MET when parsing...
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commit | commitdiff | tree |
| 2015-09-03 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2015-09-02 |
gmungoc | JAL-1544 spelling
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commit | commitdiff | tree |
| 2015-09-02 |
gmungoc | JAL-1355 User error text externalised to message bundle
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commit | commitdiff | tree |
| 2015-09-02 |
gmungoc | JAL-1768 set initial 'enabled' state for id width label...
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commit | commitdiff | tree |
| 2015-09-02 |
gmungoc | JAL-1264 test made i18n robust
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commit | commitdiff | tree |
| 2015-09-02 |
gmungoc | JAL-1768 enable fixed width output when auto-width...
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commit | commitdiff | tree |
| 2015-09-02 |
gmungoc | JAL-1843 fixed input/add from textbox; added @Override...
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commit | commitdiff | tree |
| 2015-09-02 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2015-09-02 |
gmungoc | JAL-1619 additions, standardised menu item symbols
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commit | commitdiff | tree |
| 2015-09-02 |
gmungoc | JAL-1681 mention of cDNA consensus added
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commit | commitdiff | tree |
| 2015-09-02 |
gmungoc | JAL-1673 new test to verify transferRESNUMFeatures()
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commit | commitdiff | tree |
| 2015-09-02 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2015-09-01 |
gmungoc | JAL-1693 split frame opened for get xrefs, translate...
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commit | commitdiff | tree |
| 2015-09-01 |
gmungoc | JAL-1672 additional assertions added
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commit | commitdiff | tree |
| 2015-09-01 |
gmungoc | JAL-1355 user error message text externalised
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commit | commitdiff | tree |
| 2015-08-28 |
gmungoc | JAL-1836 temporary workaround for negative resNumIns...
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commit | commitdiff | tree |
| 2015-08-27 |
gmungoc | JAL-1270 comments added regarding required remote service
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commit | commitdiff | tree |
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