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JAL-3210 merge conflict tidying
2019-03-13 gmungocJAL-3210 merge conflict tidying
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2019-03-13 gmungocJAL-1889 hack to ensure endRes is computed in setUp
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2019-03-13 gmungocJAL-3141 fix up merge artefact so BackupFilesTest passes
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2019-03-13 gmungocMerge branch 'develop' into trialMerge
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2019-03-12 gmungocJAL-1270 missing 'alwaysRun=true' added to setup/teardown
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2019-03-12 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into...
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2019-03-12 gmungocJAL-3127 check for null viewport
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2019-03-11 gmungocMerge branch 'develop' into merge/JAL-3127
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2019-03-11 gmungocJAL-1270 JAL-2416 JAL-2839 set alwaysRun=true in test...
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2019-03-11 gmungocJAL-3127 fix faulty merge
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2019-03-11 gmungocMerge branch 'develop' into merge/JAL-3127
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2019-03-11 gmungocMerge branch 'feature/JAL-2250colourAllGroups' into...
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2019-03-11 gmungocJAL-3201 restore group colours correctly from project
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2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into...
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2019-03-11 gmungocJAL-3206 strict above/below threshold test restored
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2019-03-11 gmungocMerge branch 'bug/JAL-3075' into develop
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2019-03-08 gmungocJAL-3193 defensive trim of URL read from properties...
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2019-03-08 gmungocJAL-2903 typos fixed
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2019-03-08 gmungocJAL-3075 update column selection on mouse up after...
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2019-03-07 gmungocMerge branch 'feature/JAL-3180colourAnnotationMenu...
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2019-03-07 gmungocJAL-2250 default Apply Colour to All Groups selected
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2019-03-07 gmungocJAL-2717 JAL-2360 belated unit tests for ColourMenuHelper
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2019-03-07 gmungocJAL-2717 corrected i18n of colour scheme names
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2019-03-07 gmungocMerge branch 'feature/JAL-3205symmetricCalc' into develop
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2019-03-07 gmungocJAL-3035 removed spring libraries as only used for...
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2019-03-06 gmungocMerge branch 'tasks/JAL-3035_remove_dasobert_dependency...
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2019-03-06 gmungocJAL-3035 restored erroneous deletion
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2019-03-06 gmungocMerge branch 'tasks/JAL-3035_remove_dasobert_dependency...
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2019-03-06 gmungocJAL-3035 more das bits removed
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2019-03-05 gmungocMerge branch 'bug/JAL-3201groupClustal' into develop
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2019-03-05 gmungocMerge remote-tracking branch 'origin/features/JAL-2620altern...
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2019-03-05 gmungocMerge branch 'bug/JAL-2621' into develop
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2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-3141_Messages_d...
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2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-2839findWithHid...
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2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-914multipleHelp...
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2019-03-05 gmungocMerge remote-tracking branch 'origin/features/JAL-2814ftsHel...
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2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-3002fastPaintWr...
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2019-03-05 gmungocJAL-3049 JAL-3032 tidy/i18n code, remove redundant...
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2019-03-05 gmungocJAL-3049 redo (part of) commit 92bc328
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2019-03-05 gmungocJAL-3054 small y-overlap of tooltip and cell leads...
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2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-3049colourCellT...
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2019-03-05 gmungocJAL-3205 added a delta parameter to Matrix.equals()
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2019-03-04 gmungocMerge branch 'bug/JAL-3072scrollThread' into merge...
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2019-03-04 gmungocMerge remote-tracking branch 'origin/bug/JAL-3082selectRegex...
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2019-03-04 gmungocJAL-3206 avoid divide by zero when threshold is graphMin...
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2019-03-04 gmungocMerge branch 'bug/JAL-3099alignmentVisibleWidth' into...
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2019-03-04 gmungocMerge remote-tracking branch 'origin/tasks/JAL-3035_remove_d...
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2019-03-04 gmungocMerge branch 'bug/JAL-3120restoreFeatureColour' into...
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2019-03-04 gmungocJAL-3205 worked examples in unit test for symmetric...
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2019-03-03 gmungocJAL-3205 one more unit test case
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2019-03-03 gmungocJAL-3205 faster calculation with symmetric score matrix
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2019-03-01 gmungocMerge branch 'bug/JAL-2791exportFilteredFeature' into...
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2019-03-01 gmungocMerge branch 'feature/JAL-3093wrappedModeTooltips'...
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2019-03-01 gmungocJAL-3093 unit test adapts to actual number of annotation...
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2019-03-01 gmungocMerge branch 'feature/JAL-3093wrappedModeTooltips'...
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2019-03-01 gmungocMerge branch 'feature/JAL-1244stretchStatusMsg' into...
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2019-03-01 gmungocMerge branch 'bug/JAL-3139colocatedFeatures' into develop
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2019-03-01 gmungocJAL-3154 disable reorder columns before adding to viewport
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2019-03-01 gmungocMerge branch 'bug/JAL-3154tableColumnDrag' into develop
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2019-03-01 gmungocMerge branch 'bug/JAL-3161annotationTooltipRange' into...
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2019-03-01 gmungocMerge branch 'bug/JAL-3158selectionBroadcasts' into...
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2019-03-01 gmungocMerge branch 'bug/JAL-3164complementOverview' into...
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2019-03-01 gmungocMerge branch 'merge/JAL-3140' into develop
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2019-03-01 gmungocJAL-3140 update for change to SequenceI api
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2019-03-01 gmungocMerge branch 'feature/intervalStoreJ' into merge/JAL...
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2019-03-01 gmungocJAL-3140 reduced coupling to intervalstore.jar
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2019-02-28 gmungocJAL-3140 confine intervalstore imports to jalview.datamodel...
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2019-02-28 gmungocMerge branch 'bug/JAL-2420revealAllMenu' into develop
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2019-02-28 gmungocMerge branch 'bug/JAL-3166npeAllRowsHidden' into develop
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2019-02-28 gmungocMerge branch 'feature/JAL-3169cancelOverwrite' into...
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2019-02-28 gmungocMerge branch 'feature/JAL-3143ensemblJSON' into merge...
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2019-02-28 gmungocMerge remote-tracking branch 'origin/feature/JAL-3141_backup...
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2019-02-28 gmungocJAL-3032 any url parameter not "j2s..." taken as Jalview...
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2019-02-27 gmungocJAL-2527 default Overview 'hide hidden' i.e. WYSIWYG
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2019-02-27 gmungocJAL-2527 default Overview 'hide hidden' i.e. WYSIWYG
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2019-02-27 gmungocJAL-3202 reduced scope of rendering flags
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2019-02-27 gmungocJAL-3202 discard zero percentages in extracted profile
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2019-02-26 gmungocJAL-3201 JAL-2386 don't pre-select 'apply to all groups'
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2019-02-26 gmungocJAL-3201 group colour schemes distinct instances
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2019-02-25 gmungocJAL-3032 Jalview (as JS) parse query params to main...
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2019-02-25 gmungocJAL-3032 JalviewJS2 converts url query parameters to...
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2019-02-25 gmungocJAL-3200 fast lookup of DSSP3 notation
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2019-02-24 gmungocJAL-3198 don't recalculate group conservation for Id...
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2019-02-24 gmungocJAL-3198 SequenceGroup 'bulk constructor' without duplicates...
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2019-02-22 gmungocJAL-2915 don't recalculate Overview on scroll to position...
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2019-02-22 gmungocJAL-2738 don't set AF as feature score
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2019-02-12 gmungocJAL-3032 default Autosearch to off for JalviewJS
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2019-02-07 gmungocJAL-3140 updated to latest intervalstore.jar
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2019-02-05 gmungocJAL-3032 check enough sequences selected on construction
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2019-02-05 gmungocTest (passes!) for dialog message truncation
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2019-02-05 gmungocJAL-3048 JS-compatible confirm dialog on delete all
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2019-02-04 gmungocMerge branch 'feature/JAL-3143ensemblJSON' into Jalview...
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2019-02-04 gmungocJAL-3143 update unit test for ID -> id change
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2019-01-30 gmungocMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of
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2019-01-30 gmungocJAL-3144 don't change comma to semi-colon if not requested!
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2019-01-30 gmungocJAL-3056 no export as BioJS in JalviewJS
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2019-01-29 gmungocMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of...
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2019-01-29 gmungocMerge branch 'feature/JAL-3143ensemblJSON' into trialMerge
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2019-01-29 gmungocJAL-3143 format alleles array for feature description
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2019-01-28 gmungocJAL-3032 revert change to tooltip StringBuilder length
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