| 2022-11-13 |
Ben Soares | JAL-4019 small but important corrections to array order...
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commit | commitdiff | tree |
| 2022-11-13 |
Ben Soares | JAL-4019 Added tests for new Nucleotide sequence detection
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commit | commitdiff | tree |
| 2022-11-13 |
Ben Soares | JAL-4019 improvement to short sequence nucleotide detection...
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commit | commitdiff | tree |
| 2022-11-10 |
Ben Soares | JAL-4019 Nucleotide Ambiguity Colour Scheme added....
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commit | commitdiff | tree |
| 2022-10-26 |
Ben Soares | JAL-3416 (and others) increasing number of STDERR lines...
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commit | commitdiff | tree |
| 2022-10-25 |
Ben Soares | JAL-3416 Making FlatLaF default for macs due to a problem...
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commit | commitdiff | tree |
| 2022-10-11 |
Ben Soares | JAL-4014 Changed gecos display names to match labels...
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commit | commitdiff | tree |
| 2022-08-23 |
Ben Soares | JAL-4014 JAL-4063 Added gecos colourScheme names (INFO...
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commit | commitdiff | tree |
| 2022-07-26 |
Ben Soares | JAL-4036 Fixed the virus_host_id query field
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commit | commitdiff | tree |
| 2022-07-26 |
Ben Soares | JAL-4036 Added text to help about different number...
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commit | commitdiff | tree |
| 2022-07-25 |
Ben Soares | JAL-4036 updated help about new UniProt API
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commit | commitdiff | tree |
| 2022-07-25 |
Ben Soares | JAL-4036 moved a comment block
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commit | commitdiff | tree |
| 2022-07-25 |
Ben Soares | JAL-4034 button looks better also on other OSes with...
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commit | commitdiff | tree |
| 2022-07-22 |
Ben Soares | JAL-4036 Changes made from code review CR-JAL-265
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commit | commitdiff | tree |
| 2022-07-22 |
Ben Soares | JAL-4036 Add getDbName to the GFTSPanelI and add an...
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commit | commitdiff | tree |
| 2022-07-22 |
Ben Soares | JAL-4036 removing the query field code from the dropdown...
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commit | commitdiff | tree |
| 2022-07-21 |
Ben Soares | JAL-4036 Don't autosearch changing index when autosearch...
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commit | commitdiff | tree |
| 2022-07-21 |
Ben Soares | JAL-4036 add search fieldname to dropdown list
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commit | commitdiff | tree |
| 2022-07-21 |
Ben Soares | JAL-4036 removed often duplicated pluralisation in...
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commit | commitdiff | tree |
| 2022-07-21 |
Ben Soares | JAL-4036 New configuration, target and pagination process...
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commit | commitdiff | tree |
| 2022-07-15 |
Ben Soares | JAL-4034 Use the new non-modal JDialog for 3DBeacons...
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commit | commitdiff | tree |
| 2022-07-15 |
Ben Soares | JAL-4034 Allow request for non-modal JDialog, which...
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commit | commitdiff | tree |
| 2022-07-12 |
Ben Soares | JAL-4034 change to jalview property name
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commit | commitdiff | tree |
| 2022-07-12 |
Ben Soares | JAL-4034 showConfirmDialog works for both desktop and...
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commit | commitdiff | tree |
| 2022-07-11 |
Ben Soares | JAL-4034 Non-blocking 3D Beacons query after warning...
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commit | commitdiff | tree |
| 2022-07-11 |
Ben Soares | JAL-4034 allow a jalview_property to set the threshold...
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commit | commitdiff | tree |
| 2022-06-28 |
Ben Soares | Merge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS_APQH...
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commit | commitdiff | tree |
| 2022-06-28 |
Ben Soares | JAL-1988 Don't put Quit in the File menu if there's...
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commit | commitdiff | tree |
| 2022-06-23 |
Ben Soares | Merge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS_APQH...
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commit | commitdiff | tree |
| 2022-06-23 |
Ben Soares | JAL-1988 Check for setHandler capability to avoid About...
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commit | commitdiff | tree |
| 2022-06-13 |
Ben Soares | JAL-1988 Hack to ensure Quit dialog box is moved to...
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commit | commitdiff | tree |
| 2022-06-13 |
Ben Soares | JAL-4004 Fix missing whatsNew.html when not building...
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commit | commitdiff | tree |
| 2022-06-07 |
Ben Soares | JAL-4020 class formatting
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commit | commitdiff | tree |
| 2022-06-06 |
Ben Soares | JAL-4020 updated tests
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commit | commitdiff | tree |
| 2022-06-06 |
Ben Soares | JAL-4020 class reformatting
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commit | commitdiff | tree |
| 2022-04-27 |
Ben Soares | JAL-1544 version number typo, probably copy and paste
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commit | commitdiff | tree |
| 2022-04-27 |
Ben Soares | JAL-3989 Populate template files for hugo build: archive...
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commit | commitdiff | tree |
| 2022-04-25 |
Ben Soares | JAL-3989 moved getdown build dirs to build/website...
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commit | commitdiff | tree |
| 2022-04-25 |
Ben Soares | JAL-3989 Independent creation of JSON installer sections
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commit | commitdiff | tree |
| 2022-04-21 |
Ben Soares | Merge branch 'develop' into merge/JAL-3978+JAL-3553...
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commit | commitdiff | tree |
| 2022-04-21 |
Ben Soares | Merge branch 'develop' into task/JAL-3991_check_actual_JAVA_...
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commit | commitdiff | tree |
| 2022-04-06 |
Ben Soares | JAL-3991 Made info displayed only when needed (Java...
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commit | commitdiff | tree |
| 2022-04-06 |
Ben Soares | JAL-3991 Added information output about the slightly...
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commit | commitdiff | tree |
| 2022-04-06 |
Ben Soares | JAL-3991 JAVA_COMPILE_VERSION put into build_properties...
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commit | commitdiff | tree |
| 2022-04-05 |
Ben Soares | JAL-3989 slight refactor of build.gradle, add more...
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commit | commitdiff | tree |
| 2022-04-04 |
Ben Soares | JAL-3989 fix a build date once in build.gradle, not...
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commit | commitdiff | tree |
| 2022-03-31 |
Ben Soares | Merge branch 'task/JAL-3553_improved_install4j_output_txt...
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commit | commitdiff | tree |
| 2022-03-31 |
Ben Soares | Merge branch 'develop' into improvement/JAL-3978_add_gradle_...
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commit | commitdiff | tree |
| 2022-03-21 |
Ben Soares | JAL-3416 Updated FlatLaF to 2.1
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commit | commitdiff | tree |
| 2022-03-18 |
Ben Soares | JAL-3978 Using getdowninstanceappdir and getdowninstanceappb...
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commit | commitdiff | tree |
| 2022-03-18 |
Ben Soares | JAL-3978 Getdown add getdownappbase property to launched...
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commit | commitdiff | tree |
| 2022-03-18 |
Ben Soares | JAL-3978 New tasks to build archive 'old' dir with...
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commit | commitdiff | tree |
| 2022-03-16 |
Ben Soares | JAL-3978 task stub and getdown splash screens
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commit | commitdiff | tree |
| 2022-03-13 |
Ben Soares | Append git.hash and git.branch to RELEASE file stored...
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commit | commitdiff | tree |
| 2022-03-11 |
Ben Soares | JAL-3973 This fixes the gradle build when not in a...
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commit | commitdiff | tree |
| 2022-03-08 |
Ben Soares | JAL-3103 updated help doc to remove default browser...
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commit | commitdiff | tree |
| 2022-03-08 |
Ben Soares | JAL-3103 Removed code and unused widgets for defaultBrowser
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commit | commitdiff | tree |
| 2022-03-08 |
Ben Soares | JAL-3103 Remove BrowserLauncher2 and use Desktop.browse...
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commit | commitdiff | tree |
| 2022-03-08 |
Ben Soares | JAL-3103 add BrowserLauncher2 LGPLv2.1 to THIRDPARTYLIBS
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commit | commitdiff | tree |
| 2022-03-08 |
Ben Soares | JAL-3103 Put jalview.jar first in getdown for .properties...
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commit | commitdiff | tree |
| 2022-03-07 |
Ben Soares | JAL-3103 Switched to (a wrapper around) BrowserLauncher2
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commit | commitdiff | tree |
| 2022-03-04 |
Ben Soares | JAL-3830 added command line to whatsnew and releases
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commit | commitdiff | tree |
| 2022-03-04 |
Ben Soares | JAL-3830 Added new command line usage to docs
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commit | commitdiff | tree |
| 2022-03-04 |
Ben Soares | JAL-3608 added to LaF documentation
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commit | commitdiff | tree |
| 2022-03-03 |
Ben Soares | JAL-3830 fix broken/buggy install4j9 setting of executeSetup...
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commit | commitdiff | tree |
| 2022-03-02 |
Ben Soares | JAL-3691 bumped the version to 1.8.3-1.2.12 in source...
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commit | commitdiff | tree |
| 2022-03-02 |
Ben Soares | JAL-3962 Added jre/bin and dist folders to the native...
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commit | commitdiff | tree |
| 2022-03-02 |
Ben Soares | JAL-3130 updated download_jres.sh
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commit | commitdiff | tree |
| 2022-02-12 |
Ben Soares | JAL-3949 fix testProps path and make line count more...
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commit | commitdiff | tree |
| 2022-02-11 |
Ben Soares | Merge branch 'update/JAL-3949_jalview_bin_Console_to_cure_sa...
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commit | commitdiff | tree |
| 2022-02-11 |
Ben Soares | JLogger loglevel check on whether to call the actual...
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commit | commitdiff | tree |
| 2022-02-11 |
Ben Soares | JAL-3949 fixed failing commandlinetests due to more...
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commit | commitdiff | tree |
| 2022-02-11 |
Ben Soares | JAL-3949 added Java Console autoscrolling help paragraph
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commit | commitdiff | tree |
| 2022-02-11 |
Ben Soares | JAL-3949 read ~/.jalview_properties before initialising...
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commit | commitdiff | tree |
| 2022-02-11 |
Ben Soares | Merge branch 'develop' into update/JAL-3949_abstracted_loggi...
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commit | commitdiff | tree |
| 2022-02-11 |
Ben Soares | JAL-3949 Complete new abstracted logging framework...
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commit | commitdiff | tree |
| 2022-02-04 |
Ben Soares | JAL-3949 An attempt at converting to Log4j 2 -- no...
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commit | commitdiff | tree |
| 2022-02-03 |
Ben Soares | JAL-3949 upgraded log4j to 2.17.1 (no actual known...
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commit | commitdiff | tree |
| 2022-01-29 |
Ben Soares | JAL-3830 JAL-3420 added new jvl_file to install4j9...
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commit | commitdiff | tree |
| 2022-01-29 |
Ben Soares | Merge branch 'develop' into improvement/JAL-3830_install4j9_...
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commit | commitdiff | tree |
| 2022-01-28 |
Ben Soares | Merge branch 'develop' into improvement/JAL-3420_match_jvl_i...
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commit | commitdiff | tree |
| 2022-01-28 |
Ben Soares | new jvl_file svg, png, ico and icns files, and changed...
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commit | commitdiff | tree |
| 2022-01-28 |
Ben Soares | Merge branch 'develop' into JAL-3416_different_look_and_feel...
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commit | commitdiff | tree |
| 2022-01-27 |
Ben Soares | update to flatlaf 2.0.1
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commit | commitdiff | tree |
| 2022-01-12 |
Ben Soares | JAL-3703 Test that fails in Windows only, and only...
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commit | commitdiff | tree |
| 2022-01-11 |
Ben Soares | JAL-3703 fix Gff3 shared InputStream with embedded...
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commit | commitdiff | tree |
| 2022-01-11 |
Ben Soares | close filehandles straight after parse, without setting...
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commit | commitdiff | tree |
| 2022-01-11 |
Ben Soares | JAL-3937 update releases.html
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commit | commitdiff | tree |
| 2022-01-10 |
Ben Soares | JAL-3937 enable AIA download of intermediate certificates...
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commit | commitdiff | tree |
| 2022-01-10 |
Ben Soares | JAL-3937 enable AIA download of intermediate certificates...
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commit | commitdiff | tree |
| 2021-12-22 |
Ben Soares | Merge branch 'develop' into critical/JAL-3933_log4j_update_f...
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commit | commitdiff | tree |
| 2021-12-22 |
Ben Soares | JAL-3934 updated log4j from 2.16.0 to 2.17.0
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commit | commitdiff | tree |
| 2021-12-22 |
Ben Soares | JAL-3934 updated log4j from 2.16.0 to 2.17.0
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commit | commitdiff | tree |
| 2021-12-15 |
Ben Soares | JAL-3933 updated THIRDPARTYLIBS
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commit | commitdiff | tree |
| 2021-12-15 |
Ben Soares | JAL-3933 updated THIRDPARTYLIBS
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commit | commitdiff | tree |
| 2021-12-15 |
Ben Soares | JAL-3933 updated THIRDPARTYLIBS
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commit | commitdiff | tree |
| 2021-12-15 |
Ben Soares | JAL-3933 updated THIRDPARTYLIBS
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commit | commitdiff | tree |
| 2021-12-14 |
Ben Soares | JAL-3933 updated log4j and slf4j jars with log4j1.2...
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commit | commitdiff | tree |
| 2021-12-14 |
Ben Soares | JAL-3933 updated slf4j to 1.7.32
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commit | commitdiff | tree |
| 2021-12-14 |
Ben Soares | JAL-3933 Updated log4j jars with log4j-2.16.0 and compatibil...
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commit | commitdiff | tree |
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