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Merge branch 'bug/JAL-3633_read_proxy_settings_from_jalview_properties_in_getdown...
2022-01-27 Jim ProcterMerge branch 'bug/JAL-3633_read_proxy_settings_from_jalview_...
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2022-01-26 Jim ProcterJAL-3763 (for whatever reason) need to increase timeout...
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2022-01-26 Jim ProcterJAL-3746 note about adding JAL-3700,JAL-3751,JAL-3763...
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2022-01-26 Jim ProcterMerge branch 'merge/develop_task/JAL-3763_newDatasetForCds...
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2022-01-26 Jim ProcterJAL-3763 (for whatever reason) need to increase timeout...
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2022-01-26 Jim ProcterMerge branch 'task/JAL-3763_newDatasetForCds' into...
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2022-01-18 Jim ProcterJAL-3940 update 2.11.2 release notes for 2.11.1.7 patch...
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2022-01-17 Jim ProcterJAL-3940 update 2.11.2 release notes for 2.11.1.7 patch...
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2022-01-17 Jim ProcterJAL-3746 possible release date 1st Feb 2022
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2022-01-17 Jim ProcterJAL-3746 Release notes for patch JAL-3702 JAL-3915
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2022-01-17 Jim ProcterMerge branch 'bug/JAL-3703_saving_a_file_in_Windows_10_fails...
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2022-01-06 Jim ProcterJAL-3746 update release history for 2.11.1.5 and 2...
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2022-01-06 Jim ProcterMerge branch 'critical/JAL-3933_log4j_update_for_develop_bra...
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2021-12-15 Jim ProcterJAL-3933 remove obsolete Castor logging configuration
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2021-12-15 Jim ProcterJAL-3933 configure root logger console appender to...
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2021-12-13 Jim ProcterJAL-3829 isCanonical should by default be false - ensure...
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2021-12-13 Jim ProcterJAL-3855 JAL-3829 don’t need to make up alphafold model...
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2021-12-13 Jim ProcterJAL-3929 preserve lowercase pdbid in group name for...
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2021-12-08 Jim ProcterMerge branch 'to_merge/r2_11_2/JAL-3904_improved_alignpanelA...
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2021-12-08 Jim ProcterJAL-3551 pymol docs - work in progress
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2021-12-08 Jim ProcterJAL-3929 don’t use the url encoded pdbId in feature...
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2021-12-08 Jim ProcterJAL-3616 update messages/tooltips/menu items to use...
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2021-12-08 Jim ProcterJAL-3551 JAL-3931 view pymol commands/responses in...
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2021-12-08 Jim ProcterJAL-3931 remove % and - from ids so Pymol doesn’t strip...
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2021-12-08 Jim ProcterJAL-3929 URLencode pdbid to remove problematic characters...
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2021-12-02 Jim ProcterJAL-3904 use new AlignPanel API method
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2021-12-02 Jim ProcterJAL-3904 simple method to make an alignPanel the currently...
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2021-11-19 Jim ProcterJAL-3926 disable autosearch by default
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2021-11-08 Jim ProcterJAL-3855 verify pdb suffix is preserved when locally...
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2021-11-08 Jim ProcterJAL-3855 JAL-1731 reuse the StructureViewer.fetchPdbFile...
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2021-11-08 Jim ProcterJAL-3855 try harder to ignore DNA/RNA only structures...
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2021-11-08 Jim ProcterJAL-3921 wait around until session file has been written
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2021-11-05 Jim ProcterJAL-3829 remove duplicate IDs in 3DBeacons generated...
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2021-11-05 Jim ProcterJAL-3829 format and tidy up unused code
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2021-11-05 Jim ProcterJAL-3919 use model format field to ensure we get the...
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2021-11-05 Jim ProcterJAL-3875 fully reset filter combo-box when fetch 3d...
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2021-11-03 Jim ProcterJAL-3915 JAL-3746 documentation for removed rnaview...
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2021-11-03 Jim ProcterJAL-3916 TODO for improved selection of covering structures
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2021-11-03 Jim ProcterJAL-3916 TODO for improved selection of covering structures
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2021-11-03 Jim ProcterJAL-3915 remove RNAview opts from preferences. Still...
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2021-11-02 Jim ProcterMerge branch 'develop' of https://source.jalview.org...
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2021-11-02 Jim ProcterJAL-3875 test case and patch to verify the query 3d...
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2021-10-18 Jim ProcterMerge branch 'bug/r2_11_2/JAL-3904_structureviewermenu...
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2021-10-18 Jim ProcterJAL-3905 Fix: wait for response when sending mouseovers...
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2021-10-18 Jim ProcterJAL-3904 override buildActionMenu to add in additional...
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2021-10-18 Jim ProcterJAL-3904 failing test
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2021-10-01 Jim ProcterJAL-3616 show name of structure viewer in ‘new view...
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2021-10-01 Jim ProcterJAL-3616 explicit configure external viewer config
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2021-10-01 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
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2021-10-01 Jim ProcterMerge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
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2021-10-01 Jim ProcterJAL-3829 3d beacons logo - misi varadi gave permission...
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2021-10-01 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
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2021-10-01 Jim ProcterMerge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
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2021-10-01 Jim ProcterJAL-3829 fetch 3D beacons now started by clicking button...
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2021-10-01 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons
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2021-09-30 Jim ProcterMerge branch 'bug/JAL-3885_sequence_fetched_not_displaying_P...
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2021-09-29 Jim ProcterJAL-3884 squish alarming but harmless errors when uniprot...
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2021-09-29 Jim ProcterJAL-3881 split on any nonalphanumeric symbol (plus...
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2021-09-29 Jim ProcterJAL-3829 report when 3d-beacons doesn’t provide any...
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2021-09-27 Jim ProcterJAL-3746 update the example corefile for jalviewjs
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2021-09-24 Jim ProcterJAL-3829 open web page for 3d beacons structure by...
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2021-09-24 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons
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2021-09-24 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
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2021-09-24 Jim ProcterJAL-3821 data file for failing test
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2021-09-24 Jim ProcterJAL-3829 right click to view popup menu to show link...
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2021-09-24 Jim ProcterJAL-3829 abstract essential TDB metadata from the user...
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2021-09-23 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
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2021-09-23 Jim ProcterMerge branch 'features/r2_11_2/JAL-3821_reinstate_patch...
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2021-09-23 Jim ProcterJAL-3821 less ambiguous base class name for EMBL and...
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2021-09-23 Jim ProcterJAL-3821 ported to refactored FlatFile parser
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2021-09-23 Jim ProcterJAL-3821 failing test
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2021-09-23 Jim ProcterJAL-3692 JAL-3861 remove extra call to .parse() so...
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2021-09-23 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
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2021-09-23 Jim ProcterMerge branch 'patch/JAL-3874_newJmolAndGradleDedup...
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2021-09-23 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
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2021-09-21 Jim ProcterJAL-3746 release notes and what’s new for 2.11.2 -...
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2021-09-21 Jim ProcterMerge branch 'doc/JAL-3746_Release_2_11_2' into develop
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2021-09-21 Jim ProcterMerge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
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2021-09-21 Jim ProcterJAL-3829 - callback finessing - leave DBRefFetcher...
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2021-09-21 Jim ProcterJAL-3829 prefix PDBe filters with PDBe to make clear...
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2021-09-21 Jim ProcterJAL-3829 alternative UX: need to select 3d-beacons...
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2021-09-21 Jim ProcterJAL-3829 ignore the fake ID generated when a PDB format...
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2021-09-20 Jim ProcterJAL-3829 updated response for P01308
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2021-09-20 Jim ProcterJAL-3829 tests need to wait for dialog to be closed...
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2021-09-20 Jim ProcterJAL-3829 TDBeacons fetcher needs a sequence with at...
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2021-09-20 Jim ProcterJAL-3829 throw the exception even if it has no message
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2021-09-20 Jim ProcterJAL-3829 ensure nulls are not wildcards when retrieving...
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2021-09-20 Jim ProcterJAL-3829 do better at detecting structure type, prompt...
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2021-09-20 Jim ProcterJAL-3829 make sure structure data type reflects actual...
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2021-09-20 Jim ProcterJAL-3829 store 3db metadata on PDBEntry so it can be...
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2021-09-20 Jim ProcterJAL-3829 allow PDBEntry with file and ID with mismatching...
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2021-09-17 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons
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2021-09-17 Jim ProcterJAL-3079 JAL-3055 remember to reset font transform...
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2021-09-17 Jim ProcterJAL-3874 - replace Jmol with custom build of 14.31...
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2021-09-17 Jim ProcterJAL-2226 transfer chain annotation when calcId, label...
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2021-09-17 Jim ProcterJAL-2226 new method to search for annotation matching...
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2021-09-17 Jim ProcterJAL-3829 belt and braces check to make sure there is...
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2021-09-16 Jim ProcterMerge branch 'develop' into doc/JAL-3746_Release_2_11_2
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2021-09-15 Jim ProcterMerge branch 'Jalview-JS/bug/JAL-3762_URLparamsOverrideInfoA...
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2021-09-15 Jim ProcterJAL-3746 fix bad merge from 2.11.1.4/5 branch cherrypick
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