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2023-08-10	Ben Soares	JAL-629 Change all stdout and stderr output to use...	commit \| commitdiff \| tree
2023-08-10	Ben Soares	JAL-629 Method to use for printStackTrace	commit \| commitdiff \| tree
2023-08-09	Ben Soares	JAL-629 Move more stdout messages to stderr when outputting...	commit \| commitdiff \| tree
2023-08-09	Ben Soares	JAL-629 Default to FASTA if no format given for output...	commit \| commitdiff \| tree
2023-08-09	Ben Soares	JAL-629 Enable output to STDOUT when specifying output...	commit \| commitdiff \| tree
2023-07-28	Ben Soares	JAL-4064 Added more recognisable display names to macOS...	commit \| commitdiff \| tree
2023-07-18	Ben Soares	JAL-4513 move comments	commit \| commitdiff \| tree
2023-07-18	Ben Soares	JAL-4513 now re-add the SwingUtilities.invokeAndWait...	commit \| commitdiff \| tree
2023-07-18	Ben Soares	JAL-4513 reduce wait to invoke fail	commit \| commitdiff \| tree
2023-07-18	Ben Soares	JAL-4513 add a SwingUtilities.invokeAndWait() to see...	commit \| commitdiff \| tree
2023-07-17	Ben Soares	JAL-3599 Updated default eclipse to 'latest' and made...	commit \| commitdiff \| tree
2023-06-30	Ben Soares	JAL-4001 Added a random id to User-Agent to ensure...	commit \| commitdiff \| tree
2023-06-28	Ben Soares	JAL-4001 change Plausible discovery URL	commit \| commitdiff \| tree
2023-06-28	Ben Soares	JAL-4001 remove headless code from analytics	commit \| commitdiff \| tree
2023-06-28	Ben Soares	JAL-4001 Remove analytics for --headless mode	commit \| commitdiff \| tree
2023-06-27	Ben Soares	JAL-4001 Added useful props information	commit \| commitdiff \| tree
2023-06-22	Ben Soares	Merge branch 'develop' into task/JAL-4001_Plausible_API	commit \| commitdiff \| tree
2023-06-22	Ben Soares	JAL-4001 Fix default API url	commit \| commitdiff \| tree
2023-06-22	Ben Soares	JAL-4001 Added 'installation' property.	commit \| commitdiff \| tree
2023-06-22	Ben Soares	JAL-4001 Added lookup to https://www.jalview.org/config...	commit \| commitdiff \| tree
2023-06-22	Ben Soares	JAL-4019 corrected to '>' to '>=' for percentage comparisons	commit \| commitdiff \| tree
2023-06-21	Ben Soares	JAL-4001 Rationalise user-agent string into HttpUtils	commit \| commitdiff \| tree
2023-06-21	Ben Soares	JAL-4001 Change wording from google to plausible or...	commit \| commitdiff \| tree
2023-06-20	Ben Soares	JAL-4001 rename the init method	commit \| commitdiff \| tree
2023-06-20	Ben Soares	JAL-4001 Working Plausible analytics	commit \| commitdiff \| tree
2023-06-20	Ben Soares	JAL-4001 Plausible class	commit \| commitdiff \| tree
2023-06-20	Ben Soares	JAL-4001 Added a genuine client_id (from gtag). Added...	commit \| commitdiff \| tree
2023-06-17	Ben Soares	JAL-4001 Check --nousagestats before doing analytics...	commit \| commitdiff \| tree
2023-06-16	Ben Soares	JAL-4001 Add a _geo=1 to query string and JSON. Add...	commit \| commitdiff \| tree
2023-06-16	Ben Soares	JAL-4001 Remove jgoogleanalytics code and jar	commit \| commitdiff \| tree
2023-06-16	Ben Soares	JAL-4001 make page_location the same encoding as the...	commit \| commitdiff \| tree
2023-06-15	Ben Soares	JAL-4001 Changed for Java 8 compatibility	commit \| commitdiff \| tree
2023-06-14	Ben Soares	JAL-4001 Trying to see extra information in GA dashboard	commit \| commitdiff \| tree
2023-06-14	Ben Soares	Merge branch 'develop' into task/JAL-4001_migrate_googleanal...	commit \| commitdiff \| tree
2023-06-13	Ben Soares	JAL-3599 Tidyup for all OS to use ScheduledExecutor	commit \| commitdiff \| tree
2023-06-12	Ben Soares	JAL-3599 replaced a build dependency for jalviewjsLaunchTest	commit \| commitdiff \| tree
2023-06-11	Ben Soares	JAL-3599 Cater for macOS. ScheduledExecutor timeout...	commit \| commitdiff \| tree
2023-06-11	Ben Soares	JAL-3599 Cater for macOS. --timeout not working yet	commit \| commitdiff \| tree
2023-06-09	Ben Soares	JAL-3599 Make jalviewjs dependOn jalviewjsLaunchTest...	commit \| commitdiff \| tree
2023-06-09	Ben Soares	JAL-3599 Deliberate NPE to see if build plan fails	commit \| commitdiff \| tree
2023-06-09	Ben Soares	JAL-3599 fixed placement of 'First Run' file for chromium...	commit \| commitdiff \| tree
2023-06-09	Ben Soares	JAL-3599 --no-sandbox --disable-gpu and Thorium flatpak...	commit \| commitdiff \| tree
2023-06-09	Ben Soares	JAL-3599 STDOUT and STDERR saved and sent to System...	commit \| commitdiff \| tree
2023-06-09	Ben Soares	JAL-3599 Not redirecting STDOUT or STDERR just for...	commit \| commitdiff \| tree
2023-06-09	Ben Soares	JAL-3599 More stderr/stdout output to logs when anything	commit \| commitdiff \| tree
2023-06-09	Ben Soares	JAL-3599 More stderr/stdout output to logs when failed	commit \| commitdiff \| tree
2023-06-09	Ben Soares	JAL-3599 increase real and virtual time chrome runs...	commit \| commitdiff \| tree
2023-06-08	Ben Soares	JAL-3599 gradle tasks to test JalviewJS launches in...	commit \| commitdiff \| tree
2023-06-08	Ben Soares	JAL-4001 Only send defaultParams for application_launch...	commit \| commitdiff \| tree
2023-06-08	Ben Soares	Merge branch 'develop' into task/JAL-4001_migrate_googleanal...	commit \| commitdiff \| tree
2023-06-08	Ben Soares	JAL-3416 FlatLaf SystemInfo failing in JalviewJS. ...	commit \| commitdiff \| tree
2023-06-08	Ben Soares	Merge branch 'develop' into task/JAL-4001_migrate_googleanal...	commit \| commitdiff \| tree
2023-06-07	Ben Soares	JAL-4001 Javadoc for the method to use	commit \| commitdiff \| tree
2023-06-07	Ben Soares	Merge branch 'develop' into task/JAL-4001_migrate_googleanal...	commit \| commitdiff \| tree
2023-06-07	Ben Soares	Merge branch 'develop' into improvement/JAL-4193_cl_arg_prev...	commit \| commitdiff \| tree
2023-06-07	Ben Soares	JAL-4001 Added more params for application_launch	commit \| commitdiff \| tree
2023-06-07	Ben Soares	JAL-4001 removed a test param	commit \| commitdiff \| tree
2023-06-07	Ben Soares	Merge branch 'develop' into task/JAL-4001_migrate_googleanal...	commit \| commitdiff \| tree
2023-06-07	Ben Soares	Merge branch 'develop' into task/JAL-4001_migrate_googleanal...	commit \| commitdiff \| tree
2023-06-07	Ben Soares	JAL-4001 GA4 tracking is now ENABLED. Currently logging...	commit \| commitdiff \| tree
2023-06-05	Ben Soares	JAL-4001 debugging statements	commit \| commitdiff \| tree
2023-06-05	Ben Soares	JAL-4001 untested GA4 client code	commit \| commitdiff \| tree
2023-06-05	Ben Soares	JAL-4001 most of google analytics client	commit \| commitdiff \| tree
2023-06-05	Ben Soares	JAL-4001 start of GA4 client class	commit \| commitdiff \| tree
2023-06-02	Ben Soares	JAL-3521 Updated debian build.gradle in utils/debian...	commit \| commitdiff \| tree
2023-06-02	Ben Soares	JAL-4001 Spanish translation	commit \| commitdiff \| tree
2023-06-02	Ben Soares	Merge branch 'develop' into task/JAL-4001_migrate_googleanal...	commit \| commitdiff \| tree
2023-06-01	Ben Soares	Merge branch 'develop' into improvement/JAL-4193_cl_arg_prev...	commit \| commitdiff \| tree
2023-06-01	Ben Soares	JAL-629 changes merged in from develop fixed it. Deleted...	commit \| commitdiff \| tree
2023-06-01	Ben Soares	Merge branch 'develop' into features/r2_11_2_alphafold...	commit \| commitdiff \| tree
2023-06-01	Ben Soares	JAL-629 fixing test EBIAlphaFoldTest.checkImportPAEToStructu...	commit \| commitdiff \| tree
2023-06-01	Ben Soares	JAL-4001 Changed title+message to MessageManager	commit \| commitdiff \| tree
2023-06-01	Ben Soares	JAL-629 added data for test	commit \| commitdiff \| tree
2023-06-01	Ben Soares	JAL-4193 JAL-4194 sessionProperties layer in Cache...	commit \| commitdiff \| tree
2023-06-01	Ben Soares	JAL-629 better reference text for --nousagestats	commit \| commitdiff \| tree
2023-05-30	Ben Soares	JAL-629 JAL-4121 Added documentation to Help docs and...	commit \| commitdiff \| tree
2023-05-30	Ben Soares	JAL-4121 adjust test name	commit \| commitdiff \| tree
2023-05-30	Ben Soares	JAL-629 Better formatting of Arg.Opt options in usage...	commit \| commitdiff \| tree
2023-05-30	Ben Soares	JAL-4121 slight refactoring of method name and added...	commit \| commitdiff \| tree
2023-05-27	Ben Soares	JAL-4121 Added a NPE check caught in tests. Added ...	commit \| commitdiff \| tree
2023-05-27	Ben Soares	JAL-4121 Store Arg.Opts in bootstrapArgs. Change Opt...	commit \| commitdiff \| tree
2023-05-26	Ben Soares	JAL-4125 Fixed non-closing external viewers, also added...	commit \| commitdiff \| tree
2023-05-26	Ben Soares	JAL-629 dispose of non-displaying StructureChooser...	commit \| commitdiff \| tree
2023-05-26	Ben Soares	Merge branch 'develop' into feature/JAL-3416_update_to_flatl...	commit \| commitdiff \| tree
2023-05-25	Ben Soares	JAL-3416 JAL-3820 FlatLaf default for everyone, including...	commit \| commitdiff \| tree
2023-05-25	Ben Soares	JAL-3416 better path name	commit \| commitdiff \| tree
2023-05-25	Ben Soares	JAL-3820 JAL-3830 improvements to script launching...	commit \| commitdiff \| tree
2023-05-25	Ben Soares	JAL-3820 Create and use 'Jalview app' symblinks to...	commit \| commitdiff \| tree
2023-05-25	Ben Soares	JAL-3416 remove old flatlaf jars from j8lib	commit \| commitdiff \| tree
2023-05-25	Ben Soares	JAL-4186 fixed a test	commit \| commitdiff \| tree
2023-05-25	Ben Soares	JAL-4186 Turn JvOptionPane Callable<Void> handlers...	commit \| commitdiff \| tree
2023-05-24	Ben Soares	JAL-4186 attempts to work in jalviewjs, still not working	commit \| commitdiff \| tree
2023-05-24	Ben Soares	JAL-4186 fix dialog. broken in JalviewJS	commit \| commitdiff \| tree
2023-05-24	Ben Soares	JAL-3416 slightly improved colours for tabber pane...	commit \| commitdiff \| tree
2023-05-24	Ben Soares	JAL-3416 Updated flatlaf libraries. Native libraries...	commit \| commitdiff \| tree
2023-05-23	Ben Soares	JAL-629 Updated help docs and fixed structure image...	commit \| commitdiff \| tree
2023-05-23	Ben Soares	JAL-629 Added --structureimage code and formatting...	commit \| commitdiff \| tree
2023-05-22	Ben Soares	JAL-629 --structureimage with formatting args.	commit \| commitdiff \| tree
2023-05-21	Ben Soares	JAL-629 Clarify sections of arguments with --help-all...	commit \| commitdiff \| tree
2023-05-20	Ben Soares	JAL-4187 JAL-629 JAL-3830 small adjustments after further...	commit \| commitdiff \| tree
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