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2015-06-04	gmungoc	JAL-1742 don't offer to align another chain to the...	commit \| commitdiff \| tree
2015-06-04	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1757 match only first altloc CA in PDB structure...	commit \| commitdiff \| tree
2015-06-04	gmungoc	JAL-1421 generic collections in MCView package (+unit...	commit \| commitdiff \| tree
2015-05-29	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-05-29	gmungoc	JAL-1753 declare field with interface type; check for...	commit \| commitdiff \| tree
2015-05-29	gmungoc	JAL-1753 Junit for new class	commit \| commitdiff \| tree
2015-05-29	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-05-29	gmungoc	JAL-1753 duplicated code refactored to new class ProgressBar	commit \| commitdiff \| tree
2015-05-20	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-05-20	gmungoc	JAL-1741 nucleotide-aware colour schemes applied to...	commit \| commitdiff \| tree
2015-05-20	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-05-20	gmungoc	JAL-796 JAL-1652 better implementation (key binding...	commit \| commitdiff \| tree
2015-05-18	gmungoc	JAL-1663 detect tab out of RGB value; correct field...	commit \| commitdiff \| tree
2015-05-18	gmungoc	JAL-1663 apply new colour correctly; source formatting	commit \| commitdiff \| tree
2015-05-18	gmungoc	JAL-1652 Escape key now closes Find dialog	commit \| commitdiff \| tree
2015-05-18	gmungoc	JAL-1737 updated JUnit so it creates positional annotations	commit \| commitdiff \| tree
2015-05-15	gmungoc	JAL-1270 main method converted to JUnit test	commit \| commitdiff \| tree
2015-05-15	gmungoc	JAL-1270 main method converted to JUnit test 'as seen'	commit \| commitdiff \| tree
2015-05-15	gmungoc	JAL-1270 main method converted 'as seen' to JUnit	commit \| commitdiff \| tree
2015-05-15	gmungoc	JAL-1737 ignore non-positional annotations for display	commit \| commitdiff \| tree
2015-05-15	gmungoc	JAL-1270 added test for regex actually used; include...	commit \| commitdiff \| tree
2015-05-15	gmungoc	JAL-1270 main methods converted to JUnit	commit \| commitdiff \| tree
2015-05-14	gmungoc	JAL-1727 JAL-1270 obsolete DAS registry URL updated...	commit \| commitdiff \| tree
2015-05-14	gmungoc	JAL-1270 set Cache properties in setUp to ensure test...	commit \| commitdiff \| tree
2015-05-13	gmungoc	JAL-1575 no-cache headers added to (empty) rest response	commit \| commitdiff \| tree
2015-05-13	gmungoc	JAL-1712 fixes/tests for Castor binding of EMBL XML...	commit \| commitdiff \| tree
2015-05-13	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-05-13	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-05-12	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-05-12	gmungoc	JAL-1712 fixes/tests for Castor binding and 'show flanking...	commit \| commitdiff \| tree
2015-05-07	gmungoc	JAL-1575 bare bones RestHandler added	commit \| commitdiff \| tree
2015-05-06	gmungoc	Merge branch 'Release_2_9_Branch' of https://source...	commit \| commitdiff \| tree
2015-05-06	gmungoc	JAL-1725 broadcast empty selection (to clear selection)	commit \| commitdiff \| tree
2015-05-06	gmungoc	JAL-1725 limit thread pool size; prefix /jalview to...	commit \| commitdiff \| tree
2015-05-06	gmungoc	JAL-1725 parse atomSpec with submodel; debug output...	commit \| commitdiff \| tree
2015-05-06	gmungoc	JAL-1725 fix for redirect of POST to GET, debug output...	commit \| commitdiff \| tree
2015-05-05	gmungoc	JAL-1725 jetty libraries added to classpath	commit \| commitdiff \| tree
2015-05-05	gmungoc	JAL-1725 first version of Jetty server / chimera selection...	commit \| commitdiff \| tree
2015-05-01	gmungoc	JAL-1684 hook added to test for fields ignored in copy...	commit \| commitdiff \| tree
2015-05-01	gmungoc	JAL-1690 refining 'copy format from' as applied to...	commit \| commitdiff \| tree
2015-05-01	gmungoc	JAL-1690 unused fields removed	commit \| commitdiff \| tree
2015-04-30	Mungo Carstairs	JAL-845 reduced height to allow for Desktop decorators...	commit \| commitdiff \| tree
2015-04-29	gmungoc	JAL-1690 preserve scaling in New View, synch id width...	commit \| commitdiff \| tree
2015-04-29	gmungoc	JAL-1686 ViewStyle.hashCode implemented	commit \| commitdiff \| tree
2015-04-28	gmungoc	Merge branch 'Release_2_9_Branch' of https://source...	commit \| commitdiff \| tree
2015-04-28	gmungoc	JAL-1684 removed reflection from ViewStyle (to Junit...	commit \| commitdiff \| tree
2015-04-27	gmungoc	Merge branch 'Release_2_8_3_Branch' of https://source...	commit \| commitdiff \| tree
2015-04-27	gmungoc	JAL-1691 more stable linked scrolling across split...	commit \| commitdiff \| tree
2015-04-24	gmungoc	JAL-1691 prevent propagation of scrolling on mouseover...	commit \| commitdiff \| tree
2015-04-23	gmungoc	JAL-1702 corrected check for 'no colours selected'	commit \| commitdiff \| tree
2015-04-23	gmungoc	JAL-1706 distinguish between 'font too small' and ...	commit \| commitdiff \| tree
2015-04-23	gmungoc	JAL-1681 create mappings before AlignFrame to ensure...	commit \| commitdiff \| tree
2015-04-23	gmungoc	JAL-845 only 'follow' sort command in coding complement...	commit \| commitdiff \| tree
2015-04-23	gmungoc	JAL-845 set split frame divider safely for eXpand Views	commit \| commitdiff \| tree
2015-04-23	gmungoc	Merge branch 'Release_2_8_3_Branch' of https://source...	commit \| commitdiff \| tree
2015-04-23	gmungoc	JAL-1706 fixed to correctly restore the last dialog...	commit \| commitdiff \| tree
2015-04-22	gmungoc	JAL-845 fix SplitFrame sizing on eXpand Views	commit \| commitdiff \| tree
2015-04-22	gmungoc	'Test' added to help identify "too small" font families...	commit \| commitdiff \| tree
2015-04-22	gmungoc	JAL-1690 fix NPE on Cancel when not in split frame	commit \| commitdiff \| tree
2015-04-21	gmungoc	JAL-1693 mappings added back to the original alignment	commit \| commitdiff \| tree
2015-04-21	gmungoc	JAL-1702 wording improved; also some duplicate entries...	commit \| commitdiff \| tree
2015-04-20	gmungoc	JAL-1690 shorter text to fit in FontChooser dialog	commit \| commitdiff \| tree
2015-04-20	gmungoc	JAL-1701 first draft of help page for Split View (not...	commit \| commitdiff \| tree
2015-04-14	gmungoc	JAL-1693 generate multiple exon sequences for 1-many...	commit \| commitdiff \| tree
2015-04-13	gmungoc	JAL-1695 enableSplitFrame=true for applet example	commit \| commitdiff \| tree
2015-04-13	gmungoc	JAL-1690 adjusted wording	commit \| commitdiff \| tree
2015-04-13	gmungoc	JAL-1693 make exon alignment for get-xref splitframe...	commit \| commitdiff \| tree
2015-04-13	gmungoc	JAL-1681 work around ConcurrentModificationException...	commit \| commitdiff \| tree
2015-04-13	gmungoc	JAL-1690 show 'scale protein' in protein _and_ dna...	commit \| commitdiff \| tree
2015-04-13	gmungoc	JAL-1695 new property ENABLE_SPLIT_FRAME	commit \| commitdiff \| tree
2015-04-13	gmungoc	JAL-1695 parameter controls whether SplitFrame is enabled	commit \| commitdiff \| tree
2015-04-08	gmungoc	JAL-1684 adjusting parameters for split frame applet...	commit \| commitdiff \| tree
2015-04-08	gmungoc	JAL-1690 scaleProteinAsCdna new applet parameter documented	commit \| commitdiff \| tree
2015-04-08	gmungoc	JAL-1270 protection against NullPointer when run as...	commit \| commitdiff \| tree
2015-04-08	gmungoc	JAL-1691 applet SplitFrame scrolling; pull up of 5...	commit \| commitdiff \| tree
2015-04-08	gmungoc	JAL-1270 separated standalone tests out of Jws2ParamView...	commit \| commitdiff \| tree
2015-04-07	gmungoc	JAL-1270 test added	commit \| commitdiff \| tree
2015-04-07	gmungoc	JAL-1691 linked scrollling in split frame (Desktop)	commit \| commitdiff \| tree
2015-04-07	gmungoc	JAL-1691 defensive check for null	commit \| commitdiff \| tree
2015-04-02	gmungoc	JAL-1690 'scale protein as cDNA' options in Preferences...	commit \| commitdiff \| tree
2015-04-01	gmungoc	JAL-845 fixed start/end range of a mapped SequenceGroup	commit \| commitdiff \| tree
2015-04-01	gmungoc	JAL-1264 reinstate Show annotations menu item	commit \| commitdiff \| tree
2015-03-30	gmungoc	JAL-1264 remove broken applet build dependencies	commit \| commitdiff \| tree
2015-03-30	gmungoc	JAL-1270 fall back on compbio if no localhost:8080...	commit \| commitdiff \| tree
2015-03-30	gmungoc	JAL-1596 refactoring to allow unit tests to start and...	commit \| commitdiff \| tree
2015-03-30	gmungoc	JAL-1270 Cache.logger initialisation added	commit \| commitdiff \| tree
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	commit \| commitdiff \| tree
2015-03-26	gmungoc	JAL-1688 compiler warnings removed	commit \| commitdiff \| tree
2015-03-26	gmungoc	JAL-1665 getSequenceFeatures; Desktop.getAlignFrames...	commit \| commitdiff \| tree
2015-03-25	gmungoc	JAL-1270 System.exit(0) changed to fail() so as not...	commit \| commitdiff \| tree
2015-02-19	gmungoc	JAL-1665 refactored Sequence.getSequenceFeatures	commit \| commitdiff \| tree
2015-01-27	gmungoc	JAL-1588 new class renamed	commit \| commitdiff \| tree
2015-01-26	gmungoc	Merge branch 'features/JAL-1588saveChimeraSession'...	commit \| commitdiff \| tree
2015-01-26	gmungoc	JAL-1588 restoring saved Chimera session(s)	commit \| commitdiff \| tree
2015-01-23	gmungoc	JAL-1588 first working (?) restore of Chimera session...	commit \| commitdiff \| tree
2015-01-14	gmungoc	JAL-1629 .jar option removed from Alignment File Save...	commit \| commitdiff \| tree
2015-01-09	gmungoc	JAL-1588 check Chimera session file still exists	commit \| commitdiff \| tree
2015-01-08	gmungoc	JAL-1588 part work save/restore of Chimera session	commit \| commitdiff \| tree
2015-01-07	gmungoc	JAL-1551 formatting applied	commit \| commitdiff \| tree
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