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JAL-3829 allow client-side selection of structures for a sequence by passing in disco...
2021-09-08 Jim ProcterJAL-3829 allow client-side selection of structures...
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2021-09-08 Jim ProcterJAL-3829 JAL-3868 TODO
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2021-09-08 Jim ProcterJAL-3829 formatting
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2021-09-08 Jim ProcterJAL-3829 integration test verifying mock response is...
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2021-09-06 Jim ProcterJAL-3829 work in progress - look up additional metadata...
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2021-09-06 Jim ProcterJAL-3829 look up column in FTS data
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2021-09-06 Jim ProcterJAL-3829 mocking for PDBFTS for related query to UniprotFTS...
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2021-09-06 Jim ProcterJAL-3829 pull out structure chooser query source tests...
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2021-09-03 Jim ProcterJAL-3829 JAL-3865 test structure chooser queries to...
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2021-09-03 Jim ProcterJAL-3829 use sequence dependent constructor for structure...
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2021-09-03 Jim ProcterJAL-3829 mocking for testing 3D-Beacons FTS endpoint
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2021-09-03 Jim ProcterJAL-3863 promote non-canonical version of dbref to...
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2021-09-03 Jim ProcterJAL-3829 comments on the 3D structure chooser’s initialisati...
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2021-09-03 Jim ProcterJAL-3865 isolate PDB and TDB clients and last query...
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2021-09-03 Jim ProcterJAL-3863 passing test to verify a uniprot accession...
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2021-09-03 Jim ProcterJAL-3829 JAL-3865 StructureChooserQuerySource implementation...
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2021-09-03 Jim ProcterJAL-3855 don’t need to query Alphafold2 repository...
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2021-09-03 Jim ProcterJAL-3829 refactored FilterOption provider to the StructureCh...
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2021-09-02 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons
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2021-09-02 Jim ProcterMerge branch 'cherry-pick/r2_11_2_JAL-3509' into develop
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2021-09-02 gmungocJAL-1842 unit test updated for EnsemblGene feature...
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2021-09-02 gmungocJAL-1842 adjust code to match changed semantics of...
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2021-09-02 gmungocJAL-3509 JAL-1842 minor tidying of code
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2021-09-02 gmungocJAL-1842 remove redundant call to FeatureRenderer.featuresAd...
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2021-09-02 gmungocJAL-3509 better placement of call to notifyFeaturesChanged()
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2021-09-02 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetching...
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2021-08-30 Jim ProcterJAL-3863 fix test and note about fragility
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2021-08-30 Jim ProcterJAL-3863 add canonical DBRefEntry flag to Jalview project
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2021-08-30 Jim ProcterJAL-3829 generalised Alphafold retrieval mechanism...
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2021-08-30 Jim ProcterJAL-3863 mark first accession retrieved from Uniprot...
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2021-08-30 Jim ProcterJAL-3829 Structure chooser specific FTS interface and...
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2021-08-30 Jim ProcterMerge branch 'feature/JAL-3855_ebi_alphafold_import...
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2021-08-30 Jim ProcterJAL-3829 3d-beacons structure chooser logic (not yet...
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2021-08-30 Jim ProcterJAL-3829 pulled out more of the FTS dependent parts...
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2021-08-30 Jim ProcterJAL-3829 updated tests for 3db fetcher’s working FTS...
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2021-08-30 Jim ProcterJAL-3829 proof in principle 3d-beacons sequence fetcher...
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2021-08-30 Jim ProcterJAL-3829 3d-beacons has a custom alignment retrieval...
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2021-08-30 Jim ProcterJAL-3674 Jmol seems to sometimes return a null for...
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2021-08-30 Jim ProcterJAL-3829 fixed up the 3d-beacons data columns definitions...
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2021-08-30 Jim ProcterJAL-3829 JAL-2176 - TODO re unused argument in FTSRestClientI
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2021-08-30 Jim ProcterJAL-3829 tidying up PDBFTSRestClient test responses...
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2021-08-30 Jim ProcterJAL-3829 Javadoc for FTSColumnPreferences
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2021-08-30 Jim ProcterJAL-3829 pushed the PDBFTSClient specific code to new...
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2021-08-30 Jim ProcterJAL-3829 removed unneeded attribute in FTS core
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2021-08-30 arngucciJAL-3829_spike minor changes
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2021-08-30 arngucciJAL-3832 Gui working, with 3DBeacons parameters
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2021-08-30 arngucciMerge branch 'arnaud/develop' into arnaud/JAL-3929_spike...
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2021-08-30 Jim ProcterJAL-3829 forgot to add in the dummy 3d-beacons db proxy
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2021-07-27 Jim ProcterJAL-3674 Jmol seems to sometimes return a null for...
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2021-07-27 Jim ProcterJAL-3855 suppress NPE when trying to retrieve SIFTS...
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2021-07-27 Jim ProcterJAL-3855 ALPHAFOLD database source based on the PDB...
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2021-07-27 Jim ProcterJAL-3855 check if an alpha fold ID and retrieve using...
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2021-07-27 Jim ProcterJAL-3855 check for existence of an alpha fold model...
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2021-07-27 Jim ProcterJAL-3855 convenience method to check a URL will return...
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2014-10-23 Jim ProcterMerge branch 'hotfix/JAL-1521' into Release_2_8_1_Branch
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2014-10-23 Jim ProcterJAL-1521 patch is to remove xerces from classpath....
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2014-10-23 Jim ProcterJAL-1521 test to check registry is returning sources
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2014-10-23 Jim ProcterMerge branch 'Release_2_8_1_Branch'
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2014-10-23 Jim Procterpatch fixes JAL-1558
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2014-10-23 Jim ProcterMerge branch 'Release_2_8_1_Branch'
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2014-10-23 Jim ProcterJAL-1503 tag 2.8.1b1 hotfix - last in 2.8.1 line
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2014-10-21 Jim ProcterMerge branch 'forpush/JAL-674_dssp' into develop
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2014-10-21 Jim ProcterJAL-674 check for null vector before ...
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2014-10-21 Jim ProcterMerge branch 'patch_sjf4j_typo' into develop
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2014-10-21 Jim ProcterJAL-1216 update varna dependency string in jalviewLite...
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2014-10-21 Jim ProcterMerge branch 'patch_sjf4j_typo' into develop
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2014-10-21 Jim ProcterJWS-59 JAL-1216 patch broken InstallAnywhere build
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2014-10-21 Jim ProcterMerge branch 'forpush/JAL-674_dssp' into develop
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2014-10-21 Jim ProcterJAL-1551 reinstate missing import
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2014-10-21 Jim ProcterJAL-674 initial implementation - only need to extract...
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2014-10-21 Jim ProcterJAL-1551 crlf
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2014-10-21 Jim ProcterJAL-674 JAL-1551 imports dropped during merge
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2014-10-21 Jim ProcterJAL-1216 update to VARNA 3.91
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2014-10-21 Jim ProcterJAL-674 remove any spurious PDBEntrys generated by...
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2014-10-21 Jim ProcterJAL-674 methods and test for PDB derived annotation...
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2014-10-21 Jim ProcterJAL-674 store ID in MCview.PDBfile calcId string, not...
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2014-10-21 Jim ProcterJAL-674 don't create multiple secondary structure lines...
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2014-10-21 Jim ProcterJAL-674 test for the test for presence of annotation...
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2014-10-21 Jim ProcterJAL-674 test for presence of annotation derived from...
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2014-10-21 Jim ProcterJAL-1551 formatting
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2014-10-21 Jim ProcterJAL-1551 formatting
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2014-10-21 Jim ProcterJAL-674 patch for duplicate row bug
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2014-10-21 Jim ProcterJAL-674 test for duplicate alignment annotation rows...
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2014-10-21 Jim ProcterJAL-1551 formatting
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2014-10-21 Jim ProcterJAL-674 patch to ensure existing annotation is properly...
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2014-10-21 Jim ProcterJAL-674 test to ensure sequence and annotation on sequence...
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2014-10-21 Jim ProcterJAL-1551 source formatting
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2014-10-21 Jim ProcterJAL-674 JAL-207 getTers for aligned sequences in dataset...
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2014-10-21 Jim ProcterJAL-674 refactor method to match and transfer annotation...
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2014-10-21 Jim ProcterJAL-1551 formatting
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2014-10-21 Jim ProcterMerge branch 'features/JAL-1264_showHideAnnotations...
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2014-10-21 Jim ProcterJAL-1551 crlf changes
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2014-10-16 Jim ProcterMerge branch 'feature/JAL-674_dssp' into features/JAL...
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2014-10-15 Jim ProcterMerge branch 'jims_crlf_hell_JAL-1551' of https://source...
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2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto
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2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto
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2014-10-15 Jim ProcterJAL-674 always try to extract secondary structure when...
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2014-10-15 Jim ProcterJAL-674 support preservation of any annotation created...
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2014-10-15 Jim ProcterJAL-674 make transferAnnotation method static
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2014-10-15 Jim ProcterJAL-348 JAL-674 JAL-1564 TODO and implementation error...
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