| 2018-11-15 |
gmungoc | JAL-3032 JAL-2344 project files are 'identifiable'
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commit | commitdiff | tree |
| 2018-11-14 |
gmungoc | JAL-3032 don't throw Exception to signal chain not...
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commit | commitdiff | tree |
| 2018-11-14 |
gmungoc | JAL-3152 holding patch for colour Jmol by sequence
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commit | commitdiff | tree |
| 2018-11-13 |
gmungoc | JAL-3026 add equals() to test
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commit | commitdiff | tree |
| 2018-11-13 |
gmungoc | JAL-3026 tweak to test class
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commit | commitdiff | tree |
| 2018-11-13 |
gmungoc | JAL-3026 test for File.hashCode problem
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commit | commitdiff | tree |
| 2018-11-13 |
gmungoc | Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of...
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commit | commitdiff | tree |
| 2018-11-12 |
gmungoc | JAL-3076 JalviewJS requires lower case content-type...
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commit | commitdiff | tree |
| 2018-11-08 |
gmungoc | JAL-3116 better unmarshalling of EMBL/Uniprot XML
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commit | commitdiff | tree |
| 2018-11-08 |
gmungoc | JAL-3048 use JalviewJS compatible JalviewFileChooser...
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commit | commitdiff | tree |
| 2018-11-08 |
gmungoc | JAL-3048 override showOpenDialog with JalviewJS compatible...
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commit | commitdiff | tree |
| 2018-11-01 |
gmungoc | Merge branch 'feature/JAL-3143ensemblJSON' into
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commit | commitdiff | tree |
| 2018-11-01 |
gmungoc | Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of
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commit | commitdiff | tree |
| 2018-11-01 |
gmungoc | Merge branch 'feature/JAL-3144noJTree' into
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commit | commitdiff | tree |
| 2018-11-01 |
gmungoc | Merge branch 'Jalview-BH/JAL-3026' into
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commit | commitdiff | tree |
| 2018-11-01 |
gmungoc | JAL-3048 JAL-3056 reinstate save/load project, colour...
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commit | commitdiff | tree |
| 2018-10-31 |
gmungoc | Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into...
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commit | commitdiff | tree |
| 2018-10-31 |
gmungoc | Merge branch 'Jalview-BH/JAL-3026' into feature/JAL...
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commit | commitdiff | tree |
| 2018-10-31 |
gmungoc | JAL-3026 skip unsupported HttpURLConnection methods...
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commit | commitdiff | tree |
| 2018-10-31 |
hansonr | JAXB upgrade; URLConnection.getResourceCode()
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commit | commitdiff | tree |
| 2018-10-30 |
gmungoc | JAL-3144 left aligned looks better (and works in JalviewJS!)
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commit | commitdiff | tree |
| 2018-10-30 |
gmungoc | JAL-3144 query URL corrected
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commit | commitdiff | tree |
| 2018-10-30 |
gmungoc | JAL-3144 close SequenceFetcher before opening PDB/Uniprot...
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commit | commitdiff | tree |
| 2018-10-30 |
gmungoc | JAL-3144 spelling, Javadoc, abstract method for JalviewJS
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commit | commitdiff | tree |
| 2018-10-30 |
gmungoc | Merge branch 'Jalview-BH/JAL-3026' into feature/JAL...
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commit | commitdiff | tree |
| 2018-10-29 |
gmungoc | JAL-3144 SequenceFetcher without JDatabaseTree
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commit | commitdiff | tree |
| 2018-10-29 |
gmungoc | JAL-3038 add ActionListener and FocusListener to SwingJS...
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commit | commitdiff | tree |
| 2018-10-25 |
gmungoc | JAL-3143 unit tests updated for code changes!
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commit | commitdiff | tree |
| 2018-10-25 |
gmungoc | JAL-3143 comma-delimited feature attributes for alleles,
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commit | commitdiff | tree |
| 2018-10-25 |
gmungoc | JAL-3143 fetch Ensembl(Genomes) features as JSON not GFF
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commit | commitdiff | tree |
| 2018-09-28 |
gmungoc | JAL-3063 service param files read/saved using JAXB...
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commit | commitdiff | tree |
| 2018-09-28 |
gmungoc | JAL-3063 top level element added to JalviewWsParamSet.xsd
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commit | commitdiff | tree |
| 2018-09-28 |
gmungoc | JAL-3063 comments re use of xjc to generate Java binding...
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commit | commitdiff | tree |
| 2018-09-24 |
gmungoc | JAL-3063 tidy commented out code
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commit | commitdiff | tree |
| 2018-09-21 |
gmungoc | JAL-3063 wrappers with check for null getting optional...
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commit | commitdiff | tree |
| 2018-09-20 |
gmungoc | JAL-2843 tweaks to help text for filters
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commit | commitdiff | tree |
| 2018-09-20 |
gmungoc | JAL-2843 help text for colour by attribute, feature...
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commit | commitdiff | tree |
| 2018-09-19 |
gmungoc | JAL-3120 preserve plain colour value when changing...
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commit | commitdiff | tree |
| 2018-09-19 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2018-09-19 |
gmungoc | JAL-3063 use JAXB for 'Save as Project' and load project...
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commit | commitdiff | tree |
| 2018-09-19 |
gmungoc | JAL-3063 unit test for save/load project switched to...
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commit | commitdiff | tree |
| 2018-09-18 |
gmungoc | JAL-3063 Save/Load user defined colours using JAXB
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commit | commitdiff | tree |
| 2018-09-18 |
gmungoc | JAL-3063 Save/Load user colour scheme using JAXB
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commit | commitdiff | tree |
| 2018-09-18 |
gmungoc | JAL-3063 top level element added to colours schema...
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commit | commitdiff | tree |
| 2018-09-18 |
gmungoc | JAL-3063 New View via JAXB
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commit | commitdiff | tree |
| 2018-09-18 |
gmungoc | JAL-3063 temporary extra menu option to save/load project...
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commit | commitdiff | tree |
| 2018-09-18 |
gmungoc | JAL-3063 first version of Jalview2XML using JAXB to...
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commit | commitdiff | tree |
| 2018-09-18 |
gmungoc | JAL-3063 JAXB binding classes generated by xjc from...
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commit | commitdiff | tree |
| 2018-09-18 |
gmungoc | JAL-3063 tweak schema so JAXB tool xjc recognises XML...
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commit | commitdiff | tree |
| 2018-09-18 |
gmungoc | JAL-3063 tweak schema so JAXB generates enums for enumerated...
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commit | commitdiff | tree |
| 2018-09-17 |
gmungoc | JAL-3116 test method renamed to match code
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commit | commitdiff | tree |
| 2018-09-17 |
gmungoc | JAL-3116 unit tests adapted to EMBL over JAXB
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commit | commitdiff | tree |
| 2018-09-14 |
gmungoc | JAL-3116 parse EMBL XML with JAXB (todo: update unit...
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commit | commitdiff | tree |
| 2018-09-13 |
gmungoc | JAL-3116 Uniprot XML unmarshalled using JAXB not Castor
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commit | commitdiff | tree |
| 2018-09-12 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2018-09-12 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2018-09-12 |
gmungoc | JAL-1551 reinstated Save actions
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commit | commitdiff | tree |
| 2018-09-11 |
gmungoc | JAL-3113 override minimum frame size in a way that...
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commit | commitdiff | tree |
| 2018-09-11 |
gmungoc | JAL-3048 recoded edit View Name dialog for JalviewJS
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commit | commitdiff | tree |
| 2018-09-11 |
gmungoc | JAL-3056 offer New / Expand / Gather View in JalviewJS
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commit | commitdiff | tree |
| 2018-09-03 |
gmungoc | Merge branch 'trialMerge' into releases/Release_2_10_5_Branch
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commit | commitdiff | tree |
| 2018-09-03 |
gmungoc | JAL-3076 fetch Ensembl sequence as JSON instead of...
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commit | commitdiff | tree |
| 2018-09-03 |
gmungoc | JAL-3079 drop use of clip region while drawing wrapped...
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commit | commitdiff | tree |
| 2018-08-31 |
gmungoc | JAL-3003 remove redundant call to drawSelectionGroup
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commit | commitdiff | tree |
| 2018-08-31 |
gmungoc | Merge branch 'bug/JAL-3003epsWithSelection' into trialMerge
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commit | commitdiff | tree |
| 2018-08-30 |
gmungoc | Merge branch 'bug/JAL-247pngShowHiddenSeqMarks' into...
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commit | commitdiff | tree |
| 2018-08-30 |
gmungoc | JAL-3055 refinements to alternatives to deriveFont
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commit | commitdiff | tree |
| 2018-08-30 |
gmungoc | JAL-3079 don't create new Graphics to draw as it confuses...
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commit | commitdiff | tree |
| 2018-08-28 |
gmungoc | JAL-3055 corrected logo drawing in JS
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commit | commitdiff | tree |
| 2018-08-28 |
gmungoc | JAL-3055 corrections to use of AffineTransform to scale...
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commit | commitdiff | tree |
| 2018-08-27 |
gmungoc | JAL-3055 restore original deriveFont code for Java...
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commit | commitdiff | tree |
| 2018-08-27 |
gmungoc | JAL-247 comment to clarify wrapped print algorithm
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commit | commitdiff | tree |
| 2018-08-24 |
gmungoc | JAL-247 print/export wrapped uses common code to draw...
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commit | commitdiff | tree |
| 2018-08-24 |
gmungoc | JAL-3087 include full alignment height in repeating...
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commit | commitdiff | tree |
| 2018-08-24 |
gmungoc | JAL-247 draw/print sequence ids now uses common code...
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commit | commitdiff | tree |
| 2018-08-23 |
gmungoc | JAL-3059 use correct border colour for groups
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commit | commitdiff | tree |
| 2018-08-23 |
gmungoc | JAL-3003 draw selection group outline on main graphics...
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commit | commitdiff | tree |
| 2018-08-22 |
gmungoc | JAL-3049 JAL-3032 tidy/i18n code, remove redundant...
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commit | commitdiff | tree |
| 2018-08-21 |
gmungoc | Merge branch 'Jalview-BH/JAL-3026' of https://source...
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commit | commitdiff | tree |
| 2018-08-21 |
gmungoc | JAL-3032 MCview package renamed mc_view in test classes
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commit | commitdiff | tree |
| 2018-08-21 |
gmungoc | JAL-2717 corrected i18n of colour scheme names
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commit | commitdiff | tree |
| 2018-08-21 |
gmungoc | JAL-3032 JAL-3084 test class for JS layout bug(s)
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commit | commitdiff | tree |
| 2018-08-20 |
gmungoc | JAL-3032 Feature Settings menu item always enabled...
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commit | commitdiff | tree |
| 2018-08-20 |
gmungoc | JAL-3032 variant of Sequence Details panel for JalviewJS
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commit | commitdiff | tree |
| 2018-08-20 |
gmungoc | JAL-3084 force EPS output to "Text" for JalviewJS
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commit | commitdiff | tree |
| 2018-08-20 |
gmungoc | JAL-3084 hide startup file, Chimera, HTML/SVG, Web...
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commit | commitdiff | tree |
| 2018-08-17 |
gmungoc | JAL-3048 remove obsolete way of handling dialogs in...
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commit | commitdiff | tree |
| 2018-08-17 |
gmungoc | JAL-3048 adapt 'input from URL' dialog for JalviewJS
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commit | commitdiff | tree |
| 2018-08-17 |
gmungoc | JAL-3038 unit test updates for JalviewJS workaround...
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commit | commitdiff | tree |
| 2018-08-16 |
gmungoc | JAL-3038 workaround to replace editable combobox with...
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commit | commitdiff | tree |
| 2018-08-16 |
gmungoc | Merge branch 'bug/JAL-3082selectRegex' into Jalview...
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commit | commitdiff | tree |
| 2018-08-16 |
gmungoc | JAL-3082 one more test condition
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commit | commitdiff | tree |
| 2018-08-16 |
gmungoc | JAL-3082 handle regex error, exclusive threshold, unit...
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commit | commitdiff | tree |
| 2018-08-15 |
gmungoc | JAL-3048 use JS-compatible JvOptionPane method
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commit | commitdiff | tree |
| 2018-08-15 |
gmungoc | Merge branch 'feature/JAL-3080clearTreeGroups' into...
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commit | commitdiff | tree |
| 2018-08-15 |
gmungoc | JAL-3080 remove tree partition if no groups created
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commit | commitdiff | tree |
| 2018-08-14 |
gmungoc | JAL-3078 reset Tree font (only!) on Cancel
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commit | commitdiff | tree |
| 2018-08-14 |
gmungoc | JAL-3032 tidy AlignmentProperties display for JalviewJS
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commit | commitdiff | tree |
| 2018-08-14 |
gmungoc | JAL-3056 no Save/Load colours xml in JalviewJS
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commit | commitdiff | tree |
| 2018-08-10 |
gmungoc | JAL-3056 suppress Lineart option in JalviewJS
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commit | commitdiff | tree |
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