jalview.git
2019-06-05 tvaJAL-3285 method call change to HMMBuild not included...
2019-06-05 tvaJAL-3285 method call change in SeqPanel to match develop
2019-06-05 tvaJAL-3285 change method declaration in AAFrequency to...
2019-06-05 tvaJAL-3285 changed method call on AnnotationRenderer...
2019-06-05 tvaJAL-3285 code changes to Jalview2XML not included in...
2019-06-05 tvaJAL-3285 add unmerged code to AlignmentAnnotation
2019-06-05 tvaJAL-3285 method call name change to SeqPanel not includ...
2019-06-05 tvaJAL-3285 method call name change in OverviewPanel not...
2019-06-05 tvaJAL-3285 small method call name change to AnnotationLabels
2019-06-05 tvaJAL-3285 add unmerged code to SequenceGroup
2019-06-05 tvaJAL-3285 small method call name change missed in Consen...
2019-06-05 tvaJAL-3285 small code changes to ConsensusThread not...
2019-06-05 tvaJAL-3285 small code changes to AnnotationRenderer not...
2019-06-05 tvaJAL-3285 code changes to AnnotationLabels not included...
2019-06-05 tvaJAL-3285 add unmerged features to AlignViewportI
2019-06-05 tvaJAL-3285 add unmerged features to AlignViewport
2019-06-05 tvaJAL-3285 add unmerged features into AlignmentViewport
2019-06-05 tvaJAL-3285 add methods and small changes to StockholmFile...
2019-06-04 Jim ProcterMerge branch 'develop' into developtomchmmer
2019-06-04 Ben SoaresJAL-3287 correct local file URI for appbase and getdown...
2019-06-04 Ben SoaresJAL-3287 adjustment to HelpLinksChecker
2019-06-04 Ben SoaresJAL-3287 adjustment to HelpLinksChecker to run in Windo...
2019-05-31 Ben SoaresJAL-3247 Adjusted Uninstall Old Jalview.app to just...
2019-05-29 gmungocJAL-2738 error logging if no ##reference found
2019-05-29 gmungocJAL-2738 accept .csi, default to GRCh37:homo_sapiens...
2019-05-28 Ben SoaresJAL-3277 Fixed getdown splashscreen. For unknown reason...
2019-05-28 Ben SoaresJAL-1988 Some TEST code accidentally left in now remove...
2019-05-28 Jalview Development... JAL-3247 sign the AppleScript uninstaller
2019-05-28 Ben SoaresJAL-3141 deleted TODO comment in Messages_es
2019-05-28 Ben SoaresMerge branch 'develop' into task/JAL-3141_JAL-3247_merge
2019-05-27 Ben SoaresJAL-3141 Added HashMap types for Java 1.8 compatibility
2019-05-27 Ben SoaresMerge branch 'task/JAL-3141_Customise_checkbox' into...
2019-05-27 Ben SoaresJAL-3141 Object array cast missing
2019-05-27 Ben SoaresMerge branch 'task/JAL-3247_JAL-3246_JAL-3254_JAL-3236_...
2019-05-27 Ben SoaresMerge branch 'develop' into task/JAL-3247_JAL-3246_JAL...
2019-05-27 Ben SoaresJAL-3247 Added AppleScript based App to run old Jalview...
2019-05-27 Ben SoaresJAL-3141 Generified the JvUtils.buildComboWithTooltips...
2019-05-27 gmungocJAL-3141 test file in test folder not examples
2019-05-25 Ben SoaresJAL-3141 One more error log fix
2019-05-25 Ben SoaresJAL-3141 Added tooltips on Schemes dropdown and Customi...
2019-05-24 Ben SoaresJAL-3141 Fixes recommended from gmc's test
2019-05-24 gmungocJAL-1988 Spanish typo corrección
2019-05-24 Ben SoaresJAL-3141 Fixed vertical size of the example filenames...
2019-05-24 Ben SoaresJAL-3141 Fixed tests
2019-05-24 Ben SoaresJAL-3141 Reworked a lot of BackupFiles to allow the...
2019-05-22 Ben SoaresMerge branch 'bug/JAL-3141_backupfiles_prefs_widget_dis...
2019-05-22 gmungocJAL-3111 help file spelling correction
2019-05-21 Ben SoaresJAL-3247 Launcher start improvements. RPM and DEB no...
2019-05-21 gmungocJAL-3273 small correction to expected result calculation
2019-05-20 Ben SoaresMerge branch 'task/JAL-3254_improved_max_memory_stack_s...
2019-05-20 Ben SoaresJAL-3247 Unix shell installer and tar archive corrected...
2019-05-20 Ben SoaresJAL-3254 Improved memory setting (allows mem for OS...
2019-05-13 Jim ProcterMerge branch 'task/JAL-3247_Install4j_improvements...
2019-05-13 Ben SoaresMerge branch 'task/JAL-3236_install4j_linux_unix_userla...
2019-05-13 Ben SoaresJAL-3247 nogradle option on this mac build/install...
2019-05-13 Ben SoaresJAL-3247 JAL-3254 JAL-3260 Fixed: JVL file jalview...
2019-05-10 Jim ProcterMerge branch 'task/JAL-3246_local_getdown_files' into...
2019-05-10 Ben SoaresJAL-3246 JAL-3247 Reworked JVL files as getdown.txt...
2019-05-10 Jim ProcterMerge branch 'task/JAL-3236_install4j_linux_unix_userla...
2019-05-09 Ben SoaresJAL-3236 Added unixInstaller to install4jMediaTypes...
2019-05-09 Jim ProcterMerge branch 'task/JAL-3246_local_getdown_files' into...
2019-05-09 Ben SoaresJAL-3247 JAL-3254 Ensure .jvp and .jvl appear first...
2019-05-09 Ben SoaresJAL-3247 JAL-3254 Fixed file association launch behavio...
2019-05-08 Ben SoaresJAL-3246 add -Pgetdown_local=true to use local files
2019-05-08 Ben SoaresJAL-3247 JAL-3254 changing default location of jalview...
2019-05-08 Ben SoaresJAL-3247 JAL-3254 Getdown now opening any files thrown...
2019-05-08 Ben SoaresJAL-3247 JAL-3254 Automatically creating correct file...
2019-05-08 Ben SoaresJAL-3247 JAL-3254 Automatically creating correct file...
2019-05-08 Ben SoaresJAL-3247 Script to produce auto file association files...
2019-05-08 Ben SoaresJAL-3247 Note in launcher.log when using a JVL file
2019-05-07 Ben SoaresJAL-3247 Changed JVL file to be a props file, with...
2019-05-07 Ben SoaresJAL-3247 Script to automatically install Jalview from...
2019-05-07 Ben SoaresJAL-3247 Auto generated file associations from jalview...
2019-05-06 Ben SoaresJAL-3247 Allowing 'file' protocol URL with empty domain...
2019-05-06 Ben SoaresJAL-3247 Code changes to getdown. Double click open...
2019-05-06 Ben SoaresJAL-3247 improvements
2019-05-06 Ben SoaresJAL-3247 Some getdown image file changes/tidying
2019-05-06 gmungocJAL-3240 known issue for release notes
2019-05-06 gmungocJAL-3239 release note
2019-05-06 gmungocJAL-3244 release note
2019-05-06 gmungocMerge remote-tracking branch 'origin/bug/JAL-3239monosp...
2019-05-06 gmungocJAL-3244 delete obsolete method
2019-05-03 Ben SoaresJAL-3247 First attempt at getdown code to add macOS...
2019-05-03 Ben SoaresJAL-3247 Part way towards adding double-click opening...
2019-05-02 Ben SoaresJAL-3247 Improved file associations on macOS and Windows
2019-05-02 gmungocJAL-3239 draw EPS or SVG one character at a time (even... bug/JAL-3239monospacedEps
2019-05-02 gmungocMerge branch 'bug/JAL-3244jmolWindows' into develop
2019-05-02 gmungocJAL-3244 renamed Platform method for clarity bug/JAL-3244jmolWindows
2019-05-02 Ben Soaresadding another getdown file (produced during a getdown...
2019-05-02 Ben SoaresJAL-3247 jvp jvl File associations, JRE variablised...
2019-05-01 Ben SoaresFixed -Djvl=true in install4j JVM invocation
2019-05-01 Ben SoaresExtra JVL file association in the installer. Shadowed...
2019-05-01 gmungocJAL-3244 ignore file path separator when comparing...
2019-05-01 Ben SoaresMerge branch 'task/JAL-3243_PDB_free_text_error' into...
2019-04-30 Ben SoaresJAL-3243 Replaced javax.ws jar compatible with jersey... task/JAL-3243_PDB_free_text_error
2019-04-30 Ben SoaresJAL-3196 Correcting the source for getdown (already...
2019-04-30 gmungocJAL-3241 simplified enum constructors for classloadabil...
2019-04-29 gmungocJAL-2738 JAL-2743 update unit test to match new VCF...
2019-04-29 gmungocJAL-3003 help page mention EPS doesn't support transparency
2019-04-26 Jim ProcterJAL-3236 see also previous commit - tweak the install4j...
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