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jalview.git
2014-11-17 Charles OfoegbuJAL-1043 patch to show warning dialog when webservice... commit | commitdiff | tree | snapshot
2014-11-17 gmungocJAL-1293 hide/show sequence annotations with hide/revea... commit | commitdiff | tree | snapshot
2014-11-17 gmungocJAL-1586 chimera file chooser added, validate on OK... commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterMerge branch 'r282_portforward' into develop commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterMerge branch 'Release_2_8_2_Branch' of https://source... commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterMerge branch 'r282_portforward' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterJAL-1469 help documentation commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterJAL-1469 help documentation commit | commitdiff | tree | snapshot
2014-11-17 Charles OfoegbuMerge branch 'bug/JAL-1570_unable-to-add-JABAWS-Server... commit | commitdiff | tree | snapshot
2014-11-17 Charles Ofoegbuupdated documentation commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterMerge branch 'mrg_dev_282' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterMerge branch 'Release_2_8_2_Branch' into mrg_dev_282 commit | commitdiff | tree | snapshot
2014-11-17 Charles Ofoegbucomand line support for svg generation commit | commitdiff | tree | snapshot
2014-11-17 gmungocJAL-1580 size parameters dialog to height of Desktop commit | commitdiff | tree | snapshot
2014-11-17 Charles OfoegbuMerge branch 'bug/JAL-1570_unable-to-add-JABAWS-Server... commit | commitdiff | tree | snapshot
2014-11-17 Charles OfoegbuJAL-1570 patch to enable adding a webservice which... commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterMerge branch 'mrg_dev_282' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-11-17 gmungocJAL-1528 Chimera Help doc + fixes to setting colours commit | commitdiff | tree | snapshot
2014-11-17 gmungocJAL-1528 new Preference CHIMERA_PATH (Preferences ... commit | commitdiff | tree | snapshot
2014-11-17 gmungocJAL-1528 Chimera tidy errors, focus after align, close... commit | commitdiff | tree | snapshot
2014-11-17 gmungocJAL-1528 bug fixes and adjustments to Chimera interface commit | commitdiff | tree | snapshot
2014-11-17 Jim ProcterMerge commit '1d9e1c80fb6c0e32313a976ae0065fd32639f2bc... commit | commitdiff | tree | snapshot
2014-11-17 Charles Ofoegbucomand line support for svg generation commit | commitdiff | tree | snapshot
2014-11-14 Charles OfoegbuMerge branch 'feature/JAL-1541_BioJsMSAViewer-export... commit | commitdiff | tree | snapshot
2014-11-14 Charles Ofoegbugit conflict resolution commit | commitdiff | tree | snapshot
2014-11-14 Charles Ofoegbuupdated BioJsTemplate.txt commit | commitdiff | tree | snapshot
2014-11-14 Charles Ofoegbuhouse keeping features/JAL-1541_BioJsMSAViewer-export-option commit | commitdiff | tree | snapshot
2014-11-14 Charles OfoegbuMerge branch 'features/JAL-1541_BioJsMSAViewer-export... commit | commitdiff | tree | snapshot
2014-11-14 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2014-11-14 Charles OfoegbuHouse keeping commit | commitdiff | tree | snapshot
2014-11-14 gmungocJAL-1528 Chimera Help doc + fixes to setting colours commit | commitdiff | tree | snapshot
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure... commit | commitdiff | tree | snapshot
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure... commit | commitdiff | tree | snapshot
2014-11-13 Jim ProcterJAL-1469 added jfreesvg to desktop dependencies commit | commitdiff | tree | snapshot
2014-11-13 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2014-11-13 gmungocmerge commit | commitdiff | tree | snapshot
2014-11-13 gmungocJAL-1528 new Preference CHIMERA_PATH (Preferences ... commit | commitdiff | tree | snapshot
2014-11-13 gmungocJAL-1528 Chimera tidy errors, focus after align, close... commit | commitdiff | tree | snapshot
2014-11-13 Charles Ofoegbuadded jfreesvg dependency to class path commit | commitdiff | tree | snapshot
2014-11-12 Charles Ofoegbuhouse-keeping commit | commitdiff | tree | snapshot
2014-11-12 Charles OfoegbuAdded support for SVG Export commit | commitdiff | tree | snapshot
2014-11-12 gmungocJAL-1528 bug fixes and adjustments to Chimera interface commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterMerge branch 'features/JAL-1541_BioJsMSAViewer-export... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-1541 exclude all unnecessary jalview.io classes... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterMerge branch 'features/JAL-1541_BioJsMSAViewer-export... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterMerge branch 'develop' into features/JAL-1541_BioJsMSAV... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-974 fix class contamination for jalviewLite build commit | commitdiff | tree | snapshot
2014-11-12 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into... commit | commitdiff | tree | snapshot
2014-11-12 Jim Procterjavadoc commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 use the getMapping/transfer to transfer annotat... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 patch broken getMapping function commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 switch from .transfer to .liftOver for transfer... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 note about broken .transfer method (expect... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 javadoc commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 new tests and deprecated tests for PDB mapping... commit | commitdiff | tree | snapshot
2014-11-12 Charles OfoegbuExcluded HtmlFile.java dependencies from AppletFomatAdapter commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config commit | commitdiff | tree | snapshot
2014-11-12 Charles Ofoegbumearge with develop commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config commit | commitdiff | tree | snapshot
2014-11-12 Charles OfoegbuModified biojs exporter/importer to preserve SequenceFe... commit | commitdiff | tree | snapshot
2014-11-11 gmungocJAL-1527 opening a project saved with JMol should use... commit | commitdiff | tree | snapshot
2014-11-07 Charles OfoegbuUpdated BioJsTemplate to not show the menu by default... commit | commitdiff | tree | snapshot
2014-11-07 Charles OfoegbuModified BioJsHTMLOutput.java to clean up and close... commit | commitdiff | tree | snapshot
2014-11-07 Charles OfoegbuModified BioJsHTMLOutput.java to use class loader while... commit | commitdiff | tree | snapshot
2014-11-06 Charles OfoegbuChanges from JAL-1541 patch commit | commitdiff | tree | snapshot
2014-11-06 Charles OfoegbuUpdated BioJs Html to be capable of launching jalivew commit | commitdiff | tree | snapshot
2014-11-06 Jim ProcterMerge branch 'features/JAL-1152annotationSorting' into... commit | commitdiff | tree | snapshot
2014-11-06 Jim ProcterMerge branch 'features/JAL-1541_BioJsMSAViewer-export... commit | commitdiff | tree | snapshot
2014-11-06 gmungocJAL-1152 use a proper RadioButton not a faked one commit | commitdiff | tree | snapshot
2014-11-05 gmungocJAL-674 Prefences tweaks incl help documentation for... commit | commitdiff | tree | snapshot
2014-11-05 gmungocJAL-1152 new Structure tab on Preferences for SS deriva... commit | commitdiff | tree | snapshot
2014-11-04 gmungocJAL-1152 help updates for Preferences commit | commitdiff | tree | snapshot
2014-11-04 gmungocJAL-1152 annotation sort algorithm optimisation commit | commitdiff | tree | snapshot
2014-11-04 Jim ProcterJAL-1213 normalise sequence extracted from Jmol in... commit | commitdiff | tree | snapshot
2014-11-04 Jim ProcterJAL-1213 test to ensure JMol extracted sequences are... commit | commitdiff | tree | snapshot
2014-11-03 gmungocMerge branch 'features/JAL-1152annotationSorting' of... commit | commitdiff | tree | snapshot
2014-11-03 gmungocJAL-1152 annotation sorting preferences and help docume... commit | commitdiff | tree | snapshot
2014-11-03 Jim ProcterMerge branch 'develop' into features/JAL-1152annotation... commit | commitdiff | tree | snapshot
2014-11-03 Jim ProcterMerge branch 'bug/JAL-1250_redundance-removal' into... commit | commitdiff | tree | snapshot
2014-11-03 Jim ProcterMerge branch 'develop' into features/JAL-1152annotation... commit | commitdiff | tree | snapshot
2014-11-03 Jim ProcterMerge branch 'features/ssFromPDBEntry' into develop commit | commitdiff | tree | snapshot
2014-11-03 Jim ProcterJAL-795 JAL-674 tweaked logic to avoid black annotation... commit | commitdiff | tree | snapshot
2014-11-03 Jim Procterfix for JAL-1579 create threshold object for annotation... commit | commitdiff | tree | snapshot
2014-11-03 Jim ProcterJAL-1578 test property accessors/copy constructor commit | commitdiff | tree | snapshot
2014-11-03 Jim ProcterJAL-1578 JAL-674 store/restore alignment annotation... commit | commitdiff | tree | snapshot
2014-11-03 Jim ProcterJAL-1578 formatting and imports commit | commitdiff | tree | snapshot
2014-11-03 Jim ProcterJAL-674 peptide structure input so test is not dependen... commit | commitdiff | tree | snapshot
2014-11-03 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2014-11-03 Jim ProcterJAL-674 JAL-961 JAL-1578 accessors and copy constructor... commit | commitdiff | tree | snapshot
2014-11-03 Jim Procterjavadoc commit | commitdiff | tree | snapshot
2014-10-31 gmungocJAL-1152 bug fix for 'no sort' case + tests for autocal... commit | commitdiff | tree | snapshot
2014-10-31 gmungocJAL-1152 menu tweaks plus new option to put Autocalc... commit | commitdiff | tree | snapshot
2014-10-31 Jim ProcterJAL-674 JAL-961 pass row reference to handler to check... commit | commitdiff | tree | snapshot
2014-10-31 Jim ProcterJAL-674 JAL-961 properties to stash additional informat... commit | commitdiff | tree | snapshot
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