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jalview.git
2015-01-07 Jim ProcterJAL-1483 basic test of sequence similarity score model... commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 source formatting commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 refactor NJTree constructor to allow preconfig... commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 register feature similarity model commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 null features not displayed commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 check dataset for features if none found on... commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 organise imports commit | commitdiff | tree | snapshot
2015-01-07 Jim ProcterJAL-1483 making type visible also adds it to registry commit | commitdiff | tree | snapshot
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 commit | commitdiff | tree | snapshot
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc commit | commitdiff | tree | snapshot
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure... commit | commitdiff | tree | snapshot
2014-11-13 Jim ProcterJAL-1469 added jfreesvg to desktop dependencies commit | commitdiff | tree | snapshot
2014-11-13 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2014-11-13 gmungocmerge commit | commitdiff | tree | snapshot
2014-11-13 gmungocJAL-1528 new Preference CHIMERA_PATH (Preferences ... commit | commitdiff | tree | snapshot
2014-11-13 gmungocJAL-1528 Chimera tidy errors, focus after align, close... commit | commitdiff | tree | snapshot
2014-11-12 Charles Ofoegbuhouse-keeping commit | commitdiff | tree | snapshot
2014-11-12 Charles OfoegbuAdded support for SVG Export commit | commitdiff | tree | snapshot
2014-11-12 gmungocJAL-1528 bug fixes and adjustments to Chimera interface commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterMerge branch 'features/JAL-1541_BioJsMSAViewer-export... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-1541 exclude all unnecessary jalview.io classes... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterMerge branch 'features/JAL-1541_BioJsMSAViewer-export... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterMerge branch 'develop' into features/JAL-1541_BioJsMSAV... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-974 fix class contamination for jalviewLite build commit | commitdiff | tree | snapshot
2014-11-12 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into... commit | commitdiff | tree | snapshot
2014-11-12 Jim Procterjavadoc commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 use the getMapping/transfer to transfer annotat... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 patch broken getMapping function commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 switch from .transfer to .liftOver for transfer... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 note about broken .transfer method (expect... commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 javadoc commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-674 new tests and deprecated tests for PDB mapping... commit | commitdiff | tree | snapshot
2014-11-12 Charles OfoegbuExcluded HtmlFile.java dependencies from AppletFomatAdapter commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config commit | commitdiff | tree | snapshot
2014-11-12 Charles Ofoegbumearge with develop commit | commitdiff | tree | snapshot
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config commit | commitdiff | tree | snapshot
2014-11-12 Charles OfoegbuModified biojs exporter/importer to preserve SequenceFe... commit | commitdiff | tree | snapshot
2014-11-11 gmungocJAL-1527 opening a project saved with JMol should use... commit | commitdiff | tree | snapshot
2014-11-07 Charles OfoegbuUpdated BioJsTemplate to not show the menu by default... commit | commitdiff | tree | snapshot
2014-11-07 Charles OfoegbuModified BioJsHTMLOutput.java to clean up and close... commit | commitdiff | tree | snapshot
2014-11-07 Charles OfoegbuModified BioJsHTMLOutput.java to use class loader while... commit | commitdiff | tree | snapshot
2014-11-06 Charles OfoegbuChanges from JAL-1541 patch commit | commitdiff | tree | snapshot
2014-11-06 Charles OfoegbuUpdated BioJs Html to be capable of launching jalivew commit | commitdiff | tree | snapshot
2014-11-06 Jim ProcterMerge branch 'features/JAL-1152annotationSorting' into... commit | commitdiff | tree | snapshot
2014-11-06 Jim ProcterMerge branch 'features/JAL-1541_BioJsMSAViewer-export... commit | commitdiff | tree | snapshot
2014-11-06 gmungocJAL-1152 use a proper RadioButton not a faked one commit | commitdiff | tree | snapshot
2014-11-05 gmungocJAL-674 Prefences tweaks incl help documentation for... commit | commitdiff | tree | snapshot
2014-11-05 gmungocJAL-1152 new Structure tab on Preferences for SS deriva... commit | commitdiff | tree | snapshot
2014-11-04 gmungocJAL-1152 help updates for Preferences commit | commitdiff | tree | snapshot
2014-11-04 gmungocJAL-1152 annotation sort algorithm optimisation commit | commitdiff | tree | snapshot
2014-11-04 Jim ProcterJAL-1213 normalise sequence extracted from Jmol in... commit | commitdiff | tree | snapshot
2014-11-04 Jim ProcterJAL-1213 test to ensure JMol extracted sequences are... commit | commitdiff | tree | snapshot
2014-11-03 gmungocMerge branch 'features/JAL-1152annotationSorting' of... commit | commitdiff | tree | snapshot
2014-11-03 gmungocJAL-1152 annotation sorting preferences and help docume... commit | commitdiff | tree | snapshot
2014-11-03 Jim ProcterMerge branch 'develop' into features/JAL-1152annotation... commit | commitdiff | tree | snapshot
2014-11-03 Jim ProcterMerge branch 'bug/JAL-1250_redundance-removal' into... commit | commitdiff | tree | snapshot
2014-11-03 Jim ProcterMerge branch 'develop' into features/JAL-1152annotation... commit | commitdiff | tree | snapshot
2014-11-03 Jim ProcterMerge branch 'features/ssFromPDBEntry' into develop commit | commitdiff | tree | snapshot
2014-11-03 Jim ProcterJAL-795 JAL-674 tweaked logic to avoid black annotation... commit | commitdiff | tree | snapshot
2014-11-03 Jim Procterfix for JAL-1579 create threshold object for annotation... commit | commitdiff | tree | snapshot
2014-11-03 Jim ProcterJAL-1578 test property accessors/copy constructor commit | commitdiff | tree | snapshot
2014-11-03 Jim ProcterJAL-1578 JAL-674 store/restore alignment annotation... commit | commitdiff | tree | snapshot
2014-11-03 Jim ProcterJAL-1578 formatting and imports commit | commitdiff | tree | snapshot
2014-11-03 Jim ProcterJAL-674 peptide structure input so test is not dependen... commit | commitdiff | tree | snapshot
2014-11-03 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2014-11-03 Jim ProcterJAL-674 JAL-961 JAL-1578 accessors and copy constructor... commit | commitdiff | tree | snapshot
2014-11-03 Jim Procterjavadoc commit | commitdiff | tree | snapshot
2014-10-31 gmungocJAL-1152 bug fix for 'no sort' case + tests for autocal... commit | commitdiff | tree | snapshot
2014-10-31 gmungocJAL-1152 menu tweaks plus new option to put Autocalc... commit | commitdiff | tree | snapshot
2014-10-31 Jim ProcterJAL-674 JAL-961 pass row reference to handler to check... commit | commitdiff | tree | snapshot
2014-10-31 Jim ProcterJAL-674 JAL-961 properties to stash additional informat... commit | commitdiff | tree | snapshot
2014-10-31 Charles Ofoegbuadded jsoup lib to class path commit | commitdiff | tree | snapshot
2014-10-31 Charles OfoegbuJAL-1541 upadated BioJs emmitter to store alignment... commit | commitdiff | tree | snapshot
2014-10-30 Jim ProcterMerge branch 'develop' into features/ssFromPDBEntry commit | commitdiff | tree | snapshot
2014-10-30 Jim ProcterJAL-674 hang on to sequences created by secondary parsi... commit | commitdiff | tree | snapshot
2014-10-30 Jim ProcterJAL-674 count number of annotation transferred in test commit | commitdiff | tree | snapshot
2014-10-30 gmungocJAL-1152 with sticky annotation sort order that updates... commit | commitdiff | tree | snapshot
2014-10-30 Jim ProcterJAL-674 propagate annotation onto mapped sequence and... commit | commitdiff | tree | snapshot
2014-10-30 Jim ProcterJAL-674 register PDB IDs when ever they are resolved... commit | commitdiff | tree | snapshot
2014-10-30 Jim ProcterJAL-674 use PDB ID<>File registry to look up correct... commit | commitdiff | tree | snapshot
2014-10-30 Jim ProcterJAL-674 return original and replacement sequences and... commit | commitdiff | tree | snapshot
2014-10-30 Jim ProcterJAL-674 helpful javadoc for remap method commit | commitdiff | tree | snapshot
2014-10-30 Jim ProcterJAL-674 flag and proxy method to distinguish setMapping... commit | commitdiff | tree | snapshot
2014-10-30 Jim ProcterJAL-674 map on StructureSelectionManager to record... commit | commitdiff | tree | snapshot
2014-10-30 Jim Procterpatch for JAL-795 - use base secondary structure colour... commit | commitdiff | tree | snapshot
2014-10-30 Jim ProcterJAL-674 patch test to verify presence of annotation... commit | commitdiff | tree | snapshot
2014-10-30 Jim ProcterJAL-1551 format and tidy commit | commitdiff | tree | snapshot
2014-10-30 gmungocJAL-1152 prototype of new Annotations menu with sort... commit | commitdiff | tree | snapshot
2014-10-30 Charles OfoegbuJAL-353 updated patch for undo successive remove redund... commit | commitdiff | tree | snapshot
2014-10-30 Charles OfoegbuModified biojs template file commit | commitdiff | tree | snapshot
2014-10-30 Charles OfoegbuJAL-1541 BioJs MSA Viewer export option implementation commit | commitdiff | tree | snapshot
2014-10-29 Charles OfoegbuJAL-353 updated patch for undo successive remove redund... commit | commitdiff | tree | snapshot
2014-10-29 Jim ProcterJAL-1264 JAL-674 test to exercise the AlignmentAnnotati... commit | commitdiff | tree | snapshot
2014-10-29 Jim ProcterJAL-1264 JAL-674 method to copy annotation on structure... commit | commitdiff | tree | snapshot
2014-10-29 Jim ProcterJAL-674 JAL-1264 remap method to allow annotation posit... commit | commitdiff | tree | snapshot
2014-10-28 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
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