jalview.git
2013-05-24 Jim Procterjavadoc and formatting
2013-05-24 Jim ProcterJAL-1297 JAL-1295 JAL-1294 sensible toString for benefi...
2013-05-24 Jim ProcterJAL-1297 JAL-1295 JAL-1294 improve test logic for compa...
2013-05-24 Jim ProcterJAL-1296 reinstated tab characters so example annotatio...
2013-05-24 Jim ProcterJAL-1070 - [ not a real patch ] - include offending...
2013-05-24 Jim ProcterJAL-966 paintrefresher should be abstract [ Merge branc...
2013-05-24 Jim ProcterJAL-1161 conditional parameters for controlling clipping
2013-05-24 Jim ProcterJAL-1292 avoid exception by using bitset of arbitrary...
2013-05-24 Jim ProcterJAL-1161 changed signature to allow clipping bounds...
2013-05-24 Jim Procterformatting
2013-05-24 Jim ProcterJAL-1161 only trigger an annotation repaint in unwrappe...
2013-05-24 Jim ProcterJAL-1161 enable fastPaint for nudges from scroll bars...
2013-05-24 Jim ProcterJAL-1161 stick to api
2013-05-24 Jim Proctertypo
2013-05-21 Jim ProcterMerge branch 'JAL-1199-Stk_writing' into Release_2_8_Branch
2013-05-21 Jim Proctersplit test for general Stockholm IO consistency (JAL... JAL-1199-Stk_writing
2013-05-21 Jim ProcterJAL-1199 JAL-1272 remove main() method from test class
2013-05-21 Jim Procterformatting
2013-05-21 Jim ProcterJAL-1199 JAL-1272 refactored Natasha's test to a generi...
2013-05-13 Jim ProcterMerge branch 'JAL-1289_initCallBack' into Release_2_8_B...
2013-05-13 Jim ProcterJAL-1289 call oninit callback even if no alignment...
2013-04-12 Jim ProcterMerge branch 'JAL-1286_gzip' into Release_2_8_Branch
2013-04-12 Jim ProcterJAL-1286 URL stream reader tries to use a GZIPInputStre...
2013-02-06 jprocterMerge branch 'Release_2_8_Branch' into JAL-1199-Stk_writing
2013-02-06 jprocterMerge branch 'JAL-1199-Stk_writing' into Release_2_8_Branch
2013-02-06 jprocterJAL-1265 basic support for parsing database accessions...
2013-02-06 jprocterJAL-1199 added test for Rfam Stockholm file example
2013-02-06 jprocterJAL-1199 refactored stockholm test code from main class...
2013-02-05 jprocterMerge branch 'JAL-1199-Stk_writing' into Release_2_8_Branch
2013-02-05 jprocterformatting
2013-02-05 jprocterMerge branch 'JAL-1199-Stk_writing' into Release_2_8_Branch
2013-01-20 jprocterMerge branch 'Dbfetch_hotfix-JAL-1238' into Release_2_8...
2013-01-18 jprocterJAL-1238 test to see if the primary Uniprot source...
2013-01-18 jprocterJAL-1238 order to place primary sources before lower...
2013-01-18 jprocterJAL-1238 method to test if DAS source is a primary...
2013-01-18 jprocterJAL-1238 tier index indicating distance of a source...
2013-01-18 jprocterMerge branch 'JAL-1254-hotfix' into Release_2_8_Branch
2013-01-18 jprocterJAL-1255 don't show 'Right click to add annotations...
2013-01-18 jprocterJAL-1254 patch for NPE in annotation renderer when...
2012-12-17 Natashatest for output a file in Stockholm format
2012-12-12 NatashaOutput accession number for file in stockholm format
2012-12-11 jprocterJAL-1217 check and avoid NPE if no datastore object...
2012-12-11 jprocterJAL-1217 report exception for service when no datastore...
2012-11-23 Natashastockholm file output code developed by Natasha Sherstneva
2012-11-21 jproctervalid URLs in website menu frame and fixed GA code
2012-11-17 jprocterMerge branch 'master' into Release_2_8_Branch
2012-11-15 Paolo Di TommasoFixed T-Coffee file scores parser to support extended...
2012-11-12 jprocterMerge branch 'Release_2_8_Branch' Release_2_8
2012-11-12 jprocterfinal tweaks to help landing page
2012-11-12 jprocterMerge branch 'Release_2_8_Branch'
2012-11-12 jprocterupdate footer for static page
2012-11-12 jprocterMerge branch 'Release_2_8_Branch'
2012-11-12 jproctertidy help
2012-11-09 jprocterproperty to configure webstart image
2012-11-09 jproctertweak file association comment and make sure webstart...
2012-11-09 jprocterpush jalview v2.8 release date to monday 12th November
2012-11-09 jprocterga tracking, footers and footer link styles
2012-11-09 jproctermore tweaking of static pages and rejigging applet...
2012-11-09 jproctertweak whats new again
2012-11-09 jproctertweaking welcome message and what's new
2012-11-09 jprocterconstructor takes settings from any existing feature...
2012-11-08 jprocterJAL-1193 ensure the 'loadedComplete' method gets called...
2012-11-08 cruisecontrolupdate installAnywhere classpath and libs for jalview 2.8
2012-11-08 jprocterupdate release notes for JAL-1202
2012-11-08 cruisecontrolJAL-1202 included examples and also added in jdas jars...
2012-11-08 jprocterremember to close input file!
2012-11-08 jproctertidy imports
2012-11-08 jprocterembed links to major features in main page
2012-11-08 jproctertweak wording
2012-11-07 jprocterpatch broken link
2012-11-07 jprocterand more tweaks.
2012-11-07 jprocterJAL-1201 more layout tweaks
2012-11-07 jprocterJAL-1201 tweak layout for applet page and allow monospa...
2012-11-07 jprocterJAL-1201 more tweaks to page layout
2012-11-07 jprocterJalview 2.8 release notes and whats new! text
2012-11-07 jprocterupdated release notes for Jalview Version 2.8
2012-11-07 jprocterJAL-1201 update pages to use new website design
2012-11-07 jprocterJAL-957 manual update to applet authorlist - need to...
2012-10-31 jprocterMerge branch 'Release_2_8_Branch' of https://source...
2012-10-31 jprocterJAL-1130 fix gif palette (arggh!)
2012-10-30 cruisecontrolJAL-1197 tweak installer more
2012-10-30 cruisecontrolJAL-1197 JAL-1198 migrate to IA2012 and new build VM
2012-10-30 jprocterJAL-1130 JAL-1197 nice installer splashscreens and...
2012-10-30 jprocterMerge branch 'Release_2_8_Branch' of https://source...
2012-10-30 jprocterJAL-1130 fireworks editable huge jalview logo in RGB
2012-10-30 jprocterJAL-1130 JAL-1197 update install anywhere installer...
2012-10-30 jprocterJAL-1130 JAL-1197 update install anywhere installer...
2012-10-30 jprocterJAL-1130 updated installAnywhere program logos
2012-10-30 jprocterJAL-1130 preserved old installAnywhere installer logo...
2012-10-29 jprocterJAL-1130 made background transparent for small logo...
2012-10-24 jprocterJAL-1193 call setLoadingFromArchiveFinished(true) for...
2012-10-24 jprocterJAL-1193 patch prevents JalviewJmolBinding from handlin...
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-04 jprocterMerge branch 'develop' into Release_2_8_Branch
2012-10-04 jprocterJAL-636 switch to simple REST interface to dbfetch...
2012-10-04 jprocteravoid importing the mapping every time we parse a unipr...
2012-10-04 jprocterJAL-636 tweak main() based test to allow DAS sources...
2012-10-04 jprocterJAL-1188 - set the user agent to Jalview Desktop/$...
2012-10-04 jprocterJAL-1064 JAL-671 make sure all buttons are disabled...
2012-10-03 jprocterformatting
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