jalview.git
2022-01-26 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch'
2022-01-18 Jim ProcterJAL-3940 errant heading in release notes.. releases/Release_2_11_1_Branch Release_2_11_1_7
2022-01-18 Jim ProcterMerge branch 'patch/r2_11_1_branch_JAL-3703_closing_fil...
2022-01-17 Jim ProcterJAL-3703 patch Windows save file test for 2.11.1 codebase patch/r2_11_1_branch_JAL-3703_closing_files
2022-01-17 Jim ProcterMerge branch 'patch/r2_11_1_branch_JAL-3703_closing_fil...
2022-01-17 Jim ProcterJAL-3940 fix issues in release notes
2022-01-17 Jim ProcterJAL-3940 bump version and update release notes - releas...
2022-01-17 Jim ProcterJAL-3940 update release notes for JAL-3702,JAL-3935...
2022-01-17 Ben SoaresJAL-3703 Test that fails in Windows only, and only...
2022-01-17 Ben SoaresJAL-3703 fix Gff3 shared InputStream with embedded...
2022-01-17 Ben Soaresclose filehandles straight after parse, without setting...
2022-01-11 Ben SoaresJAL-3937 update releases.html
2022-01-10 Ben SoaresJAL-3937 enable AIA download of intermediate certificat...
2022-01-06 Jim ProcterJAL-3934 update whats new Release_2_11_1_6
2022-01-06 Jim ProcterMerge branch 'task/JAL-3934_update_log4j_again' into...
2022-01-06 Jim ProcterJAL-3934 trigger patch release for log4j version bump
2021-12-22 Ben SoaresJAL-3934 updated log4j from 2.16.0 to 2.17.0
2021-12-22 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch'
2021-12-20 Jim ProcterJAL-3842 remove replacement tokens in html text - not... Release_2_11_1_5
2021-12-20 Jim ProcterJAL-3842 patch what’s new text
2021-12-20 Jim ProcterJAL-3842 release 2.11.1.5 release notes
2021-12-20 Jim ProcterMerge branch 'critical/JAL-3933_log4shell_mitigation...
2021-12-15 Ben SoaresJAL-3933 updated THIRDPARTYLIBS
2021-12-15 Ben SoaresJAL-3933 updated THIRDPARTYLIBS
2021-12-15 Jim ProcterJAL-3933 remove obsolete Castor logging configuration
2021-12-15 Jim ProcterJAL-3933 configure root logger console appender to...
2021-12-14 Ben SoaresJAL-3933 updated slf4j to 1.7.32
2021-12-14 Ben SoaresJAL-3933 Updated log4j jars with log4j-2.16.0 and compa...
2021-07-13 Jim ProcterJAL-3842 fix automatic what's new link for custom versi...
2021-06-30 Jim ProcterJAL-3842 JAL-3746 (need to cherry pick to develop)...
2021-06-09 Jim ProcterJAL-3842 2.11.1.5 what’s new, release notes, and versio...
2021-06-09 Jim ProcterMerge branch 'patch/JAL-3840_2_11_1_4' into releases...
2021-06-09 Jim ProcterJAL-3840 don’t update the modal residue count for gaps patch/JAL-3840_2_11_1_4
2021-06-09 Jim Procterfixes JAL-3840
2021-06-09 Jim ProcterJAL-3840 failing test - show that addGaps overflows
2021-04-26 Ben SoaresJAL-3248 Archived old README. Added new README to point...
2021-04-26 Ben SoaresJAL-3743 Fixed NullPointerExceptions happening with...
2021-04-19 Ben SoaresJAL-3833 cap the scaling used by HiDPISetting for incor...
2021-03-15 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch'
2021-03-09 Jim ProcterJAL-3816 release date updated to 9th March Release_2_11_1_4
2021-03-05 Jim ProcterJAL-3816 release date set for 8th March and updated...
2021-03-05 Jim ProcterJAL-3816 new known defects JAL-3705 and JAL-3806
2021-03-04 Jim ProcterRevert "Merge branch 'bug/JAL-3806_mappingCoversSequenc...
2021-03-04 Jim ProcterRevert "JAL-3816 release notes for JAL-3806"
2021-02-26 Jim ProcterJAL-3816 release notes for JAL-3806
2021-02-26 Jim ProcterMerge branch 'bug/JAL-3806_mappingCoversSequence' into... bug/JAL-3806_mappingCoversSequence
2021-02-26 Jim ProcterJAL-3816 JAL-3814 JAL-3813 JAL-3812 JAL-3811 JAL-3818...
2021-02-24 Jim ProcterMerge branch 'bug/JAL-3818_jmolDeadlock' into releases...
2021-02-24 Jim ProcterMerge branch 'releases/Release_2_11_1_4_debianpatches...
2021-02-12 Ben SoaresJAL-3521 High quality file icons for jalview associated... releases/Release_2_11_1_4_debianpatches
2021-02-11 gmungocJAL-3818 process Jmol callbacks in AWT thread bug/JAL-3818_jmolDeadlock
2021-02-10 Ben SoaresJAL-3521 Change grouped Jalview windows on linux taskba...
2021-02-10 Ben SoaresJAL-3521 Changed wording of INSTALLATION in source...
2021-02-08 Ben SoaresJAL-3521 Adding a build_properties into sourceDist...
2021-02-08 Ben SoaresJAL-3521 Adjusted wrapper shell script and .desktop...
2021-02-07 Jim ProcterJAL-3816 bump version number and cut release notes
2021-02-07 Jim ProcterJAL-3815 default /etc/jalview_properties under utils...
2021-02-06 Ben SoaresJAL-3251 debian build using maven, simplified build...
2021-02-06 Ben SoaresJAL-3521 Moved the debian build.gradle to utils/debian...
2021-02-05 Jim ProcterMerge branch 'task/JAL-3521_Slimmed_down_build.gradle_f...
2021-02-05 Jim ProcterMerge branch 'releases/Release_2_11_1_4_debianpatches...
2021-02-05 Jim ProcterJAL-3814 don’t automatically launch the news browser...
2021-02-05 Jim ProcterJAL-3813 NOIDENTIFIERSSERVICE preference disables jalvi...
2021-02-05 Jim ProcterJAL-3812 new argument ‘-nohtmltemplates’ and user prefe...
2021-02-05 Jim ProcterJAL-3811 document SHOW_JWS2_SERVICES user preference...
2021-02-05 Jim ProcterJAL-3814 NONEWS property
2021-02-04 gmungocJAL-3806 fix and test for one-to-many sequence mapping... bug/JAL-3806_mappingCoversCDS_reprise
2021-01-28 gmungocJAL-3806 more lax allowance (3 positions) for stop...
2021-01-26 Ben SoaresJAL-3521 Updating file opening marker to %u
2021-01-26 Ben SoaresJAL-3521 Debian mime-type and desktop helper files...
2020-11-19 Ben SoaresJAL-3521 removed unnecessary parts of the ext project... task/JAL-3521_Slimmed_down_build.gradle_for_debian
2020-11-19 Ben SoaresJAL-3521 Minimal plugins and tasks needed to run tests...
2020-10-29 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch'
2020-10-29 Jim ProcterJAL-3766 what’s new and release notes for 2.11.1.3 Release_2_11_1_3
2020-10-29 Jim ProcterJAL-3759 fix compilation error for test
2020-10-29 Jim ProcterJAL-3766 release notes for JAL-3759
2020-10-29 Jim Procter JAL-3759 exclude hidden columns when processing...
2020-10-29 Jim ProcterMerge branch 'documentation/JAL-3766_relnotes' into...
2020-10-29 Jim ProcterJAL-3766 release notes for JAL-3765 JAL-3763 JAL-3760...
2020-10-29 Jim ProcterMerge branch 'patch/JAL-3700_JAL-3748_JAL-3763_for_2_11...
2020-10-29 Ben SoaresJAL-3248 Fixed path typos in building.md/html and corre...
2020-10-29 gmungocJAL-3700 mapped sequence group includes short (or all... patch/JAL-3700_JAL-3748_JAL-3763_for_2_11_1_3
2020-10-28 Jim ProcterJAL-3725 fix tests for EMBLFlatFile parser when mapping...
2020-10-28 Jim ProcterJAL-3725 patch EMBL flat file to exclude stop codon...
2020-10-28 gmungocJAL-3725 restrict mapped virtual feature location to...
2020-10-28 gmungocJAL-3725 helper methods for computing mapped feature...
2020-10-28 gmungocJAL-3725 exclude stop codon from CDS-to-protein mapping
2020-10-28 Jim ProcterMerge branch 'bug/JAL-3760_protsTreatedAsNucleotides...
2020-10-28 Ben SoaresJAL-3248 Added step to create the eclipse files before...
2020-10-27 Jim ProcterJAL-3768 noticed failure of test when run as part of...
2020-10-27 Jim ProcterJAL-3700 JAL-3748 JAL-3763 don’t add stop codon via...
2020-10-27 Jim Procterupdate test for JAL-3763 redact shared DS sequences...
2020-10-22 gmungocJAL-3763 Javadoc, check for null, additional tests
2020-10-22 gmungocJAL-3751 only merge strictly contiguous ranges of mappings
2020-10-22 gmungocJAL-3763 test coverage for AlignedCodonFrame.markMapped...
2020-10-22 gmungocJAL-3700 JAL-3763 create datasets for test sequences
2020-10-22 gmungocJAL-3763 failsafe check for null
2020-10-22 gmungocJAL-3763 refactored getCoveringMapping for virtual...
2020-10-22 gmungocJAL-3763 always make a new dataset sequence for CDS...
2020-10-22 gmungocJAL-3700 additions and corrections to unit tests
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