jalview.git
2018-05-10 gmungocJAL-2629 adjust placement and optionality of arguments...
2018-05-10 gmungocJAL-591 show choice list with a single option
2018-05-09 gmungocJAL-2714 HMMSearch cutoff by E-Value, Score or None
2018-05-08 gmungocMerge branch 'develop' into features/mchmmer
2018-05-07 gmungocJAL-2808 ensure test setUp/tearDown alwaysRun
2018-05-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' into...
2018-05-07 Jim ProcterJAL-2960 don’t override a swing method and create infin...
2018-05-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' of source...
2018-05-04 gmungocJAL-2906 small tweaks to release notes
2018-05-04 Jim ProcterJAL-2906 2.10.4 release for 8th May 2018
2018-05-04 Jim ProcterMerge branch 'bug/JAL-2899' into releases/Release_2_10_...
2018-05-04 Jim ProcterJAL-2906 removed mention of experimental features,...
2018-05-04 Jim ProcterJAL-2976 patch NPE when trying to open Uniprot FTS
2018-05-04 Jim ProcterJAL-2929 JAL-2922 release notes
2018-05-04 Jim ProcterJAL-2976 typo in installAnywhere build for VAqua dependency
2018-05-04 Jim ProcterJAL-2960 release notes
2018-05-04 Jim ProcterJAL-2948 transfer features/annotation is now available...
2018-05-04 Jim ProcterJAL-2960 raise the structure view after adding structur...
2018-05-04 Jim ProcterJAL-2976 Vaqua fallback release notes JAL-2906
2018-05-04 Jim ProcterMerge branch 'patch/JAL-2976_vaqua4_fallback' into...
2018-05-02 Jim ProcterJAL-2976 fallback to Vaqua for Macs that don’t work...
2018-05-02 Jim ProcterJAL-2976 Vaqua(4) as a dependency
2018-05-01 Jim ProcterJAL-2899 release notes
2018-05-01 Jim ProcterJAL-2973 JAL-2974 known defects for 2.10.4 (JAL-2906)

2018-05-01 Jim ProcterJAL-2925 release notes
2018-05-01 Jim ProcterJAL-2593 JAL-2945 JAL-2952 JAL-2954 release notes for...
2018-05-01 Jim ProcterJAL-2223 JAL-2781 JAL-2780 JAL-2946 JAL-2906 release...
2018-05-01 Jim ProcterJAL-2906 reformat release notes
2018-05-01 Jim ProcterJAL-2906 typo
2018-05-01 Jim ProcterJAL-2944 revised docs and structure chooser screen...
2018-05-01 Jim ProcterJAL-2899 colouring moved from SwingWorker to a backgrou...
2018-04-30 Jim ProcterMerge branch 'bug/JAL-2899' into releases/Release_2_10_...
2018-04-30 Jim ProcterJAL-2906 release 2.10.4 on 1st May 2018
2018-04-25 Jim ProcterMerge branch 'features/JAL-2944_openStructuresInSelecte...
2018-04-24 gmungocJAL-2959 no Print dialog shown if Page Format is Cancelled
2018-04-24 gmungocJAL-2939 exit calc thread if no HMM in alignment
2018-04-24 gmungocJAL-591 use constant for Preferences key
2018-04-24 gmungocJAL-2616 unused field removed
2018-04-24 gmungocJAL-2956 unit test
2018-04-23 gmungocJAL-2956 save/restore HMMER profile to/from Jalview...
2018-04-23 gmungocJAL-2954 more efficient SearchResults.markColumns
2018-04-23 gmungocJAL-2952 set negative TempFactor values as AlignmentAnn...
2018-04-23 gmungocJAL-2957 don't validate input on arrow keys
2018-04-23 gmungocJAL-591 ensure slider hidden if text input field only
2018-04-20 gmungocJAL-591 slider scale factor now derived from min-max...
2018-04-20 gmungocJAL-591 tidy and comment code
2018-04-20 gmungocJAL-2629 tweaks to text
2018-04-20 gmungocJAL-591 OptionBox FlowLayout, tweaks to wrapping of...
2018-04-19 gmungocJAL-591 utility method renamed and slightly generalised
2018-04-18 gmungocMerge branch 'develop' into features/mchmmer
2018-04-18 gmungocMerge branch 'releases/Release_2_10_4_Branch' into...
2018-04-18 gmungocJAL-2593 render 'duplicate' features if transparency...
2018-04-18 gmungocJAL-2629 corrected cutoff parameter passing to hmmsearch
2018-04-17 gmungocMerge branch 'features/mchmmer' of https://source.jalvi...
2018-04-17 gmungocJAL-2629 choice of hmm profile now a parameter not...
2018-04-17 Mungo CarstairsJAL-2937 working Cygwin bash execution of hmmbuild...
2018-04-16 gmungocJAL-2629 JAL-2937 remove redundant is/setHMMConsensusSe...
2018-04-16 gmungocJAL-2937 use preferences for presets, simplify some...
2018-04-13 gmungocMerge branch 'features/JAL-2944_openStructuresInSelecte... features/JAL-2944_openStructuresInSelectedView
2018-04-12 gmungocJAL-2223 don't add duplicate mappings to StructureSelec...
2018-04-12 gmungocJAL-1847 minor post-review updates
2018-04-12 gmungocJAL-2944 tidies for review comments
2018-04-11 Jim ProcterJAL-2946 catch unexpected SIFTS mapping exceptions...
2018-04-09 Mungo CarstairsJAL-2937 Cygwin path preference, method refactoring
2018-04-09 Mungo CarstairsJAL-2629 more error checking
2018-04-09 Mungo CarstairsJAL-2937 extract reusable utility method
2018-04-09 Mungo CarstairsJAL-2069 typo
2018-04-09 Jim ProcterJAL-2944 ’new view’ and ‘add to view’ button rather...
2018-04-09 Jim ProcterJAL-1847 superpose checkbox in structure chooser
2018-04-09 Jim ProcterJAL-1847 JAL-2944 make superposition step a configurabl...
2018-04-06 Jim Procterfailing test for JAL-2223
2018-04-05 Jim ProcterJAL-2945 resolve model as PDB file. Need to verify...
2018-04-05 Jim ProcterJAL-2945 failing test for structure mapping
2018-04-05 Jim ProcterJAL-2945 formatting
2018-04-05 Jim ProcterJAL-2945 provide access to last highlighted results
2018-04-05 Jim ProcterJAL-2944 open selected structures in existing or a...
2018-04-05 Jim ProcterJAL-2944 combo box to pick which viewer to load structu...
2018-04-05 Jim ProcterJAL-2944 methods to check existence and get a title...
2018-04-05 Jim ProcterJAL-2944 allow StructureViewer proxy to be created...
2018-04-05 Jim ProcterJAL-2944 get viewer’s title via toString()
2018-04-05 Jim ProcterJAL-2944 expose UI update methods in api
2018-04-05 Jim ProcterJAL-2944 remove modal prompt logic and expose methods...
2018-04-05 Jim ProcterJAL-2944 pull up structure viewer discovery routine...
2018-03-30 gmungocJAL-2599 MapList from HMM nodes to consensus dataset...
2018-03-30 gmungocJAL-2629 tidy code, factory methods for param sets
2018-03-30 gmungocJAL-2629 use correct gap character, revised deletion...
2018-03-30 gmungocJAL-2629 Javadoc updates
2018-03-30 gmungocJAL-2629 combine with/without defaults in one method...
2018-03-30 gmungocJAL-2939 field/method naming more consistent
2018-03-30 gmungocJAL-2629 ensure hmm consensus sequence set on alignment...
2018-03-30 gmungocJAL-2941 'map hmm to RF' removed pending clarifications
2018-03-30 gmungocsmall tidy
2018-03-30 gmungocJAL-2938 revisions to implementation details
2018-03-30 gmungocJAL-2939 remove commented out code
2018-03-30 gmungocJAL-2599 move utility method to MappingUtils
2018-03-30 gmungocJAL-2939 simplified way of getting hmm consensus residue
2018-03-30 gmungocJAL-2629 add title to output alignment window
2018-03-30 gmungocJAL-2629 select HMM selects sequence under cursor
2018-03-30 gmungocJAL-2599 corrected test file name in unit test
2018-03-29 gmungocJAL-2907 test method renamed to match method name change
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