source.jalview.org Git - jalview.git/shortlog

git://source.jalview.org / jalview.git / shortlog

2007-04-27	amwaterhouse	Amend Features	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	ColourByStructure not ready yet	commit \| commitdiff \| tree \| snapshot
2007-04-27	jprocter	newlines in alignment properties converted to <br>	commit \| commitdiff \| tree \| snapshot
2007-04-27	jprocter	blc header lines inserted as 'comment' alignment property	commit \| commitdiff \| tree \| snapshot
2007-04-27	jprocter	parsers can generate alignment properties	commit \| commitdiff \| tree \| snapshot
2007-04-27	jprocter	getProperties returns nullk for no properties	commit \| commitdiff \| tree \| snapshot
2007-04-27	jprocter	documentation and getProperties method	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	aligned boxes	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	ThresholdIsMin available in applet	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Set black if colour null	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Alignment properties available	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	hide the initial window after selection made	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	one colour flag in annotation export	commit \| commitdiff \| tree \| snapshot
2007-04-27	jprocter	bugfix for deleted annotation undo	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Annotation gradient will use direct colours if no graph...	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Allow threshold to be min/max	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	hide annotation colouring options	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Dont colour labels	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	added/tested sort by scores menu and added basic extrac...	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	use hasScore method to test presence of score in annota...	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	added 'sort by sequence associated annotation score'	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	bug fixed basic score extraction by regex on descriptio...	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	get annotation by label string	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	fix '\0' bug from score-only positional annotation	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	score is a double, fix bugs for score only annotation...	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	double sort functions	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	total annotation score is a double for maximum precision.	commit \| commitdiff \| tree \| snapshot
2007-04-26	amwaterhouse	check for null ss character	commit \| commitdiff \| tree \| snapshot
2007-04-26	amwaterhouse	colourText = false	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	score and visible copy construction	commit \| commitdiff \| tree \| snapshot
2007-04-26	amwaterhouse	Edit seqs	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	quick fix for verbose fortranesque comments in preamble...	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	fixed bug in prefix extraction for application	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	basic methods for adding scores extracted from description	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	fix for null annotations	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	groovy support without compile-time dependency.	commit \| commitdiff \| tree \| snapshot
2007-04-26	amwaterhouse	remove should be removeElement	commit \| commitdiff \| tree \| snapshot
2007-04-26	amwaterhouse	Alignment Properties required for annotation file	commit \| commitdiff \| tree \| snapshot
2007-04-25	jprocter	moving word methods to MapList and begin bug-fix for...	commit \| commitdiff \| tree \| snapshot
2007-04-25	jprocter	getContentPane().add alignmentProperties popup.	commit \| commitdiff \| tree \| snapshot
2007-04-25	amwaterhouse	properties + colours	commit \| commitdiff \| tree \| snapshot
2007-04-25	amwaterhouse	Show scores	commit \| commitdiff \| tree \| snapshot
2007-04-25	amwaterhouse	Export annotations with properties	commit \| commitdiff \| tree \| snapshot
2007-04-25	amwaterhouse	View Properties	commit \| commitdiff \| tree \| snapshot
2007-04-25	amwaterhouse	fix recent file type bug	commit \| commitdiff \| tree \| snapshot
2007-04-25	amwaterhouse	alignmentProperties added	commit \| commitdiff \| tree \| snapshot
2007-04-25	jprocter	Functions for parsing free text properties on sequences...	commit \| commitdiff \| tree \| snapshot
2007-04-25	jprocter	transfer of residue numbering as alignment annotation	commit \| commitdiff \| tree \| snapshot
2007-04-25	jprocter	AlignmentAnnotation: added annotation score attribute...	commit \| commitdiff \| tree \| snapshot
2007-04-24	jprocter	bugfix for sequence features mapped to multiple contigs...	commit \| commitdiff \| tree \| snapshot
2007-04-24	jprocter	updated mapping for EMBL_Services_V1.1.xsd and tested...	commit \| commitdiff \| tree \| snapshot
2007-04-23	jprocter	functions that operate on references to sequences in...	commit \| commitdiff \| tree \| snapshot
2007-04-23	jprocter	distinct methods for getting references to selected...	commit \| commitdiff \| tree \| snapshot
2007-04-23	amwaterhouse	getColour method added	commit \| commitdiff \| tree \| snapshot
2007-04-23	amwaterhouse	Check for null displayCharacters	commit \| commitdiff \| tree \| snapshot
2007-04-23	amwaterhouse	Dbref fetcher takes sequences, not alignment	commit \| commitdiff \| tree \| snapshot
2007-04-23	amwaterhouse	getColour added to structures	commit \| commitdiff \| tree \| snapshot
2007-04-23	amwaterhouse	Test out new arrangement	commit \| commitdiff \| tree \| snapshot
2007-04-23	amwaterhouse	Get colour from structure added	commit \| commitdiff \| tree \| snapshot
2007-04-23	amwaterhouse	check dispalyChar is not null	commit \| commitdiff \| tree \| snapshot
2007-04-23	amwaterhouse	Check displayChar is not null	commit \| commitdiff \| tree \| snapshot
2007-04-23	amwaterhouse	Colour is null	commit \| commitdiff \| tree \| snapshot
2007-04-23	amwaterhouse	remove seqref annotations	commit \| commitdiff \| tree \| snapshot
2007-04-23	amwaterhouse	remove alignmentAnnotation added	commit \| commitdiff \| tree \| snapshot
2007-04-23	amwaterhouse	Only fetch refs for seelcted sequences	commit \| commitdiff \| tree \| snapshot
2007-04-20	jprocter	fix null annotation values	commit \| commitdiff \| tree \| snapshot
2007-04-20	jprocter	global dbref fetch option in web services menu.	commit \| commitdiff \| tree \| snapshot
2007-04-20	jprocter	value only annotation	commit \| commitdiff \| tree \| snapshot
2007-04-20	jprocter	adds annotation for display (with flag to set alignment...	commit \| commitdiff \| tree \| snapshot
2007-04-20	jprocter	annotation and seqs vectors are protected members for...	commit \| commitdiff \| tree \| snapshot
2007-04-19	jprocter	tfactor annotation description includes full sequenceID	commit \| commitdiff \| tree \| snapshot
2007-04-19	jprocter	tfactor and occupancy extracted from PDB file, and...	commit \| commitdiff \| tree \| snapshot
2007-04-19	jprocter	bugfix	commit \| commitdiff \| tree \| snapshot
2007-04-19	jprocter	fixed column selection cut/paste and self paste.	commit \| commitdiff \| tree \| snapshot
2007-04-19	jprocter	sequence associated alignment annotation copy for colum...	commit \| commitdiff \| tree \| snapshot
2007-04-19	jprocter	ensure edit command gapChar is updated and used for...	commit \| commitdiff \| tree \| snapshot
2007-04-19	jprocter	padGaps flag in copy constructor	commit \| commitdiff \| tree \| snapshot
2007-04-19	jprocter	javadoc note on padding AlignmentAnnotation to alignmen...	commit \| commitdiff \| tree \| snapshot
2007-04-19	jprocter	copying sequenceMapping, restrict(alstart/end) and...	commit \| commitdiff \| tree \| snapshot
2007-04-19	amwaterhouse	REPLACE added to edit command	commit \| commitdiff \| tree \| snapshot
2007-04-19	amwaterhouse	Only setDropTarget if Desktop is not null	commit \| commitdiff \| tree \| snapshot
2007-04-18	amwaterhouse	Validate range for all annotations	commit \| commitdiff \| tree \| snapshot
2007-04-18	amwaterhouse	Redundant code commented out	commit \| commitdiff \| tree \| snapshot
2007-04-18	amwaterhouse	hastext = false	commit \| commitdiff \| tree \| snapshot
2007-04-18	amwaterhouse	dont set seqref null if index incorrect	commit \| commitdiff \| tree \| snapshot
2007-04-18	amwaterhouse	featureGroups not null	commit \| commitdiff \| tree \| snapshot
2007-04-18	amwaterhouse	Pad gaps when annotation editing	commit \| commitdiff \| tree \| snapshot
2007-04-18	amwaterhouse	quality has text false	commit \| commitdiff \| tree \| snapshot
2007-04-18	amwaterhouse	Quality does not have text	commit \| commitdiff \| tree \| snapshot
2007-04-18	amwaterhouse	Alignment of labels and text	commit \| commitdiff \| tree \| snapshot
2007-04-18	amwaterhouse	checks for scrollbar height	commit \| commitdiff \| tree \| snapshot
2007-04-18	amwaterhouse	Disable memory checker for now	commit \| commitdiff \| tree \| snapshot
2007-04-18	amwaterhouse	adjustForAlignment on new seq ref	commit \| commitdiff \| tree \| snapshot
2007-04-18	amwaterhouse	Check values not null in copy constructor	commit \| commitdiff \| tree \| snapshot
2007-04-18	jprocter	made compileApplet and obfuscate depend on the presence...	commit \| commitdiff \| tree \| snapshot
2007-04-18	jprocter	java 1.1 compliance	commit \| commitdiff \| tree \| snapshot
2007-04-17	jprocter	bugfix for jalviewApplet run from command line.	commit \| commitdiff \| tree \| snapshot
2007-04-17	jprocter	bugfix.	commit \| commitdiff \| tree \| snapshot
2007-04-17	jprocter	jmol lib dependency for proguard and castorbinding...	commit \| commitdiff \| tree \| snapshot
2007-04-17	jprocter	use of suffix string (filename.blc#suffixstring) to...	commit \| commitdiff \| tree \| snapshot
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