jalview.git
2021-07-25 Jim ProcterJAL-3848 add compbio and jalview to direct connection...
2021-07-25 Jim ProcterJAL-3853 - tweak test again - since failed a few commit...
2021-07-25 Jim ProcterJAL-3848 update swingJS runtime and transpiler to 3.3.1
2021-07-25 Jim ProcterMerge branch 'improvement/JAL-3848_slivka_0.8' of https...
2021-07-23 Mateusz WarownyJAL-3848 Update slivka client javajs library.
2021-07-22 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress...
2021-07-22 Jim ProcterJAL-3848 enable slivka services dialog in JalviewJS
2021-07-22 Jim ProcterJAL-3853 JAL-1870 toggle to enable/disable posterior...
2021-07-22 Jim ProcterJAL-3853 JAL-1870 patch tests for annotation colour...
2021-07-22 Jim ProcterJAL-1950 patch groovy bootstrap for importing hmmer3...
2021-07-22 Jim ProcterJAL-3853 patch sequence annotation report code and...
2021-07-22 Jim ProcterJAL-3848 ensure annotation from a service gets a calcId...
2021-07-22 Jim ProcterJAL-3848 don’t include sequence limits in sequence...
2021-07-22 Jim ProcterJAL-3848 - actually test the Slivka and JABAWS disorder...
2021-07-21 Mateusz WarownyJAL-3848 print exception for failed align jobs
2021-07-21 Mateusz WarownyJAL-3848 add latest slivka-client fixes.
2021-07-09 Mateusz WarownyMerge branch 'bug/JAL-3849_aacon-parameters' into impro...
2021-07-09 Mateusz WarownyJAL-3690 Remove references to old AlignCalcManager. bug/JAL-3849_aacon-parameters
2021-07-08 Mateusz WarownyJAL-3848 SlivkaParamSet: reformat code and add service...
2021-07-08 Mateusz WarownyJAL-3848 Update slivka client library.
2021-07-08 Mateusz WarownyJAL-3849 Remove join() which blocked the ui.
2021-02-22 Mateusz WarownyMerge branch 'bug/JAL-3809_ws_params_dialog_fix' into...
2021-02-22 Mateusz WarownyMerge branch 'bug/JAL-3810_annotation_ws_stopping_abrup... bug/JAL-3809_ws_params_dialog_fix
2021-02-22 Mateusz WarownyJAL-3809 - Fixed param edit dialog for jalviewjs.
2021-02-22 Mateusz WarownyMerge branch 'feature/JAL-3690_callback-based-web-servi...
2021-02-22 MateuszMerge branch 'feature/JAL-3690_callback-based-web-servi...
2021-02-05 Mateusz WarownyJAL-3810 - Add trace method to javascript implementatio... bug/JAL-3810_annotation_ws_stopping_abruptly
2021-02-05 Mateusz WarownyJAL-3810 - Replace log.trace() calls with log.debug()
2021-01-27 MateuszJAL-3690 Introduce AlignCalcManager2 tests. feature/JAL-3690_callback-based-web-services
2021-01-22 MateuszMerge branch 'Jalview-JS/develop' into feature/JAL...
2021-01-22 MateuszJAL-3690 AlignCalcManager - add full support for onesho...
2021-01-22 MateuszJAL-3690 AACon ws menu entry fix.
2021-01-22 MateuszJAL-3690 Allow unregistered workers to be run with...
2021-01-22 MateuszJAL-3690 Fix typo in enum name in slivka client.
2021-01-22 MateuszJAL-3690 Fixed slivka wsmenu categories.
2021-01-18 MateuszMerge remote-tracking branch 'origin/merge/Jalview...
2021-01-12 Ben SoaresJAL-3789 Use j2s.config.altfileproperty in .j2s for... Jalview-JS/develop
2021-01-12 Ben SoaresJAL-3789 New swingjs for Java2Script 3.2.10 with j2s...
2020-12-18 Jim ProcterJAL-3690 recoded AWSThread to use javax.swing.Timer... merge/Jalview-JS/develop_feature/JAL-3690_callback-based-web-services
2020-12-17 Jim ProcterJAL-3690 patch out use of java.streams/spliterator...
2020-12-15 Jim ProcterJAL-3690 tweak J2S direct DB access registration for...
2020-12-15 Jim ProcterJAL-3690 direct access to slivka, compbio, jalview...
2020-12-15 Jim ProcterJAL-3690 patch out need for java.time in j2s (see https...
2020-12-15 Jim ProcterJAL-3690 patch out spinning animation for web service...
2020-12-15 Jim ProcterJAL-3690 disable proxy server for JalviewJS
2020-12-14 Jim ProcterMerge branch 'Jalview-JS/develop' into merge_js_develop
2020-12-14 Jim ProcterMerge branch 'Jalview-JS/develop_j2s_v3_2_9_j11' into...
2020-12-11 MateuszJAL-3690 Let's enable web services (seriously this...
2020-12-10 Jim ProcterJAL-3223 - update swingjs to 3.2.9-j11 Jalview-JS/develop_j2s_v3_2_9_j11
2020-11-27 Mateusz WaronwyJAL-3690 List.copyOf() workaround
2020-11-13 Mateusz WaronwyJAL-3690 separate startup and poll code in SeqAnnotatio...
2020-11-12 Mateusz WaronwyJAL-3690 - fixed state inconsistency when restarting...
2020-11-11 Mateusz WaronwyJAL-3690 partially reworked AlignCalcManager
2020-10-26 Mateusz WaronwyJAL-3690 - introduce shutdown method that cleans up...
2020-10-21 Mateusz WaronwyJAL-3690 Documentation for AlignCalcListener
2020-10-21 Mateusz WaronwyJAL-3690 Catch and notify about worker cancellation...
2020-10-21 Mateusz WaronwyJAL-3690 Fix concurrent modification exception when...
2020-10-21 Mateusz WaronwyJAL-3690 Documentation for AlignCalcManagerI2
2020-10-21 Mateusz WarownyJAL - 3690 AlignCalc rebuilt - FutureTask-based manager
2020-09-25 Ben SoaresJAL-3577 Removed default JALVIEW_VERSION from gradle...
2020-09-24 Ben SoaresJAL-3577 Quick fix adding quotation marks for findPrope...
2020-09-11 Ben SoaresJAL-3679 Added externally specified plugins dir to...
2020-07-22 Mateusz WarownyJAL-3690 changed AWSThread to use Timer instead
2020-07-20 Mateusz WarownyJAL-3690 alternative servers menu fix
2020-07-17 Mateusz WarownyJAL-3690 restore jws1 JPred
2020-07-16 Mateusz WarownyJAL-3690 switching to CompletableFuture to allow chaining
2020-07-15 Mateusz WarownyJAL-3690 mark JalviewChangeSupport as deprecated
2020-07-15 Mateusz WarownyJAL-3690 refactoring web-services discovery
2020-07-09 Mateusz WarownyMerge branch 'feature/JAL-3686_slivka_client_js_update... alpha/merge_212_JalviewJS_2112
2020-07-09 Mateusz WarownyMerge branch 'feature/JAL-3686_slivka_client_js_update...
2020-07-08 Mateusz WarownyJAL-3683 retrieve job status to output stream feature/JAL-3686_slivka_client_js_update
2020-07-08 Mateusz WarownyJAL-6386 update slivka client for j2s compatibility
2020-07-08 Mateusz WarownyMerge branch 'feature/JAL-3515-slivka-preferences'...
2020-06-30 gmungocJAL-3446 unused imports removed
2020-06-30 gmungocJAL-3648 resize annotation panel after dragging to...
2020-06-29 Jim ProcterJAL-3493 fix patch for 2.11.1_js (nb - these changes...
2020-06-29 Jim ProcterJAL-3675 2.11.1.1 release notes
2020-06-29 Jim ProcterJAL-3493 clear search highlights when escape/deselect all
2020-06-29 Jim ProcterJAL-3493 failing test - creates a highlight and column...
2020-06-18 BobHansonJAL-3659 unnecessary duplication -- test is made in...
2020-06-18 BobHansonJAL-3446 unintentially left training message in code.
2020-06-17 Jim ProcterJAL-3662 JAL-3660 JAL-3561 source formatting
2020-06-17 Jim ProcterMerge branch 'cherrypicks/JAL-3660_JAL-3561_JAL-3662_cl...
2020-06-17 Jim ProcterJAL-3660 JAL-3561 output alignment as requested file... cherrypicks/JAL-3660_JAL-3561_JAL-3662_cli_outputformat
2020-06-17 Jim ProcterJAL-3561 JAL-3660 check resolved FileFormatI instances...
2020-06-17 Jim ProcterJAL-3561 failing test verifying expected fileformat...
2020-06-16 BobHansonJAL-3659 proper headless check; skips setProperty for JS
2020-06-16 BobHansonJAL-3662 simple fix for CLI not using right format...
2020-06-16 BobHansonMerge branch 'Jalview-JS/develop' of https://source...
2020-06-16 BobHansonJAL-3446 -- YEIKS! two checkURLLinks calls!
2020-06-16 gmungocMerge branch 'Jalview-JS/develop' of https://source...
2020-06-16 gmungocJAL-3583 better handling of null or empty tooltip on...
2020-06-16 gmungocJAL-3446 defer size calculations until panel added...
2020-06-16 BobHansonJAL-3446 proper call for headless state
2020-06-16 BobHansonJAL-3446 CommandLineOperation test
2020-06-16 BobHansonJAL-3446 CommandLineOperation test
2020-06-16 BobHansonJAL-3446 CTRL-DOWN check for headless operation
2020-06-15 BobHansonMerge branch 'Jalview-JS/develop' of https://source...
2020-06-15 BobHansonJAL-3657 SwingJS HashMap.putEntries() coding mistake.
2020-06-15 soaresJAL-3658 Now only making cores from utils/jalviewjs...
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