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jalview.git
2019-03-01 Jim ProcterJAL-3192 new build-all-cores target which iterates... commit | commitdiff | tree | snapshot
2019-03-01 gmungocMerge branch 'feature/JAL-1244stretchStatusMsg' into... commit | commitdiff | tree | snapshot
2019-03-01 gmungocMerge branch 'bug/JAL-3139colocatedFeatures' into develop commit | commitdiff | tree | snapshot
2019-03-01 gmungocJAL-3154 disable reorder columns before adding to viewport commit | commitdiff | tree | snapshot
2019-03-01 gmungocMerge branch 'bug/JAL-3154tableColumnDrag' into develop commit | commitdiff | tree | snapshot
2019-03-01 gmungocMerge branch 'bug/JAL-3161annotationTooltipRange' into... commit | commitdiff | tree | snapshot
2019-03-01 gmungocMerge branch 'bug/JAL-3158selectionBroadcasts' into... commit | commitdiff | tree | snapshot
2019-03-01 gmungocMerge branch 'bug/JAL-3164complementOverview' into... commit | commitdiff | tree | snapshot
2019-03-01 gmungocMerge branch 'merge/JAL-3140' into develop commit | commitdiff | tree | snapshot
2019-03-01 gmungocJAL-3140 update for change to SequenceI api commit | commitdiff | tree | snapshot
2019-03-01 gmungocMerge branch 'feature/intervalStoreJ' into merge/JAL... commit | commitdiff | tree | snapshot
2019-03-01 gmungocJAL-3140 reduced coupling to intervalstore.jar feature/intervalStoreJ commit | commitdiff | tree | snapshot
2019-02-28 gmungocJAL-3140 confine intervalstore imports to jalview.datam... commit | commitdiff | tree | snapshot
2019-02-28 gmungocMerge branch 'bug/JAL-2420revealAllMenu' into develop commit | commitdiff | tree | snapshot
2019-02-28 gmungocMerge branch 'bug/JAL-3166npeAllRowsHidden' into develop commit | commitdiff | tree | snapshot
2019-02-28 gmungocMerge branch 'feature/JAL-3169cancelOverwrite' into... commit | commitdiff | tree | snapshot
2019-02-28 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2019-02-28 gmungocMerge branch 'feature/JAL-3143ensemblJSON' into merge... commit | commitdiff | tree | snapshot
2019-02-28 gmungocMerge remote-tracking branch 'origin/feature/JAL-3141_b... commit | commitdiff | tree | snapshot
2019-02-28 Jim ProcterMerge branch 'feature/JAL-3141_backupfiles_for211'... merge/develop_feature/JAL-3141_backupfiles_for211 commit | commitdiff | tree | snapshot
2019-02-28 gmungocJAL-3032 any url parameter not "j2s..." taken as Jalvie... Jalview-BH/JAL-3026-JAL-3063-JAXB commit | commitdiff | tree | snapshot
2019-02-27 gmungocJAL-2527 default Overview 'hide hidden' i.e. WYSIWYG commit | commitdiff | tree | snapshot
2019-02-27 gmungocJAL-2527 default Overview 'hide hidden' i.e. WYSIWYG commit | commitdiff | tree | snapshot
2019-02-27 gmungocJAL-3202 reduced scope of rendering flags commit | commitdiff | tree | snapshot
2019-02-27 gmungocJAL-3202 discard zero percentages in extracted profile commit | commitdiff | tree | snapshot
2019-02-26 gmungocJAL-3201 JAL-2386 don't pre-select 'apply to all groups' commit | commitdiff | tree | snapshot
2019-02-26 gmungocJAL-3201 group colour schemes distinct instances commit | commitdiff | tree | snapshot
2019-02-25 gmungocJAL-3032 Jalview (as JS) parse query params to main... commit | commitdiff | tree | snapshot
2019-02-25 gmungocJAL-3032 JalviewJS2 converts url query parameters to... commit | commitdiff | tree | snapshot
2019-02-25 gmungocJAL-3200 fast lookup of DSSP3 notation commit | commitdiff | tree | snapshot
2019-02-24 gmungocJAL-3198 don't recalculate group conservation for Id... commit | commitdiff | tree | snapshot
2019-02-24 gmungocJAL-3198 SequenceGroup 'bulk constructor' without dupli... commit | commitdiff | tree | snapshot
2019-02-22 gmungocJAL-2915 don't recalculate Overview on scroll to positi... commit | commitdiff | tree | snapshot
2019-02-22 gmungocJAL-2738 don't set AF as feature score commit | commitdiff | tree | snapshot
2019-02-22 Ben SoaresJAL-3141 improved message for asking whether to delete... commit | commitdiff | tree | snapshot
2019-02-21 Ben SoaresJAL-3141 Sensible refactoring for confirming deleting... commit | commitdiff | tree | snapshot
2019-02-17 Ben SoaresJAL-3141 User warning when deleting old backup files... commit | commitdiff | tree | snapshot
2019-02-15 Ben SoaresJAL-3141 re-order deletion of old files and check lastM... commit | commitdiff | tree | snapshot
2019-02-14 Ben SoaresJAL-3141 Added warning/confirmation when suffixReverse... commit | commitdiff | tree | snapshot
2019-02-14 Ben SoaresJAL-3141 Moved 'Previously saved scheme' combo box... commit | commitdiff | tree | snapshot
2019-02-12 gmungocJAL-3032 default Autosearch to off for JalviewJS commit | commitdiff | tree | snapshot
2019-02-07 gmungocJAL-3140 updated to latest intervalstore.jar commit | commitdiff | tree | snapshot
2019-02-05 hansonrlatest transpiler and runtime commit | commitdiff | tree | snapshot
2019-02-05 gmungocJAL-3032 check enough sequences selected on construction commit | commitdiff | tree | snapshot
2019-02-05 gmungocTest (passes!) for dialog message truncation commit | commitdiff | tree | snapshot
2019-02-05 gmungocJAL-3048 JS-compatible confirm dialog on delete all commit | commitdiff | tree | snapshot
2019-02-04 hansonrJSON parsing from a StringInputStream commit | commitdiff | tree | snapshot
2019-02-04 hansonrSequenceFetcher JvCacheableInputBox isJS test commit | commitdiff | tree | snapshot
2019-02-04 hansonr*new transpiler* and runtime. commit | commitdiff | tree | snapshot
2019-02-04 hansonrrefactoring for DBMODList commit | commitdiff | tree | snapshot
2019-02-04 hansonrMIG -- explicitly sets Java9 switch to true for SwingJS commit | commitdiff | tree | snapshot
2019-02-04 hansonrexplicitly sets MIG platform defaults to WINDOWS_XP commit | commitdiff | tree | snapshot
2019-02-04 hansonradds protype size to JTextArea hack for nonexistent... commit | commitdiff | tree | snapshot
2019-02-04 hansonrfixing array processing order commit | commitdiff | tree | snapshot
2019-02-04 hansonrre-transpiled MIGLayout; JS-adapted AnnotationColumnChooser commit | commitdiff | tree | snapshot
2019-02-04 hansonrTest suite try/catch reverted commit | commitdiff | tree | snapshot
2019-02-04 hansonrunused - could be trashed. commit | commitdiff | tree | snapshot
2019-02-04 hansonrMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of... commit | commitdiff | tree | snapshot
2019-02-04 gmungocMerge branch 'feature/JAL-3143ensemblJSON' into Jalview... commit | commitdiff | tree | snapshot
2019-02-04 gmungocJAL-3143 update unit test for ID -> id change feature/JAL-3143ensemblJSON commit | commitdiff | tree | snapshot
2019-02-01 hansonrfix for org.json.JSONObject writing (both in Java and... commit | commitdiff | tree | snapshot
2019-02-01 hansonrremoves unnecessary org.xml.sax; these are in SwingJS commit | commitdiff | tree | snapshot
2019-02-01 Ben SoaresJAL-3141 Slight efficiency gain in detecting backupfile... commit | commitdiff | tree | snapshot
2019-01-31 hansonrSplit pane removing title bar for JInternalFrames commit | commitdiff | tree | snapshot
2019-01-31 hansonrfixes org.json.JSONObject for fully qualified method... commit | commitdiff | tree | snapshot
2019-01-31 hansonrremoves org.json from srcjar commit | commitdiff | tree | snapshot
2019-01-30 gmungocMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of commit | commitdiff | tree | snapshot
2019-01-30 gmungocJAL-3144 don't change comma to semi-colon if not requested! commit | commitdiff | tree | snapshot
2019-01-30 hansonrwoops. commit | commitdiff | tree | snapshot
2019-01-30 hansonrMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of... commit | commitdiff | tree | snapshot
2019-01-30 hansonrFix for textarea not updating value ("value", not ... commit | commitdiff | tree | snapshot
2019-01-30 hansonrfixes unidentified Java problem commit | commitdiff | tree | snapshot
2019-01-30 gmungocJAL-3056 no export as BioJS in JalviewJS commit | commitdiff | tree | snapshot
2019-01-30 Ben SoaresJAL-3141 Enabled the 'Include backpup files' checkbox... commit | commitdiff | tree | snapshot
2019-01-29 hansonrclasspath to include test always commit | commitdiff | tree | snapshot
2019-01-29 hansonrJSON writing fix, JColorChooser (mnemonic change) fix commit | commitdiff | tree | snapshot
2019-01-29 hansonrMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of... commit | commitdiff | tree | snapshot
2019-01-29 hansonrtest package fix for List<DBRefEntry> DBrefs (untested) commit | commitdiff | tree | snapshot
2019-01-29 Ben SoaresJAL-3141 Found a good fix for updating the FileChooser... commit | commitdiff | tree | snapshot
2019-01-29 Ben SoaresJAL-3141 Found a (not ideal) fix for updating the FileC... commit | commitdiff | tree | snapshot
2019-01-29 gmungocMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of... commit | commitdiff | tree | snapshot
2019-01-29 gmungocMerge branch 'feature/JAL-3143ensemblJSON' into trialMerge commit | commitdiff | tree | snapshot
2019-01-29 gmungocJAL-3143 format alleles array for feature description commit | commitdiff | tree | snapshot
2019-01-29 hansonrFetch Sequences...PDB - all tabs working commit | commitdiff | tree | snapshot
2019-01-29 hansonrexperiment using a register buffer instead of creating... commit | commitdiff | tree | snapshot
2019-01-29 hansonrtiming notes; SwingJS for StringBuilder/Buffer commit | commitdiff | tree | snapshot
2019-01-29 hansonriterators commit | commitdiff | tree | snapshot
2019-01-29 hansonrtime check, iterators commit | commitdiff | tree | snapshot
2019-01-29 hansonrJSON moved to swingjs/json commit | commitdiff | tree | snapshot
2019-01-29 hansonrJSON code moved to swingjs.json.JSON commit | commitdiff | tree | snapshot
2019-01-29 hansonrmore iterators out; some time checks commit | commitdiff | tree | snapshot
2019-01-28 gmungocJAL-3032 revert change to tooltip StringBuilder length commit | commitdiff | tree | snapshot
2019-01-28 Ben SoaresJAL-3141 improvement on BackupFilenameParts filename... commit | commitdiff | tree | snapshot
2019-01-28 Ben SoaresJAL-3141 fixed test commit | commitdiff | tree | snapshot
2019-01-26 hansonrfinal timing checks for optimization commit | commitdiff | tree | snapshot
2019-01-26 hansonrPlatform.timecheck calls removed or commented out. commit | commitdiff | tree | snapshot
2019-01-26 hansonrremoving cyclic call commit | commitdiff | tree | snapshot
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -... commit | commitdiff | tree | snapshot
2019-01-26 hansonrtimestamp just before major refactoring in relation... commit | commitdiff | tree | snapshot
2019-01-25 Ben SoaresJAL-3141. This adds quite a lot of code to allow an... commit | commitdiff | tree | snapshot
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