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jalview.git
2017-05-12 kiramtJAL-2491 Tidies to Overview panel calls in light of... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterMerge branch 'features/JAL-2435splitScreenFont' into... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2418 broken help ref commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2435 documentation and what’s new commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2435 mention new checkbox in linked cDNA/Protein... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2435 mirror antiAlias setting between cDNA and... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2388 mention overview popup in documentation commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2388 checkbox in overview popup for applet commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterMerge branch 'features/JAL-2228_efficient_featurecounts... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2228 updated script in help docs, renamed docs... commit | commitdiff | tree | snapshot
2017-05-12 kiramtJAL-2491 Renamed comp scrolling flag for consistency... commit | commitdiff | tree | snapshot
2017-05-12 kiramtJAL-2491 Added adjustment methods to be called directly commit | commitdiff | tree | snapshot
2017-05-12 kiramtJAL-2491 Unit test updates commit | commitdiff | tree | snapshot
2017-05-12 kiramtJAL-2491 Tweaks for applet commit | commitdiff | tree | snapshot
2017-05-11 kiramtJAL-2491 First port to applet commit | commitdiff | tree | snapshot
2017-05-11 kiramtJAL-2491 First port to applet commit | commitdiff | tree | snapshot
2017-05-11 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... commit | commitdiff | tree | snapshot
2017-05-11 Jim ProcterJAL-2509 JAL-2507 allow whitespace in GS annotation... commit | commitdiff | tree | snapshot
2017-05-11 Jim ProcterJAL-2507 JAL-2509 allow whitespace==null for annotation... commit | commitdiff | tree | snapshot
2017-05-11 Jim ProcterJAL-2507 test if an annotation is ‘whitespace’ commit | commitdiff | tree | snapshot
2017-05-11 Jim ProcterJAL-2507 Annotation.EMPTY_ANNOTATION - non-null whitesp... commit | commitdiff | tree | snapshot
2017-05-11 kiramtJAL-2491 Unit tests and updates commit | commitdiff | tree | snapshot
2017-05-10 kiramtJAL-2491 Make it work with cursor movement commit | commitdiff | tree | snapshot
2017-05-10 kiramtMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-10 kiramtJAL-2522 Fix to cursor scrolling commit | commitdiff | tree | snapshot
2017-05-10 kiramtJAL-2491 Cursor scrolling commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2507 spit out tests for ‘{‘ WUSS io from ‘[‘ WUSS... commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2509 verify stockholm parser’s bracket regex is... commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2509 extend set of brackets recognised by stockholm... commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2507 JAL-2509 extend test to cover round trip of... commit | commitdiff | tree | snapshot
2017-05-09 tcofoegbuJAL-2520 improvement to download and update structure... commit | commitdiff | tree | snapshot
2017-05-09 tcofoegbuJAL-2520 unit test for improvement to download structur... commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2507 unpaired RNA marked as ‘ ‘ in Stockholm SS... commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2507 output secondary structure regardless of prese... commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2507 simplify round trip test via AppletFormatAdapter commit | commitdiff | tree | snapshot
2017-05-09 kiramtJAL-2491 Tidies and more refactoring commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2507 test for alignment+rna annotation -> Stockholm... commit | commitdiff | tree | snapshot
2017-05-09 kiramtJAL-2491 Resolved highlighting and initialisation problems commit | commitdiff | tree | snapshot
2017-05-09 tcofoegbuJAL-2465 fix to dynamically specify data source type... commit | commitdiff | tree | snapshot
2017-05-09 gmungocJAL-1632 correct i18n and NPE commit | commitdiff | tree | snapshot
2017-05-09 kiramtJAL-2388 Added checkbox to toggle hidden columns menu... commit | commitdiff | tree | snapshot
2017-05-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2491 More wrap corrections commit | commitdiff | tree | snapshot
2017-05-08 gmungocJAL-1933 Spanish tooltips for annotation commit | commitdiff | tree | snapshot
2017-05-08 gmungocJAL-1632 i18n for warning messages commit | commitdiff | tree | snapshot
2017-05-08 gmungocMerge remote-tracking branch 'origin/bug/JAL-2515'... commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2491 Tweaks to avoid scroll problems at bottom... commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2515 Id panel in applet updated for NPE on urlProvider bug/JAL-2515 commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2512 And corresponding test bug/JAL-2512 commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2512 And applet commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2512 Fix to show non-gap positions in None colour... commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2491 Started moving other scrolling fns into viewpo... commit | commitdiff | tree | snapshot
2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScree... commit | commitdiff | tree | snapshot
2017-05-05 gmungocJAL-964 JAL-2510 update Feature Settings from Amend... commit | commitdiff | tree | snapshot
2017-05-05 kiramtMerge remote-tracking branch commit | commitdiff | tree | snapshot
2017-05-05 kiramtJAL-2491 Scrolling and interaction with overview/find... commit | commitdiff | tree | snapshot
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges commit | commitdiff | tree | snapshot
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into commit | commitdiff | tree | snapshot
2017-05-05 kiramtJAL-2491 More working split panel + new scrolling commit | commitdiff | tree | snapshot
2017-05-04 gmungocJAL-2506 allow graduated colour as default in new Seque... commit | commitdiff | tree | snapshot
2017-05-04 gmungocJAL-2510 ensure modified feature type is displayed commit | commitdiff | tree | snapshot
2017-05-04 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-04 gmungocJAL-2504 allow feature type to be specified for Create... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'develop' into features/JAL-2228_efficient... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholmoutput... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterJAL-1656 make RNAML->Stockholm round trip test pass... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterJAL-2507 JAL-2509 allow differences in visibility of... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterJAL-2507 JAL-2509 new assert to compare secondary struc... commit | commitdiff | tree | snapshot
2017-05-04 Jim Procterfix for JAL-2509 - don’t replace all bracket types... commit | commitdiff | tree | snapshot
2017-05-04 Jim Procterfix for JAL-2507 - resolve stockholm per residue annota... commit | commitdiff | tree | snapshot
2017-05-04 tcofoegbuMerge branch 'features/JAL-2473_set-minimium-dimensions... commit | commitdiff | tree | snapshot
2017-05-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into... commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2393 JAL-2416 refresh the score model menu when... features/JAL-2393customMatrices commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2503 show threshold slider for quantitative annotat... commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2503 AlignmentAnnotation.isQuantitative() test commit | commitdiff | tree | snapshot
2017-05-03 kiramtJAL-2491 Tidies commit | commitdiff | tree | snapshot
2017-05-03 gmungocJAL-2246 basic sanity test of fetching example accessions commit | commitdiff | tree | snapshot
2017-05-03 kiramtJAL-2491 Wrapped panel scrolling commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterMerge branch 'features/JAL-2432_annotbypercent' into... commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-1933 JAL-2501 i18n for all auto calculated descriptions features/JAL-2432_annotbypercent commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-1933 show occupancy in tooltip for row commit | commitdiff | tree | snapshot
2017-05-03 gmungocJAL-2246 test a Uniprot fetch commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2432 honour percentage checkbox when entering value... commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2432 applet: only enable percent checkbox when... commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2432 percentage checkbox follows threshold value... commit | commitdiff | tree | snapshot
2017-05-03 gmungocJAL-2105 Ensembl REST now at 5.0 commit | commitdiff | tree | snapshot
2017-05-03 gmungocJAL-2485 JAL-2246 test Uniprot FTS summary commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2432 recover state for ‘display percentage’ checkbox commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2432 simplify code commit | commitdiff | tree | snapshot
2017-05-03 kiramtJAL-2491 sort of working overview/find interaction... commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-1632 validate CalculationChooser when selection... commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-1632 enable/disable CalculationChooser buttons... commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-1632 compare size of input against minimums for... commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-1632 OK->Calculate, Cancel->Close buttons commit | commitdiff | tree | snapshot
2017-05-02 Jim ProcterJAL-1632 removed ‘tree’ option and changed dialog layout commit | commitdiff | tree | snapshot
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