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jalview.git
2017-05-18 gmungocJAL-2543 html-encode quote characters in feature descri... commit | commitdiff | tree | snapshot
2017-05-18 gmungocJAL-2490 retrieve visible features only commit | commitdiff | tree | snapshot
2017-05-18 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-05-18 gmungocJAL-2541 initial unit tests for edit cut relocate features commit | commitdiff | tree | snapshot
2017-05-18 gmungocJAL-2541 fix to initSeqFrom (and minor code tidy);... commit | commitdiff | tree | snapshot
2017-05-18 kiramtJAL-2256 Corrected AllCols/Rows iterator behaviour... bug/JAL-2256 commit | commitdiff | tree | snapshot
2017-05-18 Jim ProcterJAL-2418 remove explicit test suite stats commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterMerge branch 'develop' into documentation/JAL-2418_rele... commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterMerge branch 'bug/JAL-2510amendFeatures' into develop commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterJAL-2447 add links to issues.jalview.org for experiment... commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterJAL-2447 experimental section in ‘Whats New’ commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterJAL-2447 JAL-2295 JAL-2296 documenting as experimental... commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterMerge branch 'develop' into documentation/JAL-2418_rele... commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterMerge branch 'features/JAL-2447experimentalFlag' into... commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterJAL-2418 release notes commit | commitdiff | tree | snapshot
2017-05-17 gmungocJAL-2504 use (and update) defaults for new feature... commit | commitdiff | tree | snapshot
2017-05-17 gmungocMerge branch 'develop' into bug/JAL-2510amendFeatures commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterJAL-2418 release notes commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterJAL-384 documentation on custom colours groovy examples commit | commitdiff | tree | snapshot
2017-05-16 gmungocJAL-2505 unreachable code (for many years) removed commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterJAL-384 - groovy scripts for conserved/unconserved... commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterJAL-2418 release notes commit | commitdiff | tree | snapshot
2017-05-16 kiramtJAL-2536 Overview window sizing not subject to min... bug/JAL-2536 commit | commitdiff | tree | snapshot
2017-05-16 gmungocJAL-2505 refactored method removed commit | commitdiff | tree | snapshot
2017-05-16 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-05-16 gmungocJAL-2505 set helix number as feature group in SequenceF... commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterJAL-2418 JAL-2316 added to new features commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterJAL-2316 tweaking docs and links in help commit | commitdiff | tree | snapshot
2017-05-16 gmungocJAL-2517 restore complex colour scheme on Cancel in... bug/JAL-2517cancelAppletColour commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterJAL-2418 release 2.10.2 release notes template commit | commitdiff | tree | snapshot
2017-05-16 Jim Procteralternative patch for JAL-2339 readability in java... commit | commitdiff | tree | snapshot
2017-05-16 gmungocJAL-2403 simplify instantiation / configuration of... commit | commitdiff | tree | snapshot
2017-05-16 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-05-16 kiramtJAL-2522 Missed fix to applet commit | commitdiff | tree | snapshot
2017-05-16 gmungocJAL-2505 refactor to set type and group in SequenceFeat... commit | commitdiff | tree | snapshot
2017-05-16 gmungocJAL-2525 put in missing "transcript" feature type commit | commitdiff | tree | snapshot
2017-05-16 kiramtJAL-2388 Rationalised hashCode method in HiddenColumns commit | commitdiff | tree | snapshot
2017-05-16 gmungocJAL-2505 additional tests/asserts prior to refactoring commit | commitdiff | tree | snapshot
2017-05-16 kiramtMerge branch 'develop' into bug/JAL-2491 commit | commitdiff | tree | snapshot
2017-05-16 kiramtJAL-2491 Better merge commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... commit | commitdiff | tree | snapshot
2017-05-16 gmungocJAL-2505 set SequenceFeature group in constructor commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterJAL-2507 fix test: knockon from capitalisation on secon... bug/JAL-2507_rnasecstrstockholm commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterJAL-2311 disable and relocate Jared service tests to... commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterJAL-2507 capitalisation for annotation lines generated... commit | commitdiff | tree | snapshot
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterJAL-2507 case insensitive recognition of annotation... commit | commitdiff | tree | snapshot
2017-05-15 gmungocJAL-2532 new feature types and colour changes from... commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterJAL-2507 - required callers to specify exact ignore... commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterJAL-2535 quick hack to implement posterior probabilitie... commit | commitdiff | tree | snapshot
2017-05-15 tcofoegbuJAL-2520 improvement to use URL leaf name for creating... commit | commitdiff | tree | snapshot
2017-05-15 tcofoegbuJAL-2533 improvement to prune off file extension when... commit | commitdiff | tree | snapshot
2017-05-15 kiramtMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-15 kiramtJAL-2388 Add missed optimisation commit | commitdiff | tree | snapshot
2017-05-15 kiramtJAL-2491 Better merge but not quite right yet commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterMerge branch 'features/JAL-2376_add-horizontal-bar... commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterJAL-2371 create a default ResidueShader when constructi... commit | commitdiff | tree | snapshot
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-05-15 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2017-05-15 gmungocJAL-2490 use findFeatures() for efficient feature overl... commit | commitdiff | tree | snapshot
2017-05-15 kiramtJAL-2491 Tests commit | commitdiff | tree | snapshot
2017-05-15 kiramtJAL-2491 Tidies commit | commitdiff | tree | snapshot
2017-05-15 gmungocJAL-2480 redundant code (from merge?) removed commit | commitdiff | tree | snapshot
2017-05-15 gmungocJAL-2480 redundant code removed commit | commitdiff | tree | snapshot
2017-05-12 kiramtJAL-2491 Tidy commit | commitdiff | tree | snapshot
2017-05-12 kiramtJAL-2491 Tidies to Overview panel calls in light of... commit | commitdiff | tree | snapshot
2017-05-12 gmungocJAL-2490 performant findFeaturesAtRes commit | commitdiff | tree | snapshot
2017-05-12 gmungocJAL-2483 efficient lookup of feature types and groups... commit | commitdiff | tree | snapshot
2017-05-12 gmungocJAL-2525 get sequence features for Ontology term(s... commit | commitdiff | tree | snapshot
2017-05-12 gmungocJAL-2480 more efficient contains check on add; tidied... commit | commitdiff | tree | snapshot
2017-05-12 gmungocJAL-2480 java.util.RangeComparator renamed IntRangeComp... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterMerge branch 'features/JAL-2435splitScreenFont' into... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2418 broken help ref commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2435 documentation and what’s new commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2435 mention new checkbox in linked cDNA/Protein... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2435 mirror antiAlias setting between cDNA and... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2388 mention overview popup in documentation commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2388 checkbox in overview popup for applet commit | commitdiff | tree | snapshot
2017-05-12 gmungocJAL-2480 efficient test for features present on sequence commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterMerge branch 'features/JAL-2228_efficient_featurecounts... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2228 updated script in help docs, renamed docs... commit | commitdiff | tree | snapshot
2017-05-12 gmungocJAL-2480 renamed java.util.RangeComparator to IntRangeC... commit | commitdiff | tree | snapshot
2017-05-12 kiramtJAL-2491 Renamed comp scrolling flag for consistency... commit | commitdiff | tree | snapshot
2017-05-12 kiramtJAL-2491 Added adjustment methods to be called directly commit | commitdiff | tree | snapshot
2017-05-12 kiramtJAL-2491 Unit test updates commit | commitdiff | tree | snapshot
2017-05-12 kiramtJAL-2491 Tweaks for applet commit | commitdiff | tree | snapshot
2017-05-11 kiramtJAL-2491 First port to applet commit | commitdiff | tree | snapshot
2017-05-11 kiramtJAL-2491 First port to applet commit | commitdiff | tree | snapshot
2017-05-11 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... commit | commitdiff | tree | snapshot
2017-05-11 Jim ProcterJAL-2509 JAL-2507 allow whitespace in GS annotation... commit | commitdiff | tree | snapshot
2017-05-11 Jim ProcterJAL-2507 JAL-2509 allow whitespace==null for annotation... commit | commitdiff | tree | snapshot
2017-05-11 Jim ProcterJAL-2507 test if an annotation is ‘whitespace’ commit | commitdiff | tree | snapshot
2017-05-11 Jim ProcterJAL-2507 Annotation.EMPTY_ANNOTATION - non-null whitesp... commit | commitdiff | tree | snapshot
2017-05-11 kiramtJAL-2491 Unit tests and updates commit | commitdiff | tree | snapshot
2017-05-10 kiramtJAL-2491 Make it work with cursor movement commit | commitdiff | tree | snapshot
2017-05-10 kiramtMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
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