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2017-08-14 Jim ProcterJAL-2335 choose appropriate alphabet for filtering... commit | commitdiff | tree | snapshot
2017-08-14 Jim ProcterJAL-2335 source formatting commit | commitdiff | tree | snapshot
2017-08-14 Jim ProcterJAL-2335 filterNonStandardResidues configurable for... commit | commitdiff | tree | snapshot
2017-08-14 TZVanaaltenJAL-2629 remove redundant options from HMMER menu commit | commitdiff | tree | snapshot
2017-08-14 TZVanaaltenJAL-2629 add validation for HMMER path commit | commitdiff | tree | snapshot
2017-08-14 TZVanaaltenJAL-2629 fix incorrect gap insertions on HMM sequence commit | commitdiff | tree | snapshot
2017-08-14 Jim ProcterMerge branch 'patch/JAL-2116_java9' into develop commit | commitdiff | tree | snapshot
2017-08-14 Jim ProcterMerge branch 'patch/JAL-2116_java9' into releases/Relea... commit | commitdiff | tree | snapshot
2017-08-14 Jim ProcterJAL-2116 switch to java.se.ee https://bugs.openjdk... commit | commitdiff | tree | snapshot
2017-08-14 Jim ProcterMerge branch 'develop' into releases/Release_2_10_2_Branch commit | commitdiff | tree | snapshot
2017-08-14 Jim ProcterMerge branch 'patch/JAL-2663_filterAACons' into develop commit | commitdiff | tree | snapshot
2017-08-14 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2017-08-14 Jim ProcterJAL-2663 flag and filter to exclude non-standard amino... commit | commitdiff | tree | snapshot
2017-08-14 Jim ProcterJAL-2663 source formatting commit | commitdiff | tree | snapshot
2017-08-13 TZVanaaltenJAL-2629 fix issue where trim termini setting would... commit | commitdiff | tree | snapshot
2017-08-13 TZVanaaltenJAL-2629 hmmalign can now be run from the sequence... commit | commitdiff | tree | snapshot
2017-08-13 TZVanaaltenJAL-2629 add force alphabet type for HMMER commands commit | commitdiff | tree | snapshot
2017-08-13 TZVanaaltenJAL-2629 fix issue where HMM sequences would be too... commit | commitdiff | tree | snapshot
2017-08-13 TZVanaaltenJAL-2629 add HMMER tab in preferences menu commit | commitdiff | tree | snapshot
2017-08-11 TZVanaaltenJAL-2629 delete unnecessary buffer files for hmmer... commit | commitdiff | tree | snapshot
2017-08-11 TZVanaaltenJAL-2629 add ability to build a HMM from a group commit | commitdiff | tree | snapshot
2017-08-11 TZVanaaltenJAL-2629 add ability to select HMMs commit | commitdiff | tree | snapshot
2017-08-11 TZVanaaltenJAL-2599 HMMs can now be dropped onto the desktop commit | commitdiff | tree | snapshot
2017-08-10 Jim ProcterMerge branch 'patch/JAL-2116_java9' into releases/Relea... commit | commitdiff | tree | snapshot
2017-08-10 Jim ProcterJAL-2116 try '=' syntax jigsaw-dev.1059479.n5.nabble... commit | commitdiff | tree | snapshot
2017-08-10 Jim ProcterMerge branch 'patch/JAL-2116_java9' into releases/Relea... commit | commitdiff | tree | snapshot
2017-08-10 Jim ProcterJAL-2116 test java 9 only JNLP launch commit | commitdiff | tree | snapshot
2017-08-10 Jim ProcterMerge branch 'patch/JAL-2116_java9' into releases/Relea... commit | commitdiff | tree | snapshot
2017-08-10 Jim ProcterJAL-2116 explicit replace j2se element with a java9... commit | commitdiff | tree | snapshot
2017-08-10 TZVanaaltenJAL-2629 hmmalign now correctly creates a new frame commit | commitdiff | tree | snapshot
2017-08-10 Jim ProcterMerge branch 'patch/JAL-2116_java9' into releases/Relea... commit | commitdiff | tree | snapshot
2017-08-10 Jim ProcterJAL-2116 java9 modules dependency for JNLP file commit | commitdiff | tree | snapshot
2017-08-10 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-08-10 gmungocJAL-2660 used saved value of ignoreGapsInConsensus... commit | commitdiff | tree | snapshot
2017-08-10 tzvanaaltenMerge branch 'features/hmmer' of https://source.jalview... commit | commitdiff | tree | snapshot
2017-08-10 tzvanaaltenJAL-2629 fix files permission issue on Mac commit | commitdiff | tree | snapshot
2017-08-10 Jim ProcterMerge branch 'develop' into releases/Release_2_10_2_Branch commit | commitdiff | tree | snapshot
2017-08-10 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-08-10 Jim ProcterJAL-2418 set final release date to 15th August 2017... commit | commitdiff | tree | snapshot
2017-08-10 Jim ProcterJAL-2418 typo in release notes commit | commitdiff | tree | snapshot
2017-08-10 Jim ProcterJAL-2418 known defect for JAL-2321 in release notes commit | commitdiff | tree | snapshot
2017-08-10 Jim ProcterJAL-2418 reorganised release notes to topic sections... commit | commitdiff | tree | snapshot
2017-08-09 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-08-09 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-08-09 Jim ProcterJAL-2418 JAL-2398 JAL-2397 simpler documentation for... commit | commitdiff | tree | snapshot
2017-08-09 Jim ProcterMerge branch 'develop' into releases/Release_2_10_2_Branch commit | commitdiff | tree | snapshot
2017-08-09 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-08-09 Jim ProcterJAL-2397 JAL-2398 documentation for reinstating legacy... commit | commitdiff | tree | snapshot
2017-08-09 Jim ProcterJAL-2426 Rfam download suffix commit | commitdiff | tree | snapshot
2017-08-09 Jim ProcterJAL-2426 JAL-1270 report Xfam download URL used if... commit | commitdiff | tree | snapshot
2017-08-09 Jim ProcterJAL-2425 raw stockholm download URLs commit | commitdiff | tree | snapshot
2017-08-09 Jim ProcterJAL-1270 testProps should also enable debug logging commit | commitdiff | tree | snapshot
2017-08-09 Jim ProcterJAL-2425 test for alignment metadata retrieved from... commit | commitdiff | tree | snapshot
2017-08-09 Jim ProcterJAL-2425 remove overloaded getSequenceRecords method... commit | commitdiff | tree | snapshot
2017-08-09 TZVanaaltenJAL-2599 fix for issue where info annot would not display commit | commitdiff | tree | snapshot
2017-08-09 tzvanaaltenJAL-2599 fix for issue where info annot would not display commit | commitdiff | tree | snapshot
2017-08-09 Jim ProcterJAL-2418 release notes commit | commitdiff | tree | snapshot
2017-08-09 TZVanaaltenJAL-2599 add uniref 50 hmm example commit | commitdiff | tree | snapshot
2017-08-09 TZVanaaltenJAL-2629 buffers are now temporary files commit | commitdiff | tree | snapshot
2017-08-09 TZVanaaltenJAL-2629 removed unnecessary exception throws from... commit | commitdiff | tree | snapshot
2017-08-09 TZVanaaltenJAL-2629 disable AAFrequencyTest compilation error commit | commitdiff | tree | snapshot
2017-08-09 Jim ProcterJAL-2418 more release notes commit | commitdiff | tree | snapshot
2017-08-09 Jim ProcterJAL-2418 JAL-2611 and rejigged overview documentation commit | commitdiff | tree | snapshot
2017-08-09 Jim ProcterMerge branch 'bug/JAL-2634' into develop commit | commitdiff | tree | snapshot
2017-08-09 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-08-08 TZVanaaltenJAL-2616 fix allowing clan sorting to work commit | commitdiff | tree | snapshot
2017-08-08 TZVanaaltenJAL-2599 fix for index issue on node lookup commit | commitdiff | tree | snapshot
2017-08-08 TZVanaaltenJAL-2629 add ability to select hmmer binaries folder commit | commitdiff | tree | snapshot
2017-08-08 gmungocJAL-2560 alternative fix (reinstate lost line of code) commit | commitdiff | tree | snapshot
2017-08-08 gmungocJAL-2649 JAL-2650 wait for Conservation calc to complet... commit | commitdiff | tree | snapshot
2017-08-08 gmungocJAL-2650 configure new viewport settings before selecti... commit | commitdiff | tree | snapshot
2017-08-07 TZVanaaltenJAL-2629 fixed hmmalign failing due to differing sequen... commit | commitdiff | tree | snapshot
2017-08-07 TZVanaaltenJAL-2629 current hmmer commands are now executed in... commit | commitdiff | tree | snapshot
2017-08-07 Jim ProcterMerge branch 'bug/JAL-2592userDefinedScheme' into develop commit | commitdiff | tree | snapshot
2017-08-07 Jim ProcterMerge branch 'develop' into releases/Release_2_10_2_Branch commit | commitdiff | tree | snapshot
2017-08-07 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-08-07 Jim ProcterJAL-2418 JAL-2468 known issue commit | commitdiff | tree | snapshot
2017-08-07 Jim ProcterJAL-2482 JAL-2487 documented in release notes commit | commitdiff | tree | snapshot
2017-08-07 Jim ProcterJAL-2482 release notes commit | commitdiff | tree | snapshot
2017-08-07 Jim ProcterJAL-2418 release notes formatting commit | commitdiff | tree | snapshot
2017-08-07 Jim ProcterJAL-2418 release notes commit | commitdiff | tree | snapshot
2017-08-07 Jim ProcterJAL-2418 typo and formatting of search.html commit | commitdiff | tree | snapshot
2017-08-07 Jim ProcterJAL-1648 documentation of search history for Find command commit | commitdiff | tree | snapshot
2017-08-07 Jim ProcterJAL-2418 reformatting and scripting section in what... commit | commitdiff | tree | snapshot
2017-08-07 Jim ProcterJAL-2418 release notes commit | commitdiff | tree | snapshot
2017-08-07 Jim ProcterJAL-2418 formatting commit | commitdiff | tree | snapshot
2017-08-07 Jim ProcterJAL-1476 JAL-2418 insufficient columns for superpositio... commit | commitdiff | tree | snapshot
2017-08-04 TZVanaaltenJAL-2599 fixed information annotation buttons not working commit | commitdiff | tree | snapshot
2017-08-04 TZVanaaltenJAL-2629 hmmbuild now runs on alignments of different... commit | commitdiff | tree | snapshot
2017-08-04 TZVanaaltenJAL-2629 multiple HMMs can now be dropped onto an alignment commit | commitdiff | tree | snapshot
2017-08-04 Jim ProcterJAL-2418 JAL-1632 JAL-2416 calculations dialog document... commit | commitdiff | tree | snapshot
2017-08-04 Jim ProcterJAL-2418 new features in release notes JAL-1933 JAL... commit | commitdiff | tree | snapshot
2017-08-04 Jim ProcterJAL-2418 release notes commit | commitdiff | tree | snapshot
2017-08-04 Jim ProcterJAL-1551 JAL-2418 reformat releases.html to remove... commit | commitdiff | tree | snapshot
2017-08-04 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-08-04 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-08-04 Jim ProcterMerge branch 'develop' into documentation/JAL-2418_rele... commit | commitdiff | tree | snapshot
2017-08-04 gmungocJAL-2500 JAL-2365 lightGray changed to lightgray for... commit | commitdiff | tree | snapshot
2017-08-04 gmungocJAL-2500 JAL-2365 lightGray changed to gray in example... commit | commitdiff | tree | snapshot
2017-08-03 Jim ProcterMerge branch 'develop' into releases/Release_2_10_2_Branch commit | commitdiff | tree | snapshot
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