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jalview.git
2022-01-17 Jim ProcterJAL-3940 update 2.11.2 release notes for 2.11.1.7 patch... commit | commitdiff | tree | snapshot
2022-01-17 Jim ProcterJAL-3940 bump version and update release notes - releas... commit | commitdiff | tree | snapshot
2022-01-17 Jim ProcterJAL-3940 update release notes for JAL-3702,JAL-3935... commit | commitdiff | tree | snapshot
2022-01-17 Ben SoaresJAL-3703 Test that fails in Windows only, and only... commit | commitdiff | tree | snapshot
2022-01-17 Ben SoaresJAL-3703 fix Gff3 shared InputStream with embedded... commit | commitdiff | tree | snapshot
2022-01-17 Ben Soaresclose filehandles straight after parse, without setting... commit | commitdiff | tree | snapshot
2022-01-17 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-01-17 Jim ProcterJAL-3746 possible release date 1st Feb 2022 commit | commitdiff | tree | snapshot
2022-01-17 Jim ProcterJAL-3746 Release notes for patch JAL-3702 JAL-3915 commit | commitdiff | tree | snapshot
2022-01-17 Jim ProcterMerge branch 'bug/JAL-3703_saving_a_file_in_Windows_10_... commit | commitdiff | tree | snapshot
2022-01-12 Ben SoaresJAL-3703 Test that fails in Windows only, and only... commit | commitdiff | tree | snapshot
2022-01-11 Ben SoaresJAL-3703 fix Gff3 shared InputStream with embedded... commit | commitdiff | tree | snapshot
2022-01-11 Ben Soaresclose filehandles straight after parse, without setting... commit | commitdiff | tree | snapshot
2022-01-11 Ben SoaresJAL-3937 update releases.html commit | commitdiff | tree | snapshot
2022-01-10 Ben SoaresJAL-3937 enable AIA download of intermediate certificat... commit | commitdiff | tree | snapshot
2022-01-10 Ben SoaresJAL-3937 enable AIA download of intermediate certificat... commit | commitdiff | tree | snapshot
2022-01-06 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-01-06 Jim ProcterJAL-3746 update release history for 2.11.1.5 and 2... commit | commitdiff | tree | snapshot
2022-01-06 Jim ProcterJAL-3934 update whats new Release_2_11_1_6 commit | commitdiff | tree | snapshot
2022-01-06 Jim ProcterMerge branch 'critical/JAL-3933_log4j_update_for_develo... commit | commitdiff | tree | snapshot
2022-01-06 Jim ProcterMerge branch 'task/JAL-3934_update_log4j_again' into... commit | commitdiff | tree | snapshot
2022-01-06 Jim ProcterJAL-3934 trigger patch release for log4j version bump commit | commitdiff | tree | snapshot
2021-12-22 Ben SoaresMerge branch 'develop' into critical/JAL-3933_log4j_upd... commit | commitdiff | tree | snapshot
2021-12-22 Ben SoaresJAL-3934 updated log4j from 2.16.0 to 2.17.0 commit | commitdiff | tree | snapshot
2021-12-22 Ben SoaresJAL-3934 updated log4j from 2.16.0 to 2.17.0 commit | commitdiff | tree | snapshot
2021-12-22 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch' commit | commitdiff | tree | snapshot
2021-12-20 Jim ProcterJAL-3842 remove replacement tokens in html text - not... Release_2_11_1_5 commit | commitdiff | tree | snapshot
2021-12-20 Jim ProcterJAL-3842 patch what’s new text commit | commitdiff | tree | snapshot
2021-12-20 Jim ProcterJAL-3842 release 2.11.1.5 release notes commit | commitdiff | tree | snapshot
2021-12-20 Jim ProcterMerge branch 'critical/JAL-3933_log4shell_mitigation... commit | commitdiff | tree | snapshot
2021-12-15 Ben SoaresJAL-3933 updated THIRDPARTYLIBS commit | commitdiff | tree | snapshot
2021-12-15 Ben SoaresJAL-3933 updated THIRDPARTYLIBS commit | commitdiff | tree | snapshot
2021-12-15 Ben SoaresJAL-3933 updated THIRDPARTYLIBS commit | commitdiff | tree | snapshot
2021-12-15 Ben SoaresJAL-3933 updated THIRDPARTYLIBS commit | commitdiff | tree | snapshot
2021-12-15 Jim ProcterJAL-3933 remove obsolete Castor logging configuration commit | commitdiff | tree | snapshot
2021-12-15 Jim ProcterJAL-3933 configure root logger console appender to... commit | commitdiff | tree | snapshot
2021-12-15 Jim ProcterJAL-3933 remove obsolete Castor logging configuration commit | commitdiff | tree | snapshot
2021-12-15 Jim ProcterJAL-3933 configure root logger console appender to... commit | commitdiff | tree | snapshot
2021-12-14 Ben SoaresJAL-3933 updated log4j and slf4j jars with log4j1.2... commit | commitdiff | tree | snapshot
2021-12-14 Ben SoaresJAL-3933 updated slf4j to 1.7.32 commit | commitdiff | tree | snapshot
2021-12-14 Ben SoaresJAL-3933 Updated log4j jars with log4j-2.16.0 and compa... commit | commitdiff | tree | snapshot
2021-12-13 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2021-12-13 Jim ProcterJAL-3829 isCanonical should by default be false - ensur... commit | commitdiff | tree | snapshot
2021-12-13 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2021-12-13 Jim ProcterJAL-3855 JAL-3829 don’t need to make up alphafold model... commit | commitdiff | tree | snapshot
2021-12-13 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2021-12-13 Jim ProcterJAL-3929 preserve lowercase pdbid in group name for... commit | commitdiff | tree | snapshot
2021-12-08 Jim ProcterMerge branch 'to_merge/r2_11_2/JAL-3904_improved_alignp... commit | commitdiff | tree | snapshot
2021-12-08 Jim ProcterJAL-3551 pymol docs - work in progress commit | commitdiff | tree | snapshot
2021-12-08 Jim ProcterJAL-3929 don’t use the url encoded pdbId in feature... commit | commitdiff | tree | snapshot
2021-12-08 Jim ProcterJAL-3616 update messages/tooltips/menu items to use... commit | commitdiff | tree | snapshot
2021-12-08 Jim ProcterJAL-3551 JAL-3931 view pymol commands/responses in... commit | commitdiff | tree | snapshot
2021-12-08 Jim ProcterJAL-3931 remove % and - from ids so Pymol doesn’t strip... commit | commitdiff | tree | snapshot
2021-12-08 Jim ProcterJAL-3929 URLencode pdbid to remove problematic characte... commit | commitdiff | tree | snapshot
2021-12-07 Ben SoaresJAL-3930 Added a customizedId="JALVIEW" to launcher... commit | commitdiff | tree | snapshot
2021-12-07 Ben SoaresJAL-3930 Added a customizedId="JALVIEW" to launcher... commit | commitdiff | tree | snapshot
2021-12-02 Jim ProcterJAL-3904 use new AlignPanel API method commit | commitdiff | tree | snapshot
2021-12-02 Jim ProcterJAL-3904 simple method to make an alignPanel the curren... commit | commitdiff | tree | snapshot
2021-11-29 Ben SoaresJAL-3594 correct Jalview Develop logo SVG added in... commit | commitdiff | tree | snapshot
2021-11-19 Jim ProcterJAL-3926 disable autosearch by default commit | commitdiff | tree | snapshot
2021-11-16 Ben SoaresJAL-3553 added customized labels for install4j output.txt commit | commitdiff | tree | snapshot
2021-11-08 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2021-11-08 Jim ProcterJAL-3855 verify pdb suffix is preserved when locally... commit | commitdiff | tree | snapshot
2021-11-08 Jim ProcterJAL-3855 JAL-1731 reuse the StructureViewer.fetchPdbFil... commit | commitdiff | tree | snapshot
2021-11-08 Jim ProcterJAL-3855 try harder to ignore DNA/RNA only structures... commit | commitdiff | tree | snapshot
2021-11-08 Jim ProcterJAL-3921 wait around until session file has been written commit | commitdiff | tree | snapshot
2021-11-05 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2021-11-05 Jim ProcterJAL-3829 remove duplicate IDs in 3DBeacons generated... commit | commitdiff | tree | snapshot
2021-11-05 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2021-11-05 Jim ProcterJAL-3829 format and tidy up unused code commit | commitdiff | tree | snapshot
2021-11-05 Jim ProcterJAL-3919 use model format field to ensure we get the... commit | commitdiff | tree | snapshot
2021-11-05 Jim ProcterJAL-3875 fully reset filter combo-box when fetch 3d... commit | commitdiff | tree | snapshot
2021-11-05 Ben SoaresJAL-3746 Updated help docs for 3D-Beacons. Added and... commit | commitdiff | tree | snapshot
2021-11-03 Jim ProcterJAL-3915 JAL-3746 documentation for removed rnaview... commit | commitdiff | tree | snapshot
2021-11-03 Jim ProcterJAL-3916 TODO for improved selection of covering structures commit | commitdiff | tree | snapshot
2021-11-03 Jim ProcterJAL-3916 TODO for improved selection of covering structures commit | commitdiff | tree | snapshot
2021-11-03 Jim ProcterJAL-3915 remove RNAview opts from preferences. Still... commit | commitdiff | tree | snapshot
2021-11-02 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2021-11-02 Jim ProcterMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2021-11-02 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2021-11-02 Jim ProcterJAL-3875 test case and patch to verify the query 3d... commit | commitdiff | tree | snapshot
2021-11-01 Ben SoaresJAL-3907 changed two commented out lines to reflect... commit | commitdiff | tree | snapshot
2021-11-01 Ben SoaresJAL-3907 added creation of symbolic links to workaround... commit | commitdiff | tree | snapshot
2021-10-28 Ben SoaresJAL-3830 forgot to uncheck this commit | commitdiff | tree | snapshot
2021-10-28 Ben SoaresJAL-3830 polished setup app for macos commit | commitdiff | tree | snapshot
2021-10-27 Ben SoaresJAL-3830 quick fix to installer text commit | commitdiff | tree | snapshot
2021-10-27 Ben SoaresJAL-3830 install4j9 tries to parse and can't cope with... commit | commitdiff | tree | snapshot
2021-10-26 Ben SoaresJAL-3830 Added steps for install4j9 to create macOS... commit | commitdiff | tree | snapshot
2021-10-26 Ben SoaresJAL-3907 adjusted download_jdks.sh and download_jres... commit | commitdiff | tree | snapshot
2021-10-18 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2021-10-18 Jim ProcterMerge branch 'bug/r2_11_2/JAL-3904_structureviewermenu... commit | commitdiff | tree | snapshot
2021-10-18 Jim ProcterJAL-3905 Fix: wait for response when sending mouseovers... bug/r2_11_2/JAL-3904_structureviewermenu commit | commitdiff | tree | snapshot
2021-10-18 Jim ProcterJAL-3904 override buildActionMenu to add in additional... commit | commitdiff | tree | snapshot
2021-10-18 Jim ProcterJAL-3904 failing test commit | commitdiff | tree | snapshot
2021-10-01 gmungocJAL-3725 restrict mapped virtual feature location to... commit | commitdiff | tree | snapshot
2021-10-01 gmungocJAL-3725 helper methods for computing mapped feature... commit | commitdiff | tree | snapshot
2021-10-01 gmungocJAL-3725 exclude stop codon from CDS-to-protein mapping commit | commitdiff | tree | snapshot
2021-10-01 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2021-10-01 Jim ProcterJAL-3616 show name of structure viewer in ‘new view... commit | commitdiff | tree | snapshot
2021-10-01 Jim ProcterJAL-3616 explicit configure external viewer config commit | commitdiff | tree | snapshot
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