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2015-06-05 Jim ProcterJAL-653 allow dummy sequences to be created if a sequen... commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-653 convenience method to resolve strand attribute... commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-1115 JAL-653 partial introduction of List interface... commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-653 JAL-966 TODO and avoid NPE when desktop instanc... commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-653 codon frames go on the dataset commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-653 refactored exonerate full output to separate... commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-653 JAL-845 test to check exonerate cDNA-Protein... commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-1482 JAL-653 refactor feature file import code... commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-1482 refactor setTableData to more sensible name... commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2015-06-04 gmungocClear status bar message when initialisation complete commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1750 small tidy of AlignSeq.printMapping (+Junit) commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1544 spelling in javadoc only commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1622 code tidy (+Junit) of collateForPdb() commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1747 close all windows on Quit (+small bug fix) commit | commitdiff | tree | snapshot
2015-06-04 gmungoctoString method added to aid viewing in the debugger commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1270 testToString added commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1750 View Mapping scoped to that viewer's mappings... commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1743 new Chimera menu option to 'fit to window' commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1743 View Chain sub-menu now being populated commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1753 statusPanel added (for ProgressBar); 'Fit... commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1753 ChimeraViewFrame hosts its own ProgressBar commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1742 don't offer to align another chain to the... commit | commitdiff | tree | snapshot
2015-06-04 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1757 match only first altloc CA in PDB structure... commit | commitdiff | tree | snapshot
2015-06-04 tcofoegbuJAL-1641 added some JSON libraries to appletlib commit | commitdiff | tree | snapshot
2015-06-04 tcofoegbuclean up commit | commitdiff | tree | snapshot
2015-06-04 tcofoegbuJAL-1756 fix failed test as a result of runing the... commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1421 generic collections in MCView package (+unit... commit | commitdiff | tree | snapshot
2015-06-04 tcofoegbuMerge branch 'features/JAL-1641_JSON-extension' into... commit | commitdiff | tree | snapshot
2015-06-04 tcofoegbuJAL-1756 bug-fix commit | commitdiff | tree | snapshot
2015-06-04 tcofoegbuJAL-1641 updated json schema to make it more generic... commit | commitdiff | tree | snapshot
2015-06-02 tcofoegbufixed bug in build.xml commit | commitdiff | tree | snapshot
2015-06-02 tcofoegbuMerge branch 'features/JAL-1641_JSON-extension' into... commit | commitdiff | tree | snapshot
2015-06-02 tcofoegbuJAL-1641 updated build.xml commit | commitdiff | tree | snapshot
2015-06-02 tcofoegbuJAL-1641 updated examples/applets.html commit | commitdiff | tree | snapshot
2015-06-02 tcofoegbuMerge branch 'features/JAL-1641_JSON-extension' into... commit | commitdiff | tree | snapshot
2015-06-02 tcofoegbuJAL-1641 applet build fix commit | commitdiff | tree | snapshot
2015-06-01 Jim ProcterJAL-1370 group and alignment reference sequences are... commit | commitdiff | tree | snapshot
2015-06-01 tcofoegbuMerge branch 'features/JAL-1641_JSON-extension' into... commit | commitdiff | tree | snapshot
2015-06-01 tcofoegbuJAL-1641 remove all refs/imports from gui package commit | commitdiff | tree | snapshot
2015-06-01 tcofoegbuMerge branch 'bug/JAL-1703_hint_select_by_annot' into... commit | commitdiff | tree | snapshot
2015-06-01 tcofoegbuJAL-1703 added tooltip hints to components of the Selec... commit | commitdiff | tree | snapshot
2015-06-01 tcofoegbuMerge branch 'bug/JAL-1734_misleading-progress-bar... commit | commitdiff | tree | snapshot
2015-06-01 tcofoegbuJAL-1734 updated progress bar messages commit | commitdiff | tree | snapshot
2015-05-29 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-05-29 tcofoegbuJAL-1748 house keeping commit | commitdiff | tree | snapshot
2015-05-29 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-05-29 gmungocJAL-1753 declare field with interface type; check for... commit | commitdiff | tree | snapshot
2015-05-29 Jim ProcterMerge branch 'JAL-1755_npe_groupconsensus' into develop commit | commitdiff | tree | snapshot
2015-05-29 Jim ProcterJAL-1755 fix for NPE when setting up temporary variables commit | commitdiff | tree | snapshot
2015-05-29 gmungocJAL-1753 Junit for new class commit | commitdiff | tree | snapshot
2015-05-29 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-05-29 gmungocJAL-1753 duplicated code refactored to new class Progre... commit | commitdiff | tree | snapshot
2015-05-29 tcofoegbuMerge branch 'bug/JAL-1748_extend-pdb-query-opt' into... commit | commitdiff | tree | snapshot
2015-05-29 tcofoegbuJAL-1748 and employ preprocessing routine when return... commit | commitdiff | tree | snapshot
2015-05-29 tcofoegbuvalidate PDB selections on mouse release event commit | commitdiff | tree | snapshot
2015-05-28 tcofoegbuJAL-1700 made PDB service error mechanism more user... commit | commitdiff | tree | snapshot
2015-05-28 tcofoegbuMerge branch 'bug/JAL-1751_make-table-uneditable' into... commit | commitdiff | tree | snapshot
2015-05-28 tcofoegbuJAL-1751 provided method to overide isCellEditable... commit | commitdiff | tree | snapshot
2015-05-28 tcofoegbuMerge branch 'bug/JAL-1749_reinstate-rna-viewing' into... commit | commitdiff | tree | snapshot
2015-05-28 tcofoegbuJAL-1749 reinstated the ability to view RNA structures commit | commitdiff | tree | snapshot
2015-05-28 tcofoegbuJAL-1740 minor house keeping commit | commitdiff | tree | snapshot
2015-05-27 tcofoegbuRemoved redundant classes and dependencies pulled in... commit | commitdiff | tree | snapshot
2015-05-27 tcofoegbuMerge branch 'features/JAL-1740_Decoup-BioJS' into... commit | commitdiff | tree | snapshot
2015-05-27 tcofoegbuJAL-1740 updated synch codes to use a git repo rather... features/JAL-1740_Decoup-BioJS commit | commitdiff | tree | snapshot
2015-05-26 tcofoegbuJAL-1627 bug fix to remove wierd space in Sequence... commit | commitdiff | tree | snapshot
2015-05-25 tcofoegbubuild fix commit | commitdiff | tree | snapshot
2015-05-22 tcofoegbuMerge branch 'features/JAL-1745_PDB-redownload' into... commit | commitdiff | tree | snapshot
2015-05-22 tcofoegbuJAL-1745, JAL-1717 improvement to ensure cached PDB... commit | commitdiff | tree | snapshot
2015-05-22 tcofoegbuMerge branch 'features/JAL-1745_PDB-redownload' into... commit | commitdiff | tree | snapshot
2015-05-22 tcofoegbuJAL-1745 improvement to retreive already downloaded... commit | commitdiff | tree | snapshot
2015-05-21 tcofoegbuJAL-1740 implemented auto-update of BioJsMSA, introduce... features/JAL-1740_BioJsAutoUpdater commit | commitdiff | tree | snapshot
2015-05-20 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-05-20 gmungocJAL-1741 nucleotide-aware colour schemes applied to... commit | commitdiff | tree | snapshot
2015-05-20 tcofoegbuMerge branch 'features/JAL-1739_JSON-versioning' into... commit | commitdiff | tree | snapshot
2015-05-20 tcofoegbuJAL-1739 added svid - serial version id to hold version... commit | commitdiff | tree | snapshot
2015-05-20 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-05-20 gmungocJAL-796 JAL-1652 better implementation (key binding... commit | commitdiff | tree | snapshot
2015-05-20 tcofoegbuMerge branch 'features/JAL-1541_BioJsMSA' into develop commit | commitdiff | tree | snapshot
2015-05-20 tcofoegbuJAL-1541 minor code clean up, and added test for BioJsH... commit | commitdiff | tree | snapshot
2015-05-19 tcofoegbuMerge branch 'features/JAL-1541_BioJsMSA' into develop commit | commitdiff | tree | snapshot
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option... commit | commitdiff | tree | snapshot
2015-05-19 tcofoegbuJAL-1541 Modified BioJs exporter to take advantage... commit | commitdiff | tree | snapshot
2015-05-18 gmungocJAL-1663 detect tab out of RGB value; correct field... commit | commitdiff | tree | snapshot
2015-05-18 gmungocJAL-1663 apply new colour correctly; source formatting commit | commitdiff | tree | snapshot
2015-05-18 gmungocJAL-1652 Escape key now closes Find dialog commit | commitdiff | tree | snapshot
2015-05-18 gmungocJAL-1737 updated JUnit so it creates positional annotations commit | commitdiff | tree | snapshot
2015-05-15 gmungocJAL-1270 main method converted to JUnit test commit | commitdiff | tree | snapshot
2015-05-15 gmungocJAL-1270 main method converted to JUnit test 'as seen' commit | commitdiff | tree | snapshot
2015-05-15 gmungocJAL-1270 main method converted 'as seen' to JUnit commit | commitdiff | tree | snapshot
2015-05-15 gmungocJAL-1737 ignore non-positional annotations for display commit | commitdiff | tree | snapshot
2015-05-15 gmungocJAL-1270 added test for regex actually used; include... commit | commitdiff | tree | snapshot
2015-05-15 gmungocJAL-1270 main methods converted to JUnit commit | commitdiff | tree | snapshot
2015-05-14 gmungocJAL-1727 JAL-1270 obsolete DAS registry URL updated... commit | commitdiff | tree | snapshot
2015-05-14 gmungocJAL-1270 set Cache properties in setUp to ensure test... commit | commitdiff | tree | snapshot
2015-05-13 gmungocJAL-1575 no-cache headers added to (empty) rest response commit | commitdiff | tree | snapshot
2015-05-13 gmungocJAL-1712 fixes/tests for Castor binding of EMBL XML... commit | commitdiff | tree | snapshot
2015-05-13 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
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