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jalview.git
2019-04-26 gmungocJAL-2738 JAL-2743 properties to map VCF header to speci... commit | commitdiff | tree | snapshot
2019-04-26 Ben SoaresAlso removing eclipse .project and .settings from the... commit | commitdiff | tree | snapshot
2019-04-26 Ben SoaresRemoving .classpath from this branch commit | commitdiff | tree | snapshot
2019-04-26 Jim ProcterJAL-3150 examples/exampleFile.jvp for updated manual... commit | commitdiff | tree | snapshot
2019-04-26 Ben SoaresJAL-3233 Added isAMac check for -Xdock:icon addition... commit | commitdiff | tree | snapshot
2019-04-26 gmungocJAL-3010 borderless 'x' for "delete this filter condition" commit | commitdiff | tree | snapshot
2019-04-26 gmungocJAL-2808 better tooltip 'delete this condition' commit | commitdiff | tree | snapshot
2019-04-26 gmungocJAL-3226 removal of superseded changes commit | commitdiff | tree | snapshot
2019-04-26 gmungocJAL-3010 borderless 'x' for "delete this filter condition" commit | commitdiff | tree | snapshot
2019-04-25 Jalview Build BoxJAL-3234 tidy up stdout on build commit | commitdiff | tree | snapshot
2019-04-25 Jalview Build BoxJAL-3234 allow gradle builds to run without having... commit | commitdiff | tree | snapshot
2019-04-25 Jalview Build BoxMerge branch 'task/JAL-3234_211_codesigning' into develop commit | commitdiff | tree | snapshot
2019-04-25 Jalview Build BoxMerge branch 'bug/JAL-3224_getdown_changed_to_unpack_tg... commit | commitdiff | tree | snapshot
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Fixed help image mangling, moved... commit | commitdiff | tree | snapshot
2019-04-25 Jalview Build BoxMerge branch 'bug/JAL-3224_getdown_changed_to_unpack_tg... commit | commitdiff | tree | snapshot
2019-04-25 Jalview Build BoxJAL-3234 enable codesigning and executable-post-process... commit | commitdiff | tree | snapshot
2019-04-25 Jalview Build BoxJAL-3234 Gradle properties for signing: OSX_KEYSTORE... commit | commitdiff | tree | snapshot
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Some fixes in install4j template... commit | commitdiff | tree | snapshot
2019-04-25 Ben SoaresJAL-3224 JAL-3225 To be compatible with install4j bundl... commit | commitdiff | tree | snapshot
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Added lines to check for updates... commit | commitdiff | tree | snapshot
2019-04-25 Ben SoaresJAL-3224 Tidied up Network installers in install4j... commit | commitdiff | tree | snapshot
2019-04-24 Ben SoaresJAL-3224 minor fix for build.gradle and gradle eclipse commit | commitdiff | tree | snapshot
2019-04-24 Jim ProcterMerge branch 'task/JAL-3225_Integration_Gradle_building... commit | commitdiff | tree | snapshot
2019-04-24 Jim ProcterJAL-1929 JAL-3224 java 8 and java 11 specific getdown... commit | commitdiff | tree | snapshot
2019-04-24 Jim ProcterJAL-1929 JAL-3224 JRE getdown URLs must be relative... commit | commitdiff | tree | snapshot
2019-04-23 Jim ProcterJAL-3130 add JAVA_VERSION to shadowJar classifier so... commit | commitdiff | tree | snapshot
2019-04-23 Jim ProcterJAL-3130 make sure only libDistDir/*.jar are added... commit | commitdiff | tree | snapshot
2019-04-23 Jim ProcterMerge branch 'develop' into bug/JAL-3224_getdown_change... commit | commitdiff | tree | snapshot
2019-04-23 Jim ProcterJAL-1929 JAL-3224 getdown artefacts staged as getdown... commit | commitdiff | tree | snapshot
2019-04-23 Jim ProcterJAL-1929 JAL-3224 getdown channel structure is {build... commit | commitdiff | tree | snapshot
2019-04-23 hansonr[JAL-3226] problem that JavaScript (or Java) may consol... commit | commitdiff | tree | snapshot
2019-04-22 hansonrupdate of SwingJS -- no changes known. commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterJAL-3224 JAL-3196 still trying to specify projectFile... commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterJAL-3224 JAL-3196 still trying to specify projectFile... commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterJAL-3224 JAL-3196 specify file object in projectFile... commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterJAL-3130 JAL-3224 patch URL paths to point to jalview... commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterJAL-3130 provide absolute module path as J11 compile... commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterMerge branch 'jims/JAL-3130_Java11_Gradle_publishing... commit | commitdiff | tree | snapshot
2019-04-20 gmungocJAL-2791 tailored message if find fails on selection... commit | commitdiff | tree | snapshot
2019-04-18 hansonrminor code clean up commit | commitdiff | tree | snapshot
2019-04-18 hansonrminor code clean up commit | commitdiff | tree | snapshot
2019-04-18 hansonr// BH 2018.04.18 comment: addNotify() is not appropriat... commit | commitdiff | tree | snapshot
2019-04-18 hansonrAdds check for gap padding to disallow fast paint upon... commit | commitdiff | tree | snapshot
2019-04-18 hansonrremoves unnecessary clearFastPaint commit | commitdiff | tree | snapshot
2019-04-18 hansonrCorrects incorrect calls to ViewportRanges.setEndSeq() commit | commitdiff | tree | snapshot
2019-04-18 hansonrpushing again, just comments commit | commitdiff | tree | snapshot
2019-04-18 hansonrhack for fastpaint Java bug upshifting one line after... commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-1793 basic help text for VCF option commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-3111 additional release notes commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-3111 small simplification of table tags, valign top commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-3111 release notes first pass complete commit | commitdiff | tree | snapshot
2019-04-18 Ben SoaresJAL-3130 moved jar needed for getdown to libs (not... commit | commitdiff | tree | snapshot
2019-04-18 hansonrreverting seqPanel.seqCanvas.clearFastPaint(); commit | commitdiff | tree | snapshot
2019-04-18 Ben SoaresJAL-3224 Removed JREs (these now need to be in ~/buildt... commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-2620 updated help page to mention alternative genet... commit | commitdiff | tree | snapshot
2019-04-18 gmungocMerge branch 'develop' into Jalview-JS/develop commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-3193 dbSource always "ENSEMBL" commit | commitdiff | tree | snapshot
2019-04-18 gmungocMerge branch 'develop' into Jalview-JS/develop commit | commitdiff | tree | snapshot
2019-04-18 hansonrexplicit Hashtable objects commit | commitdiff | tree | snapshot
2019-04-18 hansonradds an explicit clearing of the SeqCanvas fastPaint... commit | commitdiff | tree | snapshot
2019-04-17 gmungocJAL-3026 fix bug loading Jalview Project (in Java) commit | commitdiff | tree | snapshot
2019-04-17 Jim ProcterJAL-3111 fix 2.11 html anchor in docs commit | commitdiff | tree | snapshot
2019-04-17 Jim ProcterMerge branch 'documentation/JAL-3111_release_211' into... commit | commitdiff | tree | snapshot
2019-04-17 Jim ProcterJAL-3111 Jalview 2.11 what’s New and estimated release... commit | commitdiff | tree | snapshot
2019-04-17 Jim ProcterJAL-3111 tweak PCA documentation commit | commitdiff | tree | snapshot
2019-04-17 Jim ProcterMerge branch 'develop' into documentation/JAL-3111_rele... commit | commitdiff | tree | snapshot
2019-04-17 gmungocMerge branch 'develop' into Jalview-JS/develop commit | commitdiff | tree | snapshot
2019-04-17 Ben SoaresJAL-3224 Add commons-compress-1.18.jar commit | commitdiff | tree | snapshot
2019-04-17 Ben SoaresJAL-3224 Bundling appropriate Mac OS/Windows JRE as... commit | commitdiff | tree | snapshot
2019-04-17 Ben SoaresJAL-3224 New version of getdown which will cope with... commit | commitdiff | tree | snapshot
2019-04-16 Ben SoaresJAL-3130 moved resources/install4j to utils/install4j commit | commitdiff | tree | snapshot
2019-04-16 hansonrbetter resource loading/file caching commit | commitdiff | tree | snapshot
2019-04-16 hansonrcaching of DnD files dropped commit | commitdiff | tree | snapshot
2019-04-16 hansonrjmol-app updated for SwingJS ZipTools upgrade commit | commitdiff | tree | snapshot
2019-04-16 hansonrlocalizes Thread colourby so that it does not cause... commit | commitdiff | tree | snapshot
2019-04-16 hansonrcomments only commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 tidy up system.output jims/JAL-3130_Java11_Gradle_publishing commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 call Jalview via the Test JVM’s JAVA_HOME... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 refactored ‘clover’ to ‘use_clover’ since... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 JAL-1889 reportCurrentWorkingDirectory test... commit | commitdiff | tree | snapshot
2019-04-16 hansonrmissing check for JavaScript in client response for... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 JAL-1889 report absolute paths for CommandLine... commit | commitdiff | tree | snapshot
2019-04-16 hansonrunused old SwingJS dependencies commit | commitdiff | tree | snapshot
2019-04-16 hansonrunused old SwingJS dependencies commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 JAL-1889 report absolute paths for CommandLine... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 JAL-1889 report absolute paths for CommandLine... commit | commitdiff | tree | snapshot
2019-04-16 hansonrAdds _j2sclasslist.txt to SwingJS distribution; fixes... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3196 change default are resource properties to... commit | commitdiff | tree | snapshot
2019-04-16 gmungocMerge branch 'bug/JAL-3218scalePanelPopups' into develop commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterReinstate imports from "JAL-1889 JAL-3130 patch broken... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-1189 JAL-3130 patch broken tests commit | commitdiff | tree | snapshot
2019-04-15 Ben SoaresJAL-3130 Somewhere in the old libs the Jws2 client... commit | commitdiff | tree | snapshot
2019-04-15 Ben SoaresJAL-3130 Helper classes to take Class Exceptions when... commit | commitdiff | tree | snapshot
2019-04-15 Ben SoaresJAL-3130 some clover fixes for helplinks. Use 'gradle... commit | commitdiff | tree | snapshot
2019-04-15 gmungocJAL-3193 no separatge EnsemblGenomes source in Sequence... commit | commitdiff | tree | snapshot
2019-04-15 Ben SoaresJAL-3130 adapted getdown src. attempt 2. first attempt... commit | commitdiff | tree | snapshot
2019-04-15 gmungocMerge branch 'develop' into Jalview-JS/develop commit | commitdiff | tree | snapshot
2019-04-14 Jim ProcterJAL-3130 write clover.xml during cloverReport phase commit | commitdiff | tree | snapshot
2019-04-14 Jim ProcterJAL-3130 make sure testng-results.xml is generated commit | commitdiff | tree | snapshot
2019-04-12 Jim ProcterJAL-3130 specify module list when launching new Jalview... commit | commitdiff | tree | snapshot
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