1 Clazz.declarePackage ("jalview.datamodel");
2 Clazz.load (["jalview.datamodel.CigarSimple"], "jalview.datamodel.CigarCigar", null, function () {
3 c$ = Clazz.decorateAsClass (function () {
5 Clazz.instantialize (this, arguments);
6 }, jalview.datamodel, "CigarCigar", jalview.datamodel.CigarSimple);
7 Clazz.makeConstructor (c$,
9 Clazz.superConstructor (this, jalview.datamodel.CigarCigar);
10 this.refCigar = cigar;
11 }, "jalview.datamodel.SeqCigar");
12 Clazz.overrideMethod (c$, "getSequenceString",
14 if (this.length == 0) {
16 }var refString = this.refCigar.getSequenceString (GapChar);
17 if (refString != null) {
18 return (this.length == 0) ? "" : this.getSequenceAndDeletions (refString, GapChar)[0];