WEB-INF/web.xml

   1 <web-app xmlns="http://java.sun.com/xml/ns/j2ee"\r
   2     xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"\r
   3     xsi:schemaLocation="http://java.sun.com/xml/ns/j2ee http://java.sun.com/xml/ns/j2ee/web-app_2_4.xsd"\r
   4     version="2.4">\r
   5 \r
   6     <display-name>JABAWS</display-name>\r
   7     <description>JAva Bioinformatics Analysis Web Services (JABAWS) v.2</description>\r
   8 \r
   9         <listener>\r
  10                 <listener-class>compbio.ws.server.ShutdownEngines</listener-class>\r
  11         </listener>\r
  12     <listener>\r
  13         <listener-class>compbio.stat.servlet.StatisticCollector</listener-class>\r
  14      </listener>\r
  15     <listener>\r
  16         <listener-class>com.sun.xml.ws.transport.http.servlet.WSServletContextListener</listener-class>\r
  17     </listener>\r
  18     \r
  19         <!-- Session timeout in minutes -->\r
  20         <session-config>\r
  21                 <session-timeout>20</session-timeout>\r
  22     </session-config>\r
  23  \r
  24     <servlet>\r
  25         <description>Display pre-calculated accounting info</description>\r
  26         <servlet-name>DisplayStat</servlet-name>\r
  27         <servlet-class>compbio.stat.servlet.DisplayStat</servlet-class>\r
  28     </servlet>\r
  29   \r
  30     <servlet>\r
  31         <description>Display job list</description>\r
  32         <servlet-name>Joblist</servlet-name>\r
  33         <servlet-class>compbio.stat.servlet.Joblist</servlet-class>\r
  34     </servlet>\r
  35     \r
  36     <servlet>\r
  37         <description>Display monthly summary statistics</description>\r
  38         <servlet-name>AnnualStat</servlet-name>\r
  39         <servlet-class>compbio.stat.servlet.AnnualStat</servlet-class>\r
  40     </servlet>\r
  41     \r
  42     <servlet>\r
  43         <servlet-name>ClustalWS</servlet-name>\r
  44         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
  45         <load-on-startup>1</load-on-startup>\r
  46     </servlet>\r
  47     \r
  48     <servlet>\r
  49         <servlet-name>MuscleWS</servlet-name>\r
  50         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
  51         <load-on-startup>1</load-on-startup>\r
  52     </servlet>\r
  53     \r
  54     <servlet>\r
  55         <servlet-name>MafftWS</servlet-name>\r
  56         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
  57         <load-on-startup>1</load-on-startup>\r
  58     </servlet>\r
  59     \r
  60     <servlet>\r
  61         <servlet-name>TcoffeeWS</servlet-name>\r
  62         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
  63         <load-on-startup>1</load-on-startup>\r
  64     </servlet>\r
  65      \r
  66     <servlet>\r
  67         <servlet-name>ProbconsWS</servlet-name>\r
  68         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
  69         <load-on-startup>1</load-on-startup>\r
  70     </servlet>\r
  71     \r
  72      <servlet>\r
  73         <servlet-name>AAConWS</servlet-name>\r
  74         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
  75         <load-on-startup>1</load-on-startup>\r
  76     </servlet>\r
  77    \r
  78      <servlet>\r
  79         <servlet-name>JronnWS</servlet-name>\r
  80         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
  81         <load-on-startup>1</load-on-startup>\r
  82     </servlet>\r
  83 \r
  84      <servlet>\r
  85         <servlet-name>DisemblWS</servlet-name>\r
  86         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
  87                 <load-on-startup>1</load-on-startup>\r
  88     </servlet>\r
  89     \r
  90     <servlet>\r
  91         <servlet-name>GlobPlotWS</servlet-name>\r
  92         <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
  93         <load-on-startup>1</load-on-startup>\r
  94     </servlet>\r
  95         \r
  96     <servlet-mapping>\r
  97         <servlet-name>DisplayStat</servlet-name>\r
  98         <url-pattern>/DisplayStat</url-pattern>\r
  99         </servlet-mapping>\r
 100         \r
 101          <servlet-mapping>\r
 102         <servlet-name>AnnualStat</servlet-name>\r
 103         <url-pattern>/AnnualStat</url-pattern>\r
 104         </servlet-mapping>  \r
 105     \r
 106     <servlet-mapping>\r
 107         <servlet-name>Joblist</servlet-name>\r
 108         <url-pattern>/Joblist</url-pattern>\r
 109         </servlet-mapping> \r
 110         \r
 111     <servlet-mapping>\r
 112         <servlet-name>ClustalWS</servlet-name>\r
 113         <url-pattern>/ClustalWS</url-pattern>\r
 114     </servlet-mapping>\r
 115     \r
 116     <servlet-mapping>\r
 117         <servlet-name>MuscleWS</servlet-name>\r
 118         <url-pattern>/MuscleWS</url-pattern>\r
 119     </servlet-mapping>\r
 120 \r
 121    <servlet-mapping>\r
 122         <servlet-name>MafftWS</servlet-name>\r
 123         <url-pattern>/MafftWS</url-pattern>\r
 124     </servlet-mapping>\r
 125     \r
 126    <servlet-mapping>\r
 127         <servlet-name>TcoffeeWS</servlet-name>\r
 128         <url-pattern>/TcoffeeWS</url-pattern>\r
 129    </servlet-mapping>\r
 130 \r
 131    <servlet-mapping>\r
 132         <servlet-name>ProbconsWS</servlet-name>\r
 133         <url-pattern>/ProbconsWS</url-pattern>\r
 134    </servlet-mapping>\r
 135  \r
 136    <servlet-mapping>\r
 137         <servlet-name>AAConWS</servlet-name>\r
 138         <url-pattern>/AAConWS</url-pattern>\r
 139    </servlet-mapping>\r
 140    \r
 141     <servlet-mapping>\r
 142         <servlet-name>JronnWS</servlet-name>\r
 143         <url-pattern>/JronnWS</url-pattern>\r
 144    </servlet-mapping>\r
 145    \r
 146    <servlet-mapping>\r
 147         <servlet-name>DisemblWS</servlet-name>\r
 148         <url-pattern>/DisemblWS</url-pattern>\r
 149    </servlet-mapping>\r
 150    \r
 151    <servlet-mapping>\r
 152         <servlet-name>GlobPlotWS</servlet-name>\r
 153         <url-pattern>/GlobPlotWS</url-pattern>\r
 154    </servlet-mapping>\r
 155    \r
 156    <security-constraint>\r
 157     <web-resource-collection>\r
 158         <web-resource-name>Administrator pages</web-resource-name>\r
 159                 <!-- Prohibit access to any resources -->\r
 160         <url-pattern>/DisplayStat</url-pattern>\r
 161         <url-pattern>/Joblist</url-pattern>\r
 162         <url-pattern>/AnnualStat</url-pattern>\r
 163         <url-pattern>/conf/*</url-pattern>\r
 164                 <url-pattern>/binaries/*</url-pattern>\r
 165                 <url-pattern>/jobsout/*</url-pattern>\r
 166                 <url-pattern>/testsrc/*</url-pattern>\r
 167                 <url-pattern>/lib/*</url-pattern>\r
 168                 <url-pattern>/test-output/*</url-pattern>\r
 169         <!-- No http-method means all methods are constrained -->\r
 170     </web-resource-collection>\r
 171     <auth-constraint>\r
 172       <role-name>admin</role-name>\r
 173     </auth-constraint>\r
 174    </security-constraint>\r
 175 \r
 176   <!-- unsupported HTTP methods -->\r
 177   <security-constraint>\r
 178         <web-resource-collection>\r
 179         <web-resource-name>unsupported HTTP methods</web-resource-name>\r
 180         <url-pattern>/*</url-pattern>\r
 181             <http-method>PUT</http-method>\r
 182             <http-method>DELETE</http-method>\r
 183             <http-method>TRACE</http-method>\r
 184             <http-method>HEAD</http-method>\r
 185             <http-method>OPTIONS</http-method>\r
 186         </web-resource-collection>\r
 187         <auth-constraint/>\r
 188   </security-constraint>\r
 189       <!-- Define the Login Configuration for this Application -->\r
 190   <login-config>\r
 191          <auth-method>BASIC</auth-method>\r
 192          <realm-name>JABAWS administrators</realm-name>\r
 193   </login-config>\r
 194   \r
 195     <!-- Security roles referenced by this web application -->\r
 196   <security-role>\r
 197     <description>\r
 198       The role that is required to log in and view JABAWS internals\r
 199     </description>\r
 200     <role-name>admin</role-name>\r
 201   </security-role>\r
 202   \r
 203 </web-app>