binaries/src/ViennaRNA/doc/html/structinteract.html

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  71 <h1>interact Struct Reference</h1><!-- doxytag: class="interact" --><table border="0" cellpadding="0" cellspacing="0">
  72 <tr><td colspan="2"><h2>Data Fields</h2></td></tr>
  73 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a1fc8b3860c083f164daa9712690a3a56"></a><!-- doxytag: member="interact::Pi" ref="a1fc8b3860c083f164daa9712690a3a56" args="" -->
  74 double *&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structinteract.html#a1fc8b3860c083f164daa9712690a3a56">Pi</a></td></tr>
  75 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">probabilities of interaction <br/></td></tr>
  76 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a54f8183542fff4c32ab7ace49a16c02c"></a><!-- doxytag: member="interact::Gi" ref="a54f8183542fff4c32ab7ace49a16c02c" args="" -->
  77 double *&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structinteract.html#a54f8183542fff4c32ab7ace49a16c02c">Gi</a></td></tr>
  78 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">free energies of interaction <br/></td></tr>
  79 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="ad58303190f9e085c3ab59890cbf61223"></a><!-- doxytag: member="interact::Gikjl" ref="ad58303190f9e085c3ab59890cbf61223" args="" -->
  80 double&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structinteract.html#ad58303190f9e085c3ab59890cbf61223">Gikjl</a></td></tr>
  81 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">full free energy for interaction between [k,i] k&lt;i in longer seq and [j,l] j&lt;l in shorter seq <br/></td></tr>
  82 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a41793812abae560805414761fec398fe"></a><!-- doxytag: member="interact::Gikjl_wo" ref="a41793812abae560805414761fec398fe" args="" -->
  83 double&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structinteract.html#a41793812abae560805414761fec398fe">Gikjl_wo</a></td></tr>
  84 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Gikjl without contributions for prob_unpaired. <br/></td></tr>
  85 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="ab6d031a21388be8763b75ea74c937f17"></a><!-- doxytag: member="interact::i" ref="ab6d031a21388be8763b75ea74c937f17" args="" -->
  86 int&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structinteract.html#ab6d031a21388be8763b75ea74c937f17">i</a></td></tr>
  87 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">k&lt;i in longer seq <br/></td></tr>
  88 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a61e457fbf943d57364be6ddf1b4e7b8a"></a><!-- doxytag: member="interact::k" ref="a61e457fbf943d57364be6ddf1b4e7b8a" args="" -->
  89 int&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structinteract.html#a61e457fbf943d57364be6ddf1b4e7b8a">k</a></td></tr>
  90 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">k&lt;i in longer seq <br/></td></tr>
  91 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a7555cb6363d1479341eb72b9c087aa34"></a><!-- doxytag: member="interact::j" ref="a7555cb6363d1479341eb72b9c087aa34" args="" -->
  92 int&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structinteract.html#a7555cb6363d1479341eb72b9c087aa34">j</a></td></tr>
  93 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">j&lt;l in shorter seq <br/></td></tr>
  94 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a030ab45056342e12cb3955e4defd3904"></a><!-- doxytag: member="interact::l" ref="a030ab45056342e12cb3955e4defd3904" args="" -->
  95 int&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structinteract.html#a030ab45056342e12cb3955e4defd3904">l</a></td></tr>
  96 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">j&lt;l in shorter seq <br/></td></tr>
  97 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="ac9fcb5dca54ec5faa76e02b6488b9524"></a><!-- doxytag: member="interact::length" ref="ac9fcb5dca54ec5faa76e02b6488b9524" args="" -->
  98 int&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="structinteract.html#ac9fcb5dca54ec5faa76e02b6488b9524">length</a></td></tr>
  99 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">length of longer sequence <br/></td></tr>
 100 </table>
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