binaries/src/ViennaRNA/doc/latex/2Dfold_8h.tex

   1 \hypertarget{2Dfold_8h}{
   2 \section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/2Dfold.h File Reference}
   3 \label{2Dfold_8h}\index{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/2Dfold.h@{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/2Dfold.h}}
   4 }
   5 Include dependency graph for 2Dfold.h:\nopagebreak
   6 \begin{figure}[H]
   7 \begin{center}
   8 \leavevmode
   9 \includegraphics[width=210pt]{2Dfold_8h__incl}
  10 \end{center}
  11 \end{figure}
  12 \subsection*{Functions}
  13 \begin{DoxyCompactItemize}
  14 \item
  15 \hyperlink{structTwoDfold__vars}{TwoDfold\_\-vars} $\ast$ \hyperlink{group__kl__neighborhood__mfe_gac9284f132cf0eaa0a2f43590eda05488}{get\_\-TwoDfold\_\-variables} (const char $\ast$seq, const char $\ast$structure1, const char $\ast$structure2, int \hyperlink{fold__vars_8h_af9202a1a09f5828dc731e2d9a10fa111}{circ})
  16 \begin{DoxyCompactList}\small\item\em Get a structure of type \hyperlink{structTwoDfold__vars}{TwoDfold\_\-vars} prefilled with current global settings. \item\end{DoxyCompactList}\item
  17 void \hyperlink{group__kl__neighborhood__mfe_ga05bf4f31d216b1b160fd2d3d68e9b487}{destroy\_\-TwoDfold\_\-variables} (\hyperlink{structTwoDfold__vars}{TwoDfold\_\-vars} $\ast$our\_\-variables)
  18 \begin{DoxyCompactList}\small\item\em Destroy a \hyperlink{structTwoDfold__vars}{TwoDfold\_\-vars} datastructure without memory loss. \item\end{DoxyCompactList}\item
  19 \hyperlink{structTwoDfold__solution}{TwoDfold\_\-solution} $\ast$ \hyperlink{group__kl__neighborhood__mfe_ga47da790166020558d27323aef489703e}{TwoDfoldList} (\hyperlink{structTwoDfold__vars}{TwoDfold\_\-vars} $\ast$vars, int distance1, int distance2)
  20 \begin{DoxyCompactList}\small\item\em Compute MFE's and representative for distance partitioning. \item\end{DoxyCompactList}\item
  21 char $\ast$ \hyperlink{group__kl__neighborhood__mfe_gaf4dc05bf8fc1ea53acd7aeb798ba80c2}{TwoDfold\_\-backtrack\_\-f5} (unsigned int j, int k, int l, \hyperlink{structTwoDfold__vars}{TwoDfold\_\-vars} $\ast$vars)
  22 \begin{DoxyCompactList}\small\item\em Backtrack a minimum free energy structure from a 5' section of specified length. \item\end{DoxyCompactList}\end{DoxyCompactItemize}
  23
  24
  25 \subsection{Detailed Description}