binaries/src/ViennaRNA/doc/latex/2Dfold_8h_source.tex

   1 \hypertarget{2Dfold_8h}{\section{2\-Dfold.h}
   2 \label{2Dfold_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/2\-Dfold.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/2\-Dfold.\-h}}
   3 }
   4
   5 \begin{DoxyCode}
   6 00001 \textcolor{comment}{/*}
   7 00002 \textcolor{comment}{      minimum free energy}
   8 00003 \textcolor{comment}{      RNA secondary structure with}
   9 00004 \textcolor{comment}{      basepair distance d to reference structure prediction}
  10 00005 \textcolor{comment}{}
  11 00006 \textcolor{comment}{*/}
  12 00007 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_TWO\_D\_FOLD\_H\_\_}
  13 00008 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_TWO\_D\_FOLD\_H\_\_}
  14 00009 \textcolor{preprocessor}{}
  15 00032 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data\_structures.h}"}
  16 00033
  17 00034 \textcolor{preprocessor}{#ifdef \_\_GNUC\_\_}
  18 00035 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func \_\_attribute\_\_ ((deprecated))}
  19 00036 \textcolor{preprocessor}{}\textcolor{preprocessor}{#else}
  20 00037 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func}
  21 00038 \textcolor{preprocessor}{}\textcolor{preprocessor}{#endif}
  22 00039 \textcolor{preprocessor}{}
  23 00057 \hyperlink{structTwoDfold__vars}{TwoDfold\_vars} *\hyperlink{group__kl__neighborhood__mfe_gac9284f132cf0eaa0a2f43590eda05488}{get\_TwoDfold\_variables}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *seq,
  24 00058                                       \textcolor{keyword}{const} \textcolor{keywordtype}{char} *structure1,
  25 00059                                       \textcolor{keyword}{const} \textcolor{keywordtype}{char} *structure2,
  26 00060                                       \textcolor{keywordtype}{int} circ);
  27 00061
  28 00071 \textcolor{keywordtype}{void}          \hyperlink{group__kl__neighborhood__mfe_ga05bf4f31d216b1b160fd2d3d68e9b487}{destroy\_TwoDfold\_variables}(\hyperlink{structTwoDfold__vars}{TwoDfold\_vars} *
  29       our\_variables);
  30 00072
  31 00076 DEPRECATED(\hyperlink{structTwoDfold__solution}{TwoDfold\_solution} **TwoDfold(\hyperlink{structTwoDfold__vars}{TwoDfold\_vars} *our\_variables,
  32 00077                                         \textcolor{keywordtype}{int} distance1,
  33 00078                                         \textcolor{keywordtype}{int} distance2));
  34 00079
  35 00104 \hyperlink{structTwoDfold__solution}{TwoDfold\_solution} *\hyperlink{group__kl__neighborhood__mfe_ga47da790166020558d27323aef489703e}{TwoDfoldList}(\hyperlink{structTwoDfold__vars}{TwoDfold\_vars} *vars,
  36 00105                                 \textcolor{keywordtype}{int} distance1,
  37 00106                                 \textcolor{keywordtype}{int} distance2);
  38 00107
  39 00126 \textcolor{keywordtype}{char} *\hyperlink{group__kl__neighborhood__mfe_gaf4dc05bf8fc1ea53acd7aeb798ba80c2}{TwoDfold\_backtrack\_f5}(\textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} j,
  40 00127                             \textcolor{keywordtype}{int} k,
  41 00128                             \textcolor{keywordtype}{int} l,
  42 00129                             \hyperlink{structTwoDfold__vars}{TwoDfold\_vars} *vars);
  43 00130
  44 00134 \textcolor{preprocessor}{#endif}
  45 \end{DoxyCode}