binaries/src/ViennaRNA/doc/latex/2Dpfold_8h.tex

   1 \hypertarget{2Dpfold_8h}{\section{/home/asherstnev/\-Projects/\-Java.projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/2\-Dpfold.h File Reference}
   2 \label{2Dpfold_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/2\-Dpfold.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/2\-Dpfold.\-h}}
   3 }
   4 Include dependency graph for 2\-Dpfold.h\-:
   5 \nopagebreak
   6 \begin{figure}[H]
   7 \begin{center}
   8 \leavevmode
   9 \includegraphics[width=250pt]{2Dpfold_8h__incl}
  10 \end{center}
  11 \end{figure}
  12 \subsection*{Functions}
  13 \begin{DoxyCompactItemize}
  14 \item
  15 \hyperlink{structTwoDpfold__vars}{Two\-Dpfold\-\_\-vars} $\ast$ \hyperlink{group__kl__neighborhood__pf_ga1aca740e2a75ab2b2951538266e53d64}{get\-\_\-\-Two\-Dpfold\-\_\-variables} (const char $\ast$seq, const char $\ast$structure1, char $\ast$structure2, int \hyperlink{fold__vars_8h_af9202a1a09f5828dc731e2d9a10fa111}{circ})
  16 \begin{DoxyCompactList}\small\item\em Get a datastructure containing all necessary attributes and global folding switches. \end{DoxyCompactList}\item
  17 \hyperlink{structTwoDpfold__vars}{Two\-Dpfold\-\_\-vars} $\ast$ \hyperlink{group__kl__neighborhood__pf_gacc2f66da7ee62096cab629fce7112216}{get\-\_\-\-Two\-Dpfold\-\_\-variables\-\_\-from\-\_\-\-M\-F\-E} (\hyperlink{structTwoDfold__vars}{Two\-Dfold\-\_\-vars} $\ast$mfe\-\_\-vars)
  18 \begin{DoxyCompactList}\small\item\em Get the datastructure containing all necessary attributes and global folding switches from a pre-\/filled mfe-\/datastructure. \end{DoxyCompactList}\item
  19 void \hyperlink{group__kl__neighborhood__pf_gafe994291458ee2ac34d3eb825ef62a15}{destroy\-\_\-\-Two\-Dpfold\-\_\-variables} (\hyperlink{structTwoDpfold__vars}{Two\-Dpfold\-\_\-vars} $\ast$vars)
  20 \begin{DoxyCompactList}\small\item\em Free all memory occupied by a \hyperlink{structTwoDpfold__vars}{Two\-Dpfold\-\_\-vars} datastructure. \end{DoxyCompactList}\item
  21 \hyperlink{structTwoDpfold__solution}{Two\-Dpfold\-\_\-solution} $\ast$ \hyperlink{group__kl__neighborhood__pf_ga3e1cd3b24eb635c65181182cbb4ae3eb}{Two\-Dpfold\-List} (\hyperlink{structTwoDpfold__vars}{Two\-Dpfold\-\_\-vars} $\ast$vars, int max\-Distance1, int max\-Distance2)
  22 \begin{DoxyCompactList}\small\item\em Compute the partition function for all distance classes. \end{DoxyCompactList}\item
  23 char $\ast$ \hyperlink{group__kl__neighborhood__stochbt_gae251288f50dd4ae7d315af0085775f71}{Two\-Dpfold\-\_\-pbacktrack} (\hyperlink{structTwoDpfold__vars}{Two\-Dpfold\-\_\-vars} $\ast$vars, int d1, int d2)
  24 \begin{DoxyCompactList}\small\item\em Sample secondary structure representatives from a set of distance classes according to their Boltzmann probability. \end{DoxyCompactList}\item
  25 char $\ast$ \hyperlink{group__kl__neighborhood__stochbt_ga13430ac6a7f90df426774f131647d2c7}{Two\-Dpfold\-\_\-pbacktrack5} (\hyperlink{structTwoDpfold__vars}{Two\-Dpfold\-\_\-vars} $\ast$vars, int d1, int d2, unsigned int length)
  26 \begin{DoxyCompactList}\small\item\em Sample secondary structure representatives with a specified length from a set of distance classes according to their Boltzmann probability. \end{DoxyCompactList}\end{DoxyCompactItemize}