binaries/src/ViennaRNA/doc/latex/ali__plex_8h_source.tex

   1 \hypertarget{ali__plex_8h}{\section{ali\-\_\-plex.\-h}
   2 \label{ali__plex_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/ali\-\_\-plex.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/ali\-\_\-plex.\-h}}
   3 }
   4
   5 \begin{DoxyCode}
   6 00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_ALI\_PLEX\_H\_\_}
   7 00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_ALI\_PLEX\_H\_\_}
   8 00003 \textcolor{preprocessor}{}
   9 00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data\_structures.h}"}
  10 00008 \hyperlink{structduplexT}{duplexT}** aliLduplexfold( \textcolor{keyword}{const} \textcolor{keywordtype}{char} *s1[],
  11 00009                           \textcolor{keyword}{const} \textcolor{keywordtype}{char} *s2[],
  12 00010                           \textcolor{keyword}{const} \textcolor{keywordtype}{int} threshold,
  13 00011                           \textcolor{keyword}{const} \textcolor{keywordtype}{int} extension\_cost,
  14 00012                           \textcolor{keyword}{const} \textcolor{keywordtype}{int} alignment\_length,
  15 00013                           \textcolor{keyword}{const} \textcolor{keywordtype}{int} delta,
  16 00014                           \textcolor{keyword}{const} \textcolor{keywordtype}{int} fast,
  17 00015                           \textcolor{keyword}{const} \textcolor{keywordtype}{int} il\_a,
  18 00016                           \textcolor{keyword}{const} \textcolor{keywordtype}{int} il\_b,
  19 00017                           \textcolor{keyword}{const} \textcolor{keywordtype}{int} b\_a,
  20 00018                           \textcolor{keyword}{const} \textcolor{keywordtype}{int} b\_b);
  21 00022 \hyperlink{structduplexT}{duplexT}** aliLduplexfold\_XS(\textcolor{keyword}{const} \textcolor{keywordtype}{char}* s1[],
  22 00023                             \textcolor{keyword}{const} \textcolor{keywordtype}{char}* s2[],
  23 00024                             \textcolor{keyword}{const} \textcolor{keywordtype}{int} **access\_s1,
  24 00025                             \textcolor{keyword}{const} \textcolor{keywordtype}{int} **access\_s2,
  25 00026                             \textcolor{keyword}{const} \textcolor{keywordtype}{int} threshold,
  26 00027                             \textcolor{keyword}{const} \textcolor{keywordtype}{int} alignment\_length,
  27 00028                             \textcolor{keyword}{const} \textcolor{keywordtype}{int} delta,
  28 00029                             \textcolor{keyword}{const} \textcolor{keywordtype}{int} fast,
  29 00030                             \textcolor{keyword}{const} \textcolor{keywordtype}{int} il\_a,
  30 00031                             \textcolor{keyword}{const} \textcolor{keywordtype}{int} il\_b,
  31 00032                             \textcolor{keyword}{const} \textcolor{keywordtype}{int} b\_a,
  32 00033                             \textcolor{keyword}{const} \textcolor{keywordtype}{int} b\_b);
  33 00034
  34 00035 \textcolor{comment}{/*}
  35 00036 \textcolor{comment}{extern duplexT aliduplexfold(const char *s1[], const char *s2[], const int extension\_cost);}
  36 00037 \textcolor{comment}{extern duplexT aliduplexfold\_XS(const char *s1[], const char *s2[],const int **access\_s1, }
  37 00038 \textcolor{comment}{const int **access\_s2, const int i\_pos, const int j\_pos, const int threshold);}
  38 00039 \textcolor{comment}{*/}
  39 00040 \textcolor{preprocessor}{#endif}
  40 \end{DoxyCode}