binaries/src/ViennaRNA/doc/latex/cofold_8h_source.tex

   1 \hypertarget{cofold_8h}{\section{cofold.\-h}
   2 \label{cofold_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/cofold.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/cofold.\-h}}
   3 }
   4
   5 \begin{DoxyCode}
   6 00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_COFOLD\_H\_\_}
   7 00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_COFOLD\_H\_\_}
   8 00003 \textcolor{preprocessor}{}
   9 00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data\_structures.h}"}
  10 00005
  11 00006 \textcolor{preprocessor}{#ifdef \_\_GNUC\_\_}
  12 00007 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func \_\_attribute\_\_ ((deprecated))}
  13 00008 \textcolor{preprocessor}{}\textcolor{preprocessor}{#else}
  14 00009 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func}
  15 00010 \textcolor{preprocessor}{}\textcolor{preprocessor}{#endif}
  16 00011 \textcolor{preprocessor}{}
  17 00065 \textcolor{keywordtype}{float} \hyperlink{group__mfe__cofold_gabc8517f22cfe70595ee81fc837910d52}{cofold}( \textcolor{keyword}{const} \textcolor{keywordtype}{char} *sequence,
  18 00066               \textcolor{keywordtype}{char} *structure);
  19 00067
  20 00072 \textcolor{keywordtype}{float} \hyperlink{group__mfe__cofold_gafe430060533f14b11fc611f60b3f1f6f}{cofold\_par}( \textcolor{keyword}{const} \textcolor{keywordtype}{char} *\textcolor{keywordtype}{string},
  21 00073                   \textcolor{keywordtype}{char} *structure,
  22 00074                   \hyperlink{structparamT}{paramT} *parameters,
  23 00075                   \textcolor{keywordtype}{int} is\_constrained);
  24 00076
  25 00080 \textcolor{keywordtype}{void}      \hyperlink{group__mfe__cofold_gaafb33d7473eb9af9d1b168ca8761c41a}{free\_co\_arrays}(\textcolor{keywordtype}{void});
  26 00081
  27 00085 \textcolor{keywordtype}{void}      \hyperlink{group__mfe__cofold_ga4fcbf34e77b99bfbb2333d2ab0c41a57}{update\_cofold\_params}(\textcolor{keywordtype}{void});
  28 00086
  29 00087 \textcolor{keywordtype}{void}      update\_cofold\_params\_par(\hyperlink{structparamT}{paramT} *parameters);
  30 00088
  31 00089
  32 00105 \textcolor{keywordtype}{void} \hyperlink{group__mfe__cofold_ga5f5bf4df35d0554f6ace9579f8744c48}{export\_cofold\_arrays\_gq}( \textcolor{keywordtype}{int} **f5\_p,
  33 00106                               \textcolor{keywordtype}{int} **c\_p,
  34 00107                               \textcolor{keywordtype}{int} **fML\_p,
  35 00108                               \textcolor{keywordtype}{int} **fM1\_p,
  36 00109                               \textcolor{keywordtype}{int} **fc\_p,
  37 00110                               \textcolor{keywordtype}{int} **ggg\_p,
  38 00111                               \textcolor{keywordtype}{int} **indx\_p,
  39 00112                               \textcolor{keywordtype}{char} **ptype\_p);
  40 00113
  41 00128 \textcolor{keywordtype}{void} \hyperlink{group__mfe__cofold_ga5cb6b59983f1f74ccc00b9b9c4e84482}{export\_cofold\_arrays}(\textcolor{keywordtype}{int} **f5\_p,
  42 00129                           \textcolor{keywordtype}{int} **c\_p,
  43 00130                           \textcolor{keywordtype}{int} **fML\_p,
  44 00131                           \textcolor{keywordtype}{int} **fM1\_p,
  45 00132                           \textcolor{keywordtype}{int} **fc\_p,
  46 00133                           \textcolor{keywordtype}{int} **indx\_p,
  47 00134                           \textcolor{keywordtype}{char} **ptype\_p);
  48 00135
  49 00136
  50 00153 \hyperlink{structSOLUTION}{SOLUTION}  *\hyperlink{group__subopt__zuker_ga0d5104e3ecf119d8eabd40aa5fe47f90}{zukersubopt}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *\textcolor{keywordtype}{string});
  51 00154
  52 00161 \hyperlink{structSOLUTION}{SOLUTION}  *\hyperlink{group__subopt__zuker_ga6d98a9450d1affadf144ac79f543da8c}{zukersubopt\_par}( \textcolor{keyword}{const} \textcolor{keywordtype}{char} *\textcolor{keywordtype}{string},
  53 00162                             \hyperlink{structparamT}{paramT} *parameters);
  54 00163
  55 00172 \textcolor{keywordtype}{void} \hyperlink{cofold_8h_a4958b517c613e4d2afd5bce6c1060a79}{get\_monomere\_mfes}( \textcolor{keywordtype}{float} *e1,
  56 00173                         \textcolor{keywordtype}{float} *e2);
  57 00174
  58 00175
  59 00180 DEPRECATED(\textcolor{keywordtype}{void} \hyperlink{cofold_8h_afee0c32208aa2ac97338b6e3fbad7fa5}{initialize\_cofold}(\textcolor{keywordtype}{int} length));
  60 00181
  61 00182 \textcolor{preprocessor}{#endif}
  62 \end{DoxyCode}